BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14640.1
Length=1719
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488305 jgi|Araly1|488305|fgenesh2_kg.6__1439__AT5G14640.1 2204 0.0
Ahg475455 jgi|Araly1|475455|fgenesh2_kg.2__585__AT1G57870.1 422 5e-117
> Ahg488305 jgi|Araly1|488305|fgenesh2_kg.6__1439__AT5G14640.1
Length=1626
Score = 2204 bits (1193), Expect = 0.0
Identities = 1374/1458 (94%), Gaps = 25/1458 (2%)
Strand=Plus/Plus
Query 65 CATCACGAAG-AAGAGAGAGATTTGCCATTTTCGGCAAGG-A-AGTGTTTTATTCTAGGG 121
||||| |||| || |||||||||||||||||||||||||| | ||| |||||||||||||
Sbjct 13 CATCA-GAAGAAAAAGAGAGATTTGCCATTTTCGGCAAGGAAGAGTCTTTTATTCTAGGG 71
Query 122 CTTCTCTAG-T--TGCTGCGTAGACAAGATGGTGGAGTGAAATTGCGGCGGTGACTTTT- 177
|||||||| | ||||||||| ||||||||||| | |||||||||||||| |||||||
Sbjct 72 TTTCTCTAGTTGCTGCTGCGTAAACAAGATGGTGAACTGAAATTGCGGCGGAGACTTTTC 131
Query 178 ---CAGATTGACAAATTGAATTAAAGATCTTGAATACATATGGCTTCTGTGGGAACATTA 234
||||||||| |||||||| |||| ||||| | |||||||||||||||||||||||
Sbjct 132 AGACAGATTGACGAATTGAATCAAAGTTCTTG---A-ATATGGCTTCTGTGGGAACATTA 187
Query 235 CCAGCTTCTTCTATGGCTACAAAACAAAGCAATGCTTCTATATGCGCTGAAAAATTACCT 294
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 188 CCGGCTTCTTCTATGGCTACAAAACAAAGCAATGCTTCCATATGCGCTGAAAAACTACCT 247
Query 295 GAAGGGATTAATGAGATGAAGATAAAAGATGATAAGGAAATGGAAGCAGCTGTGGTTGAT 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 GAAGGGATTAATGAGATGAAGATAAAAGATGATAAGGAAATGGAAGCAGCTGTGGTTGAT 307
Query 355 GGGAATGGAACTGAAACAGGTCACATTATTGTTACAACTATTGGTGGTAAAAATGGTCAG 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 GGGAATGGAACTGAAACAGGTCACATTATTGTTACAACTATTGGTGGTAAAAATGGTCAG 367
Query 415 CCTAAACAGACCATAAGTTATATGGCAGAGCGCATCGTTGGACAAGGTTCTTTTGGAATC 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 CCTAAACAGACCATAAGTTATATGGCAGAGCGCATCGTTGGACAAGGTTCTTTTGGAATT 427
Query 475 GTTTTTCAGGCCAAGTGTTTAGAAACGGGGGAAACTGTTGCAATCAAGAAAGTTTTGCAA 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 GTTTTTCAGGCCAAGTGTTTAGAAACGGGGGAAACTGTTGCAATCAAGAAAGTTTTGCAA 487
Query 535 GACAAGAGATACAAGAATCGGGAGCTGCAGACAATGCGTCTTCTTGATCACCCTAATGTT 594
||||| ||||||||||| || ||||||||||| ||| | |||||||||||||||||||||
Sbjct 488 GACAAAAGATACAAGAACCGTGAGCTGCAGACGATGAGGCTTCTTGATCACCCTAATGTT 547
Query 595 GTATCCCTCAAGCATTGTTTTTTCTCAACGACTGAAAAAGATGAGCTCTATCTCAATCTG 654
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||
Sbjct 548 GTATCCCTCAAGCATTGTTTTTTCTCAACGACCGAAAAAGATGAGCTGTATCTCAATTTG 607
Query 655 GTCCTTGAATACGTTCCTGAGACTGTCTATCGCGTCTCAAAGCACTATAGTCGGGCAAAC 714
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 608 GTCCTTGAATACGTTCCTGAGACTGTATATCGCGTCTCAAAGCACTACAGTCGGGCAAAC 667
Query 715 CAGAGGATGCCCATTATATATGTTAAACTCTATACTTATCAGATTTGCAGAGCTTTGGCT 774
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 668 CAGAGGATGCCCATGATATATGTTAAACTCTACACTTATCAGATTTGCAGAGCTTTGGCT 727
Query 775 TATATTCATGGTGGAGTAGGAGTCTGCCACAGAGACATAAAACCACAGAATCTTCTGGTT 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 TATATTCATGGTGGAGTAGGAGTCTGCCACAGAGACATAAAACCACAGAATCTTCTGGTT 787
