BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G14530.1 Length=1199 Score E Sequences producing significant alignments: (Bits) Value Ahg488294 jgi|Araly1|488294|fgenesh2_kg.6__1428__AT5G14530.1 1670 0.0 > Ahg488294 jgi|Araly1|488294|fgenesh2_kg.6__1428__AT5G14530.1 Length=1104 Score = 1670 bits (904), Expect = 0.0 Identities = 1014/1066 (95%), Gaps = 11/1066 (1%) Strand=Plus/Plus Query 11 TTTTCTCGTGCTTCACTGATAATCCAGCTTGACGATGTCGTTGACGGAGCTAGACGACGG 70 ||||||| |||||||||| ||||| |||||||||||||| |||||||||||||||||||| Sbjct 1 TTTTCTCTTGCTTCACTGTTAATCGAGCTTGACGATGTCTTTGACGGAGCTAGACGACGG 60 Query 71 ACTGGTTCGCAGGATGGCCATGGGCGCAGTCTTCTCTGATTTTGGAGGGAAGATACATTC 130 |||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 61 ACTGGTGCGCAGGATGGCCATCGGCGCAGTCTTCTCTGATTTCGGAGGGAAGATACATTC 120 Query 131 GGTGGGTTTCCATAGGACTGATGATCTATTGGTCACATCCAGCGAAGATGATTCACTTCG 190 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 121 GGTGGGTTTCCATAGGACTGATGATCTATTGGTTACATCCAGCGAAGATGATTCACTTCG 180 Query 191 CCTCTTCGATATCGCCAACGCTAAACAGCTGAAGATTACATACCATAAGAAACATGGCAC 250 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 181 TCTCTTCGATATCGCCAACGCTAAACAGCTCAAGATTACATACCATAAGAAACATGGAAC 240 Query 251 CGATCGTGTATGCTTTACCCATCATCCTAGCTCTCTAATTTGCTCTTCTCGATACAATTT 310 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 241 CGATCGTGTATGCTTTACCCATCATCCCAGCTCTCTAATTTGCTCTTCTCGATACAATTT 300 Query 311 GGAGTCCACTGGTGAATCCTTGAGATATCTCTCAATGTATGATAATCGGATCCTACGCTA 370 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 301 GGAGTCCACTGGTGAATCCTTGAGATATCTCTCAATGTATGATAACCGGATCCTTCGCTA 360 Query 371 CTTTAAAGGGCATAAAGACAGGGTTGTATCACTTTGTATGTCTCCTATAAATGATAGCTT 430 |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 361 CTTTAAAGGGCATAAAGACAGGGTTGTATCGCTTTGTATGTCTCCTATTAATGATAGCTT 420 Query 431 CATGTCTGGTTCTCTCGACCGAAGTGTTAGACTCTGGGATCTTCGTGTAAATGCCTGCCA 490 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 421 CATGTCTGGTTCTCTCGACCGAAGTGTCAGACTCTGGGATCTTCGTGTAAATGCCTGCCA 480 Query 491 GGGAATTCTACATCTACGTGGTAGACCTGCAGTTGCGTATGACCAACAAGGCCTTGTGTT 550 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| Sbjct 481 GGGAATTCTACATCTACGAGGTAGGCCTGCAGTTGCGTATGACCAACAAGGCCTCGTGTT 540 Query 551 TGCAATTGCAATGGAAGGAGGTGCTGTTAAATTATTTGATTCCAGGTGTTATGACAAGGG 610 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 541 TGCAATTGCAATGGAAGGAGGTGCTGTTAAATTATTTGATTCCCGGTGTTATGACAAGGG 600 Query 611 TCCCTTTGACACATTTCTGGTGGGTGGGGATACTGCTGAGGTTAACGATATAAAATTCAG 670 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 601 TCCCTTTGACACATTTCTGGTGGGTGGGGATACTGCTGAGGTTAACGATATCAAATTCAG 660 Query 671 CAACGATGGGAAATCCATGCTCCTAACGACTACAAATAACAATATCTACGTTCTTGATGC 730 |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 661 TAACGATGGAAAATCCATGCTCCTAACGACTACAAATAATAATATCTACGTTCTTGATGC 720 Query 731 ATATCGTGGAGAGAAGAAATGTGGTTTTAGTTTGGAGCCTTCACAGGGTACACCCATAGA 790 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 721 ATATCGTGGAGAGAAGAAATGTGGTTTTAGTTTGGAGCCATCACAGGGCACACCCATAGA 780 Query 791 GGCCACCTTCACACCAGATGGCAAGTATGTTCTGTCAGGTTCAGGTGATGGAACCTTACA 850 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 781 AGCCACCTTCACACCAGATGGCAAGTATGTTCTGTCAGGATCAGGTGATGGAACCTTACA 840 Query 851 TGCGTGGAACATCGAGAACCCATCTGAGGTGGCGAGGTGGGAGAACAACATAGGAGTAGT 910 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 TGCGTGGAACATCGAGAACCCATCTGAGGTGGCGAGGTGGGAGAACAACATAGGAGTAGT 900 Query 911 GTCGTGTCTGAAATGGGCACCACGTAGAGCCATGTTCGTTGCTGCTTCTACGGTTCTCAC 970 ||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 901 GTCATGTCTGAAATGGGCACCTCGTAGAGCCATGTTCGTTGCAGCTTCTACGGTTCTCAC 960 Query 971 ATTCTGGATCCCAAACGACGGTGAATCACCAGCCCCCGCCGATCCTCCTACCGATCAACA 1030 |||||||||||| ||||||||||| ||||||||||||| |||||| || |||| ||||| Sbjct 961 ATTCTGGATCCCCAACGACGGTGAGGCACCAGCCCCCGCGGATCCTGCTGCCGACCAACA 1020 Query 1031 A-C--------AGTGACGACATATAT--GTTTCCATTATGCACTTG 1065 | | |||||| |||||||| ||||||||||| |||||| Sbjct 1021 AGCTCTTTCTCAGTGACAACATATATATGTTTCCATTATTCACTTG 1066 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44756304558 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5