BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G14500.1 Length=1329 Score E Sequences producing significant alignments: (Bits) Value Ahg940930 jgi|Araly1|940930|scaffold_601474.1 1535 0.0 > Ahg940930 jgi|Araly1|940930|scaffold_601474.1 Length=963 Score = 1535 bits (831), Expect = 0.0 Identities = 911/949 (96%), Gaps = 7/949 (1%) Strand=Plus/Plus Query 115 TCGAGGTTAATTAGGCCCAAATCGATGCCTTTAAATGTAGTCAATGATCGTGATGGCTCT 174 |||||||||| | ||| |||||||||||||| ||||||| ||||||||||||||| ||| Sbjct 1 TCGAGGTTAA--A-GCCAAAATCGATGCCTTTGAATGTAGCCAATGATCGTGATGGTTCT 57 Query 175 TCTCGCATTCTTTTGACCGACCCTGCCGGATCAACTGCTGAGGTGCTTTTGTATGGAGGG 234 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 58 TCTCGCATTCTTTTGACCGACCCTGCCGGTTCAACTGCTGAGGTGCTTTTGTATGG-GGG 116 Query 235 -CAAGTGGTTTCTTGGAAAAACGAAAGGAGAGAGAAGTTGCTTTATATGAGCACCAAGGC 293 |||||||||||||||| ||| |||||||||||| |||||||||||||||||| |||||| Sbjct 117 ACAAGTGGTTTCTTGGAGAAATGAAAGGAGAGAGCAGTTGCTTTATATGAGCAGCAAGGC 176 Query 294 GCAATTGAAGCCACCAAAGGCGATCAGGGGAGGGTTACCTATCAGCTTTCCACAGTTTGG 353 ||||||||| ||||| ||||| || |||||||||||||||||| |||||||||||||||| Sbjct 177 GCAATTGAAACCACCCAAGGCCATTAGGGGAGGGTTACCTATCTGCTTTCCACAGTTTGG 236 Query 354 AAATTTTGGTGCACTTGAGCGACATGGATTTGCCCGTAACAGATTCTGGTCACTTGATAA 413 ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 237 AAATTTTGGTGCACTTGAGCGACATGGATTTGCTCGTAACAGATTCTGGTCATTTGATAA 296 Query 414 TGATCCTTCACCTCTGCCTCCGGCTAACCAGCAATCAACTGTTGATTTAGTATTGAAGTC 473 ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 297 TGATCCTGCACCTCTGCCGCCGGCTAACCAGCAATCAACTGTTGATTTAGTATTGAAGTC 356 Query 474 TACTGAAGATGATTTGAAGATATGGCCTCATAGCTTTGAACTTCGTGTTCGCATATCTAT 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 TACTGAAGATGATTTGAAGATATGGCCTCATAGCTTTGAACTTCGTGTTCGCATATCTAT 416 Query 534 CAGTCCTGGAAAACTTACAATAATCCCGCGTGTGAGGAACACTGACAC-AAAGGCATTTT 592 |||||||||||||||||| || |||||||||||||||||||||||| | ||||||||| | Sbjct 417 CAGTCCTGGAAAACTTACTATCATCCCGCGTGTGAGGAACACTGAC-CTAAAGGCATTCT 475 Query 593 CCTTTATGTTTTCACTTCGTAACTACTTATATGTATCCGATATAAGTGAAGTTCGGGTTG 652 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 476 CCTTTATGTTTTCACTTCGTAACTACTTATATGTATCCGACATAAGTGAAGTTCGGGTTG 535 Query 653 AGGGTCTGGAGACGCTTGATTATCTGGACAACTTGATGCGTAGAGAAAGATTCACGGAGC 712 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 536 AGGGTCTGGAGACACTTGATTATCTGGACAACTTGATGCGTAGAGAAAGATTCACAGAGC 595 Query 713 AGGCAGATGCAATTACCTTTGACGGCGAGGTTGATAAAGTGTACTTGAACACGCCGACAA 772 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 596 AGGCAGATGCAATTACCTTTGACGGCGAGGTTGATAGAGTGTACTTGAACACGCCGACAA 655 Query 773 AGATTGCCATCATAGATCATGAGAGGAAAAGAACTATCGAGTTGCGAAAGGAAGGCATGC 832 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 656 AGATTGCCATCATAGATCATGAGAGAAAAAGAACTATCGAGTTGCGAAAGGAAGGCATGC 715 Query 833 CAAATGCAGCTGTGTGGAACCCTTGGGACAAGAAGGCCAAGAGTATTGCAGATATGGGAG 892 ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 716 CAAATGCAGTTGTGTGGAACCCTTGGGATAAGAAGGCCAAGAGTATTGCAGATATGGGAG 775 Query 893 ATGAGGATTACACAACAATGCTGTGTGTAGATTCTGGTGCTATAGAAAGCCCAATTGTGT 952 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 776 ATGAGGATTACACAACAATGCTGTGTGTAGATTCTGGTGCTATAGAAACCCCAATTGTGT 835 Query 953 TGAAGCCACATGAAGAGTGGAAAGGAAGACAAGAACTCTCTATCGTCTCCTCAAGCTACT 1012 ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 836 TGAAGCCACATGAAGAGTGGAGAGGGAGACAAGAACTCTCTATCGTCTCCTCAAGCTACT 895 Query 1013 GCAGCGGTCAGCTCGATCCACGTAAGGTTCTTTATGGGGATTACTGATA 1061 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 896 GCAGCGGTCAGCTCGATCCACGTAAGGTTCTTTATGGGGATTACTGATA 944 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49712283768 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5