Query 835 AATCCTCATACGCATCAGGTCAAACTATGCGATTTTGGTAGCGCAAAAGTTCTGGTTAAA 894
||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |||
Sbjct 788 AATCCTCATACGCATCAAGTCAAGCTCTGCGATTTTGGTAGCGCAAAAGTTCTGGTCAAA 847
Query 895 GGCGAGCCAAACATCTCATACATCTGCTCCCGTTACTATCGAGCACCTGAACTTATATTT 954
||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 848 GGCGAACCAAACATCTCTTACATCTGCTCCCGTTACTATCGAGCGCCTGAACTTATATTT 907
Query 955 GGAGCTACAGAATATACAACAACAATTGACATATGGTCTGCAGGCTGTGTTCTTGCTGAA 1014
||||| ||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 908 GGAGCCACAGAGTATACGACAGCTATTGACATATGGTCTGCAGGCTGTGTTCTTGCTGAA 967
Query 1015 TTGCTTCTGGGACAGCCTCTATTTCCAGGTGAGAGTGGAGTTGACCAGCTAGTTGAGATA 1074
||||| || || |||||| |||||||||||||||||||||| ||||||||||| ||||||
Sbjct 968 TTGCTCCTTGGTCAGCCTTTATTTCCAGGTGAGAGTGGAGTCGACCAGCTAGTCGAGATA 1027
Query 1075 ATAAAGGTTCTTGGAACACCAACACGGGAGGAAATCAAATGCATGAATCCAAACTACACA 1134
|| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1028 ATTAAGGTTCTTGGAACACCAACCCGGGAGGAAATCAAATGCATGAATCCAAATTACACT 1087
Query 1135 GAATTCAAATTCCCGCAAATAAAGGCTCATCCTTGGCACAAAATATTCCATAAGCGTACA 1194
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 GAATTCAAATTCCCTCAAATAAAGGCTCATCCTTGGCACAAAATATTCCATAAGCGTACA 1147
Query 1195 CCTCCAGAAGCTGTAGACCTTGTCTCAAGACTTCTCCAGTATTCTCCAAACCTCAGATCA 1254
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1148 CCTCCAGAAGCTGTAGACCTCGTCTCAAGACTTCTCCAGTATTCTCCAAACCTCAGATCA 1207
Query 1255 ACCGCTATGGAGGCGATAGTTCACCCGTTCTTCGATGAGCTACGTGATCCCAATACACGT 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 ACCGCTATGGAGGCGATAGTTCACCCGTTCTTCGATGAGCTACGTGATCCCAATACACGT 1267
Query 1315 CTTCCTAATGGTCGTGCC-TTGCCTCCTCTCTTCAACTTTAAACCTCAAGAGCTAAAAGG 1373
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 CTTCCTAATGGTCGC-CCATTGCCTCCTCTCTTCAACTTTAAACCTCAAGAGCTAAAAGG 1326
Query 1374 AGCAAGTTTAGAGTTGTTGTCCAAGCTTATACCTGACCACGCCCGAAAACAATGTTCCTT 1433
|||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1327 AGCAAGTTCAGAGTTGTTTTCCAAGCTTATACCTGACCACGCCAGAAAACAATGTTCCTT 1386
Query 1434 CCTCGctctctaaatctct-tc-ctctctctct------ATATATAtgtgtgtgtgtgtg 1485
||||||||||||||||||| || |||||||||| |||||||| | | | ||||||
Sbjct 1387 CCTCGCTCTCTAAATCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATGTGTG 1446
Query 1486 tATGTACACATGCATATA 1503
||||||||||||||||||
Sbjct 1447 TATGTACACATGCATATA 1464
Score = 52.8 bits (28), Expect = 8e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1520 TAAGTAATGGAGATAGCTTCTCAGGATT 1547
||||||||||||||||||||||||||||
Sbjct 1465 TAAGTAATGGAGATAGCTTCTCAGGATT 1492
> Ahg475455 jgi|Araly1|475455|fgenesh2_kg.2__585__AT1G57870.1
Length=1829
Score = 422 bits (228), Expect = 5e-117
Identities = 745/990 (75%), Gaps = 54/990 (5%)
Strand=Plus/Plus
Query 405 AAATGGTCAGCCTAA-ACAGACCA-TAAGTTATATGGCAGAGCGCATCGTTGG-ACAAGG 461
||||||||| | || ||||| || | ||||| || ||||| | | | ||||| || ||
Sbjct 559 AAATGGTCAATC-AAGACAGA-CAGTCAGTTACATAGCAGAACACGTAGTTGGAAC-TGG 615
