BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G14320.1 Length=839 Score E Sequences producing significant alignments: (Bits) Value Ahg951516 jgi|Araly1|951516|scaffold_803403.1 231 5e-60 Ahg488271 jgi|Araly1|488271|fgenesh2_kg.6__1405__AT3G46610.1 169 4e-41 > Ahg951516 jgi|Araly1|951516|scaffold_803403.1 Length=216 Score = 231 bits (125), Expect = 5e-60 Identities = 133/137 (97%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 220 GCAACACTCTTGCCCTCCCAGCTTCAAACACTCCCAATAAGCAGAGTCTAAGCATCAGAT 279 ||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 57 GCAACACTCTTGCTCTCCCAGCTTCAAACGCTCCCAATAAGCAGAGTTTAAGCATCAGAT 116 Query 280 GTGCTCGTGTTGGTGGAGTGGAGATTCCGGCTAATAAGAGAATTGAGTACTCTCTTCAGT 339 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 117 GTGCTCGTGTTGGTGGTGTGGAGATTCCGGCTAATAAGAGAATTGAGTACTCTCTTCAGT 176 Query 340 ACATTCATGGGATTGGT 356 ||||||||||||||||| Sbjct 177 ACATTCATGGGATTGGT 193 > Ahg488271 jgi|Araly1|488271|fgenesh2_kg.6__1405__AT3G46610.1 Length=2177 Score = 169 bits (91), Expect = 4e-41 Identities = 99/103 (96%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 594 AGGACTCTTAAAGGCAAGAAAATTGCTATTGCAGGGAAGAAGAAAGTTTCCAAGTAATCA 653 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2075 AGGACTCTTAAAGGCAAGAAAATTGCCATTGCAGGGAAGAAGAAAGTTTCCAAGTAATCA 2134 Query 654 TCTTCATGATCTCCTTCTTCTTCTGTAATACTCTTTTTAGTTT 696 ||||| |||| |||||||| ||||||||||||||||||||||| Sbjct 2135 TCTTCTTGATTTCCTTCTTGTTCTGTAATACTCTTTTTAGTTT 2177 Score = 65.8 bits (35), Expect = 5e-10 Identities = 37/38 (97%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 519 GAGATCCAGTGTTACCGTGGGGTAAGGCACATCCAAGG 556 |||||||| ||||||||||||||||||||||||||||| Sbjct 2040 GAGATCCAATGTTACCGTGGGGTAAGGCACATCCAAGG 2077 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31032054438 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5