BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G14570.1 Length=1917 Score E Sequences producing significant alignments: (Bits) Value Ahg350602 jgi|Araly1|350602|fgenesh1_pg.C_scaffold_6001195 2152 0.0 > Ahg350602 jgi|Araly1|350602|fgenesh1_pg.C_scaffold_6001195 Length=1473 Score = 2152 bits (1165), Expect = 0.0 Identities = 1381/1485 (93%), Gaps = 15/1485 (1%) Strand=Plus/Plus Query 189 ATGGAGCCATCTCAACGCAACACCAAACCGCCGTCGTTTTCAGATTCCACTATCCCGGTT 248 ||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||||| || Sbjct 1 ATGGAGCCATCTCAAGGCAACACTAAAACGCCGTCGTTTCCAGATTCCACTATCCCTGTG 60 Query 249 GATTCCGATGGTCGAGCCACCGTCTTCCGACCATTCTCTCTCTCCTCGCCACACTCACGA 308 ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 61 GATTCCGATGGCCGAGCCACCGTCTTCCGACCATTTTCTCTCTCCTCGCCGCACTCACGA 120 Query 309 GCCTTTCACCTAGCTTGGCTCTCACTCTTCTCATGCTTCTTCTCCACCTTCTCCATCCCT 368 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 121 GCCTTTCACCTAGCGTGGCTCTCACTCTTCTCATGCTTCTTCTCTACCTTCTCCATCCCT 180 Query 369 CCTCTGGTCCCCGTCATCTCCTCCGACCTCAACCTCTCTGCCTCCACCGTATCCGCCGCC 428 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CCACTCGTCCCCGTCATCTCCTCCGACCTCAACCTCTCTGCCTCCACCGTATCCGCCGCC 240 Query 429 GGAATCGCTTCCTTCGCTGGCTCCATCTTCTCTCGCCTCGCTATGGGACCACTCTGTGAT 488 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 241 GGAATCGCCTCCTTCGCTGGCTCTATCTTCTCTCGCCTCGCTATGGGACCACTCTGTGAT 300 Query 489 CTCATCGGACCACGTACTTCCTCAGCGATTCTCTCTTTTCTCACCGCTCCTGTAATCCTC 548 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 301 CTCATCGGACCACGGACTTCCTCAGCGATTCTCTCTTTCCTCACCGCTCCTGTAATCCTC 360 Query 549 TCCGCCTCACTCGTCTCCTCTCCGACGTCCTTCATCCTCGTCCGTTTCTTCGTCGGCTTC 608 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 361 TCCGCCTCACTCGTCTCCTCCCCGACGTCCTTCATACTCGTCCGTTTCTTCGTCGGCTTC 420 Query 609 TCGCTCGCTAATTTCGTAGCCAATCAATACTGGATGTCCTCCATGTTCTCCGGTAACGTC 668 || ||||||||||||||||| ||||||||||||||||||||||||||||| || |||||| Sbjct 421 TCTCTCGCTAATTTCGTAGCTAATCAATACTGGATGTCCTCCATGTTCTCTGGCAACGTC 480 Query 669 ATTGGTCTCGCTAACGGTGTCTCAGCCGGTTGGGCTAACGTCGGCGCCGGTATCTCTCAG 728 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 ATTGGTCTCGCTAACGGTGTCTCAGCCGGTTGGGCTAACGTCGGCGCCGGTATCTCTCAG 540 Query 729 CTCCTTATGCCTCTCATATACTCCACCATAGCCGAATTCCTTCC-ACGCGCCGTCGCCTG 787 || |||||||||||||||||| | ||||| ||||||||| | || |||| || ||||||| Sbjct 541 CTACTTATGCCTCTCATATACGCAACCATCGCCGAATTC-TCCCCACGCTCCATCGCCTG 599 Query 788 GCGCGTGTCCTTCGTATTTCCCGCCATTTTTCAGGTTACAACGGCCGTCCTCGTTCTCCT 847 ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 600 GCGCGTGTCATTCGTCTTTCCCGCCATTTTTCAGGTTACAACCGCCGTCCTCGTTCTCCT 659 Query 848 CTACGGCCAAGATACTCCCCACGGTAACAGAAAAAACTCGAACCAGAACAAACTCACAAT 907 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| || Sbjct 660 CTACGGCCAAGATACTCCCAACGGTAACAGAAAAAACTCGAACCAGAACAAAATCATAAA 719 