BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G14590.1 Length=1804 Score E Sequences producing significant alignments: (Bits) Value Ahg488300 jgi|Araly1|488300|fgenesh2_kg.6__1434__AT5G14590.1 2497 0.0 > Ahg488300 jgi|Araly1|488300|fgenesh2_kg.6__1434__AT5G14590.1 Length=1746 Score = 2497 bits (1352), Expect = 0.0 Identities = 1546/1633 (95%), Gaps = 39/1633 (2%) Strand=Plus/Plus Query 13 CTCAGAGCACACTTTAGCAATAAACTTGCCGACCGAAAGCTGCAGATTCACTGATTCAGT 72 |||||||||| ||||||||||||||||| | || ||||| | |||| |||||||| Sbjct 1 CTCAGAGCACGCTTTAGCAATAAACTTG--G--CG-AAGCT--A-TTTCA--GATTCAGT 50 Query 73 GATCGAAGTTGAGAGTTTGGGTT-GAGGTCGGAGTCTCGGATGCTGAATAAGCTCACGCA 131 | |||||||||| || | || ||||||||||| |||||||||||||||||||||||| Sbjct 51 GGTCGAAGTTGA-AGGAAAGATTAGAGGTCGGAGTATCGGATGCTGAATAAGCTCACGCA 109 Query 132 CGGCGTTTTCACGTACCGTGCCAGCCTCACCGCCATGTTATCTTCTTCAACCTCTGCTGG 191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 110 CGGCGTTTTCACGTACCGTGCCAGCCTCACCGCCATGTTATCTTCTTCAACCTCTGCTGG 169 Query 192 TTTATCGTCTTCGTTCG-TT-T-C------TTC---G-A--------GATTTCTTAGTTC 230 ||||||||||||||||| || | | ||| | | ||||||| ||||| Sbjct 170 TTTATCGTCTTCGTTCGCTTCTACTAGGAATTCATGGAAGTCTCCGGGATTTCTCAGTTC 229 Query 231 CGGTATATTCTCTAGTGGCGCTTCGAGGAATCGCGTGACTTTTCCCGTTCAGTTTCATCG 290 ||||||||||| | ||||||||||||||||||| || |||||| |||||||| |||||| Sbjct 230 CGGTATATTCTTTGGTGGCGCTTCGAGGAATCGTGTTTCTTTTCACGTTCAGTCTCATCG 289 Query 291 CGCATCAGCTGTTCGATGTTTTGCTTCTTCAGGCGGTTCTGATAGAATTCAGGTTCAGAA 350 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 290 CGCATCAGCTGTTCGATGTTTTGCCTCTTCAGGCGGTTCTGATAGAATTCAGGTTCAGAA 349 Query 351 TCCTATCGTTGAAATGGATGGCGATGAAATGACGAGGGTGATATGGAGTATGATAAAGGA 410 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 350 TCCTATCGTTGAAATGGACGGCGATGAAATGACGAGGGTGATATGGAGTATGATAAAGGA 409 Query 411 GAAACTTATTCTTCCTTATCTGGATTTGGACATTAAGTACTTCGACTTGGGGATTCTGAA 470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 410 GAAACTTATTCTTCCTTATCTGGATTTGGACATTAAGTACTTCGACTTGGGGATTCTGAA 469 Query 471 TCGCGATGCTACTGATGACAAGGTTACAGTTGAAAGTGCAGAAGCAGCTCTTAAGTACAA 530 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 470 TCGTGATGCTACTGATGACAAGGTTACAGTTGAAAGTGCAGAAGCAGCTCTTAAGTACAA 529 Query 531 TGTTGCTATCAAATGTGCCACTATAACTCCTGATGAGGGTAGAGTGAAGGAGTTTGGACT 590 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 530 TGTTGCTATCAAATGTGCCACTATAACTCCTGATGAGGGTAGAGTGAAGGAGTTTGGACT 589 Query 591 GAAATCAATGTGGAGGAGTCCTAATGGGACGATCAGAAACATTCTAGATGGAACCGTATT 650 |||||||||||||||||||||||||||||| |||||||||||| ||||||| || ||||| Sbjct 590 GAAATCAATGTGGAGGAGTCCTAATGGGACAATCAGAAACATTTTAGATGGTACTGTATT 649 Query 651 CCGTGAACCTATTATGTGCAGCAATATCCCCCGGCTTGTTCCTGGTTGGGAAAAGCCTAT 710 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 650 CCGTGAACCTATTATGTGCAGCAATATCCCCCGGCTTGTTCCTGGTTGGAAAAAGCCTAT 709 Query 711 ATGCATTGGTAGACATGCCTTTGGTGACCAGTATCGTGCCACTGATACAGTAATTAAAGG 770 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 710 ATGCATTGGTAGGCATGCCTTTGGTGACCAGTATCGTGCCACTGATACAGTAATTAAAGG 769 Query 