BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G14410.1

Length=564
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488280 jgi|Araly1|488280|fgenesh2_kg.6__1414__AT5G14410.1         769    0.0  


> Ahg488280 jgi|Araly1|488280|fgenesh2_kg.6__1414__AT5G14410.1
Length=452

 Score =  769 bits (416),  Expect = 0.0
 Identities = 440/452 (97%), Gaps = 0/452 (0%)
 Strand=Plus/Plus

Query  32   TCTAATCCATTTTCCATGGATTCCTCTCCCAAAATCACTAATCTCCCTTACAAGAGGCTT  91
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  1    TCTAATCCATTTTCCATGGCTTCCTCTCCCAAAATCACTAATCTCCCTTACAAGAGGCTT  60

Query  92   TCTCTAGAAGATGATGTCTTCGGCGAAACAACAAGAAGAAGATCGTCATTCTATTCTTAC  151
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TCTCTAGAAGATGATGTCTTCGGCGAAACAACAAGAAGAAGATCGTCATTCTATTCTTAC  120

Query  152  AGGTTCAAGCGAGTGGTGTCATTGGGAGGAAGGAGGAGGATTAGGGTTAGAGTTAAGATC  211
            ||||||| | ||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct  121  AGGTTCAGGAGAGTGGTGTCACTGGGAGGAAGAAGGAGGATTAGGGTTAGAGTTAAGATC  180

Query  212  CGAAGACTTAGAGGATTTGTGAGGAAGAAAGCGAATAGGGTAAAAACTGGAATTTTAAAA  271
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct  181  CGAAGACTTAGAGGATTTGTGAGGAAGAAAGCGAATAGGGTCAAAACTGGAATTATAAAA  240

Query  272  ATATTGAAGAGGTTGAAGGAGAGTCAATCACACTTTGGTGATCTCTTTGCCGGTAATTAC  331
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  241  ATATTGAAGAGGTTGAAGGAGAGTCAATCACACTTTGGTGATCTCTTTGCTGGTAATTAC  300

Query  332  CTTTTCATGCAAGTTAATCCTTCTTCTCTTAACGCTAAGTATGTCTTCGACAAATCTTTT  391
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  301  CTTTTCATGCAAGTTAATCCTTCTTCTCTTAACACTAAGTATGTCTTCGACAAATCTTTT  360

Query  392  CAAGGCCAAAATGGTAACTTCCCCTCTAGATTATCTCTTCCTAGAGTTCTTATGTAAAGA  451
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  CAAAGCCAAAATGGTAACTTCCCCTCTAGATTATCTCTTCCTAGAGTTCTTATGTAAAGA  420

Query  452  CGGATAAACATTAACTATAGTTATGTTTCTGT  483
            | |||||||| |||||||||||||||||||||
Sbjct  421  CTGATAAACAATAACTATAGTTATGTTTCTGT  452



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20604018060


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5