Query 908 TCCTGAAGAAGAAGAAGTACTAGTAGTTGAAGAAGACGAACGTTCCAGTTTCGTCGAGAT 967 |||||||||||||| | || ||||| | |||||| |||||||||||||| |||||||| Sbjct 720 TCCTGAAGAAGAAGTATTAGTAGTACAAGGAGAAGAAGAACGTTCCAGTTTTGTCGAGAT 779 Query 968 CCTAATCGGCGGACTTGGAAATTACAGAGCGTGGATCTTAGCGCTGCTCTACGGATACTC 1027 ||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||| Sbjct 780 CCTTATCGGCGGACTTGGAAATTACAGAGCGTGGATCCTGGCGCTTCTCTACGGATACTC 839 Query 1028 GTACGGCGTCGAGCTAACGACGGACAACGTGATCGCCGGATATTTCTACGAGAGATTTGG 1087 ||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| || Sbjct 840 GTACGGCGTTGAGCTCACGACGGACAACGTTATCGCCGGATATTTCTACGAGAGATTCGG 899 Query 1088 AGTGAATCTGGAGGCGGCGGGGACGATCGCGGCGAGTTTCGGGATATCGAACATTGCGTC 1147 |||||| | ||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 900 CGTGAATTTAGAGGCAGCGGGGACGATCGCGGCGAGTTTCGGGATATCGAACATAGCGTC 959 Query 1148 GCGACCGGCGGGAGGGATGATATCGGATGCGCTGGGGAAGAGATTCGGTATGAGAGGGAG 1207 ||||||||||||||||||||||||||| |||||||| || |||||||| ||||||||||| Sbjct 960 GCGACCGGCGGGAGGGATGATATCGGACGCGCTGGGAAAAAGATTCGGGATGAGAGGGAG 1019 Query 1208 GCTGTGGGGGCTATGGATCGTGCAATCGGTGGCTGGGTTGTTGTGCGTGTTACTCGGACG 1267 ||| ||||| || ||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 GCTCTGGGGACTGTGGGTGGTGCAATCGGTGGCTGGGTTGTTGTGCGTGTTACTCGGACG 1079 Query 1268 AGTCAACTCGCTCTGGGGATCAATC-CTCGTCATGTGGGTCTTCTCTGTTTTCGTTCAAG 1326 ||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||| Sbjct 1080 AGTCAACTCGCTCTGGGGATCAATCGC-CGTCATGTGGGTCTTCTCTGTTTTTGTTCAAG 1138 Query 1327 CTGCTTCTGGCCTTGTATTTGGCGTGGTCCCTTTCGTCTCCACGCGATCGTTAGGAGTGG 1386 ||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||| | Sbjct 1139 CTGCTTCTGGCCTCGTATTTGGCGTGGTCCCTTTCGTCTCCACGAGATCTTTAGGAGTCG 1198 Query 1387 TGGCGGGAATTACGGGAAGCGGCGGTACGGTTGGTGCGGTGGTGACGCAGTTTCTGTTGT 1446 ||||||||||||||||||||||||| || || ||||||||||| |||||||||||||||| Sbjct 1199 TGGCGGGAATTACGGGAAGCGGCGGCACTGTAGGTGCGGTGGTCACGCAGTTTCTGTTGT 1258 Query 1447 TTTCCGGTGATGATGTTCGAAAACAGAGAAGCATTTCACTTATGGGTTTGATGACTTTTG 1506 ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 TTTCCGGCGATGGTGTTCGAAAACAGAGAAGCATTTCACTTATGGGTTTGATGACTTTTG 1318 Query 1507 TGTTTGCTCTTTCTGTTACATCAATTTACTTTCCACAATGGGGTGGAATGTGTTGTGGGC 1566 ||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1319 TGTTTTCTCTGTCTGTTACATCTATTTACTTTCCACAATGGGGTGGAATGTGTTGTGGGC 1378 Query 1567 CTTCGTCATCTTCCGAAGAAGAAGATATT-TCTCGGGGACTCCTTGTAGAAGACGAAGAT 1625 |||| | |||||||||||| || |||||| |||||||||||||||||||||| Sbjct 1379 CTTC--C-------GAAGAAGAAGAT-TTATCTCGGCGACTCCTTGTAGAAGACGAAGAG 1428 Query 1626 GAAGAAGGTAAAGTGGTTAGTGGTAGTCTACGTCCCGTTTGTTGA 1670 ||||| | ||||||| ||||||||| |||||||||||||||||| Sbjct 1429 GAAGACGATAAAGTGACTAGTGGTAGACTACGTCCCGTTTGTTGA 1473 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72028653295 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5