BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G14320.1

Length=839
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg951516 jgi|Araly1|951516|scaffold_803403.1                        231    5e-60
  Ahg488271 jgi|Araly1|488271|fgenesh2_kg.6__1405__AT3G46610.1         169    4e-41


> Ahg951516 jgi|Araly1|951516|scaffold_803403.1
Length=216

 Score =  231 bits (125),  Expect = 5e-60
 Identities = 133/137 (97%), Gaps = 0/137 (0%)
 Strand=Plus/Plus

Query  220  GCAACACTCTTGCCCTCCCAGCTTCAAACACTCCCAATAAGCAGAGTCTAAGCATCAGAT  279
            ||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct  57   GCAACACTCTTGCTCTCCCAGCTTCAAACGCTCCCAATAAGCAGAGTTTAAGCATCAGAT  116

Query  280  GTGCTCGTGTTGGTGGAGTGGAGATTCCGGCTAATAAGAGAATTGAGTACTCTCTTCAGT  339
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  117  GTGCTCGTGTTGGTGGTGTGGAGATTCCGGCTAATAAGAGAATTGAGTACTCTCTTCAGT  176

Query  340  ACATTCATGGGATTGGT  356
            |||||||||||||||||
Sbjct  177  ACATTCATGGGATTGGT  193


> Ahg488271 jgi|Araly1|488271|fgenesh2_kg.6__1405__AT3G46610.1
Length=2177

 Score =  169 bits (91),  Expect = 4e-41
 Identities = 99/103 (96%), Gaps = 0/103 (0%)
 Strand=Plus/Plus

Query  594   AGGACTCTTAAAGGCAAGAAAATTGCTATTGCAGGGAAGAAGAAAGTTTCCAAGTAATCA  653
             |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  2075  AGGACTCTTAAAGGCAAGAAAATTGCCATTGCAGGGAAGAAGAAAGTTTCCAAGTAATCA  2134

Query  654   TCTTCATGATCTCCTTCTTCTTCTGTAATACTCTTTTTAGTTT  696
             ||||| |||| |||||||| |||||||||||||||||||||||
Sbjct  2135  TCTTCTTGATTTCCTTCTTGTTCTGTAATACTCTTTTTAGTTT  2177


 Score = 65.8 bits (35),  Expect = 5e-10
 Identities = 37/38 (97%), Gaps = 0/38 (0%)
 Strand=Plus/Plus

Query  519   GAGATCCAGTGTTACCGTGGGGTAAGGCACATCCAAGG  556
             |||||||| |||||||||||||||||||||||||||||
Sbjct  2040  GAGATCCAATGTTACCGTGGGGTAAGGCACATCCAAGG  2077



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31032054438


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5