771 GCCAGGAAAGTTGAAAATGGTTTTTGTCCCAGAAGATGGAAACGCACCTGTGGAGCTAGA 830 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 770 GCCAGGAAAGTTGAAAATGGTTTTTGTCCCAAAAGATGGAAACGCACCTGTGGAGCTAGA 829 Query 831 TGTATATGATTTCAAGGGCCCAGGTGTCGCACTTGCTATGTACAACGTAGATGAGTCAAT 890 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 830 TGTATATGATTTCAAAGGCCCAGGTGTCGCACTTGCTATGTACAACGTAGATGAGTCAAT 889 Query 891 TAGAGCTTTTGCTGAGTCATCTATGGCGATGGCATTAACTAAGAAATGGCCATTATACTT 950 | |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 890 TCGAGCTTTTGCTGAGTCATCTATGGCGATTGCATTAACTAAGAAATGGCCACTATACTT 949 Query 951 GAGCACCAAGAACACAATTCTCAAGAAATATGATGGCAGATTTAAGGACATATTTCAAGA 1010 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 950 GAGCACCAAGAACACAATTCTCAAGAAATATGATGGCAGATTCAAGGACATATTTCAAGA 1009 Query 1011 AGTTTATGAGGCGAATTGGAAGCAAAAGTTTGAAGAGCACTCAATCTGGTACGAGCACCG 1070 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1010 AGTTTATGAGGCGAATTGGAAGCAAAAGTTTGAAGAGCACTCAATCTGGTATGAGCACCG 1069 Query 1071 GTTGATTGATGACATGGTGGCTTACGCAGTCAAAAGTGAAGGTGGCTATGTCTGGGCTTG 1130 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 1070 CTTGATCGATGACATGGTGGCTTACGCAGTCAAAAGTGAAGGGGGCTATGTCTGGGCATG 1129 Query 1131 CAAAAACTACGACGGTGATGTTCAAAGCGATCTTCTTGCCCAAGGGTTTGGCTCATTAGG 1190 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1130 CAAAAACTACGATGGTGATGTTCAAAGCGATCTTCTTGCCCAAGGGTTTGGCTCATTAGG 1189 Query 1191 CCTCATGACCTCCGTTTTGCTGTCCGCTGATGGGAAAACACTCGAGTCGGAAGCGGCTCA 1250 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1190 CCTCATGACCTCTGTTTTGCTGTCCGCTGATGGGAAAACACTCGAGTCGGAAGCGGCTCA 1249 Query 1251 TGGAACAGTAACTCGGCATTTCCGACTGCACCAAAAGGGACAAGAAACCAGTACTAACAG 1310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1250 TGGAACAGTAACTCGGCATTTCCGACTGCACCAAAAGGGACAAGAAACCAGTACTAACAG 1309 Query 1311 CATAGCCTCAATATTTGCATGGACACGCGGCTTAGAACACAGGGCGAAACTGGATAAGAA 1370 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1310 CATTGCCTCCATATTTGCATGGACACGCGGCTTAGAACACAGGGCGAAACTGGATAAGAA 1369 Query 1371 CGAGAAATTAATGGATTTCGTGAAGAAGCTCGAGTCGTCATGTGTAAACACTGTTGAGAC 1430 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1370 CGAAAAATTAATGGATTTCGTGAAGAAGCTAGAGTCGTCATGTGTAAACACTGTTGAGAC 1429 Query 1431 AGGGAAAATGACCAAGGATCTTGCCCTTTTAATCCATGGTCCCAAGGTGAGTAGGGATTT 1490 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1430 AGGGAAAATGACCAAGGATCTTGCCCTTTTAATCCATGGCCCCAAGGTGAGTAGGGATTT 1489 Query 1491 GTTTTTGAACACGGAAGAGTTCATTGATGCAGTAGCCTCCAAGCTCAAAACACAGTTCAA 1550 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 1490 GTTTTTGAACACGGAAGAGTTCATTGATGCAGTAGCCTCGAAGCTCAAAACACAGCTCAA 1549 Query 1551 AGAGCTTCCTCTTGTCTGA--C---C-ATTCCTGGGAATTGGGAACAATACAAAAATAAT 1604 ||||||||||||||||||| | | ||||||||||| ||||||||||||||||||||| Sbjct 1550 AGAGCTTCCTCTTGTCTGAGTCTGACCATTCCTGGGAAGTGGGAACAATACAAAAATAAT 1609 Query 1605 GCTCGCAATAATT 1617 |||||||| |||| Sbjct 1610 GCTCGCAACAATT 1622 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67724455610 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5