BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14550.1
Length=1772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940935 jgi|Araly1|940935|scaffold_601479.1 1738 0.0
> Ahg940935 jgi|Araly1|940935|scaffold_601479.1
Length=1150
Score = 1738 bits (941), Expect = 0.0
Identities = 1097/1169 (94%), Gaps = 24/1169 (2%)
Strand=Plus/Plus
Query 304 ATTTTCTGTGTGGATCCAAAATGAAGAAGAAGGTGTCTCAGCAGAAGTTACTGTACAGAT 363
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATTTACTGTGTGGATCCAAAATGAAGAAGAAGGTGTCGCAGCAGAAGTTACTGTACAGAT 60
Query 364 GGAAGAGGAAGGTATACGCCACGTTGATGTTCGCTTTCTGCTTTGGGACTTTCGTATTTA 423
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 61 GGAAGAGGAAGGTATACGCCACGTTGATGCTCGCTTTCTGCTTGGGGACTTTCG------ 114
Query 424 TACAAGCTCGTTTCGCATCTATACAAGCTCGTTTCAATCGAATCTCTGCGTCTCTCGATT 483
| | ||| ||| ||||||||||||||| ||||| |||||||||||||||
Sbjct 115 T---A-----TTT---ATC----CAAGCTCGTTTCAATGGAATCACTGCGTCTCTCGATT 159
Query 484 CGCTTAAAAAGCCTCGTCTAGATCAGAGACCACAGATTGCCTTCCTCTTCATTGCCCGGA 543
|||| || ||||||||||| ||||||| |||||||||||||||||| |||||||| ||||
Sbjct 160 CGCTGAAGAAGCCTCGTCTCGATCAGAAACCACAGATTGCCTTCCTATTCATTGCGCGGA 219
Query 544 ATCGACTCCCTCTCGAGTTTGTCTGGGATGCTTTCTTTAAGGGTGAGGATGGAAAGTTCT 603
||||||||||||||||| ||||||||||||| |||||| ||||||||||||| |||||||
Sbjct 220 ATCGACTCCCTCTCGAGCTTGTCTGGGATGCATTCTTTCAGGGTGAGGATGGCAAGTTCT 279
Query 604 CAATATATGTTCATTCTAGACCTGGATTTGTTCTCAACGAGGCTACAACGCGATCCAAGT 663
||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 280 CAATATATGTTCACTCTAGACCTGGATTCGTTCTCAGCGAGGCTACAACGCGATCCAAGT 339
Query 664 ACTTTTTGGATCGGCAACTTAATGACAGTATACAGGTAGATTGGGGTGAATCAACCATGA 723
||| |||||||| ||| ||||||||||||||||||| |||||||||||||| |||||||
Sbjct 340 TCTTCTTGGATCGCCAAGTTAATGACAGTATACAGGTTGATTGGGGTGAATCGACCATGA 399
Query 724 TTGAAGCAGAACGTGTATTGCTTAGACATGCACTTAGAGATTCATTTAATCACCGCTTTG 783
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 400 TTGAAGCAGAACGTGTATTGCTCAGACATGCACTTAGAGATCCATTTAATCACCGCTTTG 459
Query 784 TTTTTCTTTCTGATAGCTGCATACCTCTGTACAGTTTCAGCTACACGTATAACTACATCA 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 TTTTTCTTTCTGATAGCTGCATACCTCTGTACAGTTTCAGCTACACGTATAACTACATCA 519
Query 844 TGTCAACACCAACTAGTTTCGTTGATAGCTTTGCAGATACAAAAGATAGCCGTTATAATC 903
||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 520 TGTCAGCACCTACTAGTTTCGTTGATAGCTTTGCAGATACAAAAGATAGTCGTTATAATC 579
Query 904 CTAGAATGAATCCCATTATTCCTGTTCGTAACTGGAGAAAAGGATCACAGTGGGTCGTTC 963
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 580 CTAGAATGAATCCCATTATTCCTGTTCATAACTGGAGAAAGGGATCACAGTGGGTCGTTC 639
Query 964 TGAATAGAAAACACGCAGAAATTGTGGTGAATGATACCTCTGTCTTTCCTATGTTTCAGC 1023
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 640 TGAATAGAAAACATGCAGAAATTGTGGTGAATGATACCTCCGTCTTTCCTATGTTTCAGC 699
Query 1024 AGCATTGCAGGAGAAAATCACTTCCAGAGTTTTGGCGAGATCGTCCTGTACCAGCTGAAG 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 700 AGCATTGCAGGAGAAAATCACTTCCAGAGTTTTGGCGAGATCGTCCTGTACCATCTGAAG 759
Query 1084 GTTGGAAGGAACACAACTGTATACCTGATGAGCACTATGTTCAGACATTGCTATCTCAAA 1143
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 760 GTTGGAAGGAACACAACTGTATACCTGATGAGCACTACGTTCAGACATTGCTATCTCAAA 819
Query 1144 AGGGTGTAGATAGCGAACTCACACGAAGATCACTGACACACTCAGCTTGGGACCTTTCAT 1203
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 820 AGGGTGTGGATAGCGAACTCACACGACGATCACTGACACACTCAGCTTGGGACCTTTCTT 879
Query 1204 CCTCGAAAAGTAATGAACGTCGTGGATGGCATCCTATGACTTACAAGTTTTCTGATGCTA 1263
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 CCTCTAAAAGTAATGAACGTCGTGGATGGCATCCTATGACTTACAAGTTTTCTGATGCTA 939
Query 1264 CTCCTGATCTTATACAGTCCATTAAGGGAATCGACAATATCAACTACGAGACTGAATACC 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 CTCCTGATCTTATACAGTCCATTAAGGGAATCGACAATATCAACTACGAGACTGAATACC 999
Query 1324 GGCGAGAATGGTGTAGC-AGTAAAGGGAAACCATCACCGTGCTTCCTCTTCGCCAGGAAG 1382
||||||||||||||||| | |||||||||||| || |||||||| |||||||||||||||
Sbjct 1000 GGCGAGAATGGTGTAGCCA-TAAAGGGAAACCGTCGCCGTGCTTTCTCTTCGCCAGGAAG 1058
Query 1383 TTCACTCGTCCCGCCGCTCTCCGCCTACTCCGTGAAACTATCTTGTTAGAGGGCAAAGAG 1442
|||||||||||||| ||||||||||| ||||||||| ||||||||||||||| |||||||
Sbjct 1059 TTCACTCGTCCCGCGGCTCTCCGCCTCCTCCGTGAATCTATCTTGTTAGAGGACAAAGAG 1118
Query 1443 CATGACAAT-AAGTAGATCCTTCACCATT 1470
|| |||||| |||||||||||||||||||
Sbjct 1119 CAAGACAATTAAGTAGATCCTTCACCATT 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66505567770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5