Query 462 TTCTTTTGGAATCGTTTTTCAGGCCAAGTGTTTAGAAACGGGGGAAACTGTTGCAATCAA 521
||| |||||||| ||||| || || || || |||||| ||||| |||||| |||||
Sbjct 616 TTCCTTTGGAATGGTTTTCCAAGCTAAATGCAGAGAAACTGGGGAGGTTGTTGCCATCAA 675
Query 522 GAAA-GTTTTGCAAGACAAGAGATACAAGAATC-GGGAGCTGCAGACAATGC-GTCTTCT 578
||| ||| | ||||||||| | |||||||| | |||| | || | |||| | | ||
Sbjct 676 -AAAGGTTCTACAAGACAAGCGCTACAAGAA-CAGGGAATTACAAATTATGCAG-ATGCT 732
Query 579 TGATCACCCTAATGTTGTATCCCTCAAGCATTG-TTTTTTCTCAACG-ACTGAAAAAGAT 636
|| || || |||||||| | | |||||| | || | | |||| | || ||||| ||
Sbjct 733 AGACCATCCGAATGTTGTTTGTTTAAAGCATAGCTTCTAT-TCAA-GAACAGAAAATGAA 790
Query 637 GAGCTCTATCTCAATCTGGTCCTTGAATACGTTCCTGAGACTGTCTATCGCGT-CT--CA 693
||| | ||||| ||||| |||||||||| ||||| ||||||||| || ||| || ||
Sbjct 791 GAGGTTTATCTAAATCTTGTCCTTGAATTTGTTCCCGAGACTGTCAAT--CGTACTGCCA 848
Query 694 -AAGCACTATAGTCGGGCAAACCAGAGGATGCCCATT-ATATATGTTAAACTCTATACTT 751
||| ||| ||| | |||||| |||| ||||| |||||||| |||||||| |||
Sbjct 849 GAAG--CTACAGTAGAATGAACCAGCTGATG-CCATTGATATATGTCAAACTCTACGCTT 905
Query 752 ATCAGATTTGCA--GAGCTTTGGCTTATATTCAT-GGTGGAGTAGGAGTCTGCCACAGAG 808
|||||||||||| | || || ||||| ||||| || || || | || ||| | |
Sbjct 906 ATCAGATTTGCAGGGGGC-TT-GCTTACCTTCATAATTGCTGT-GGTCTTTGTCACCGGG 962
Query 809 ACATAAAACCACAGAATCTTCTGGTTAATCCTCATACGCATCAGGTCAAACTATGCGATT 868
| || || || || || || || || ||||| || || |||||| | ||| | || ||||
Sbjct 963 ATATTAAGCCCCAAAACCTGCTAGTGAATCCACACACACATCAGCTAAAAATTTGTGATT 1022
Query 869 TTGGTAGCGCAAAAGT-TCTGGTTAAAGGCGAGCCAAACATCTCATACATCTGCTCCCGT 927
|||| || |||||||| | |||| ||||| || || || || || ||||| || || |
Sbjct 1023 TTGGGAGTGCAAAAGTGT-TGGTGAAAGGAGAACCCAATATTTCTTACATTTGTTCAAGA 1081
Query 928 TACTATCGAGCACCTGAACTTATATTTGGAGCTACAGAATATACAACAACAATTGACATA 987
|||||||| || || || || || |||||||| || || || ||||| |||| ||||||
Sbjct 1082 TACTATCGTGCCCCAGAGCTCATTTTTGGAGCCACTGAGTACACAACTGCAATAGACATA 1141
Query 988 TGGTCTGCAGGCTGTGTTCTTGCTGAATTGCTTCTGGGACAGCCTCTATTTCCAGGTGAG 1047
||||| |||| ||||| | |||||| |||| || ||||||||||| ||||| || ||
Sbjct 1142 TGGTCCACAGGTTGTGTGATGGCTGAACTGCTGCTTGGACAGCCTCTGTTTCCTGGCGAA 1201
Query 1048 AGTGGAGTTGACCAGCTAGTTGAGATAATAAAGGTTCTT-GGAACACCAACACGGGAGGA 1106
|||||||| ||||| || ||||| || || |||||| || || ||||||||| |||||||
Sbjct 1202 AGTGGAGTCGACCAACTTGTTGAAATCATTAAGGTT-TTGGGTACACCAACAAGGGAGGA 1260
Query 1107 AATCAAATGCATGAATCCAAACTACACAGAATTCAAATT-CCCGCAAATAAAGGCTCATC 1165
|||||||||||||||||||||||||||||||| ||||| ||| || ||||| ||||||
Sbjct 1261 GATCAAATGCATGAATCCAAACTACACAGAATTTAAATTTCCC-CAGATAAAACCTCATC 1319
Query 1166 CTTGGCACAAAATATTCCATAAGCGTACACCTCCAGAAGCTGTAGACCTTGTCTCAAGAC 1225
|||||||||| | ||||| || ||| || || ||||| ||||| ||| | | ||
Sbjct 1320 CTTGGCACAAGGTTTTCCAAAAACGTTTGCCACCTGAAGCAGTAGATCTTCTTTGTAGG- 1378
Query 1226 TTCT-CCAGTATTCTCCAAACCTCAGAT-CAACCGCTATGGAGGCGATAGT-TC-ACCCG 1281
|||| |||||||||||| || | |||| || | || |||| || | || || | |||
Sbjct 1379 TTCTTCCAGTATTCTCCTAATTTGAGATGCA-CAGCGGTGGAAGCT-T-GTATCCATCCG 1435
Query 1282 TTCTTCGATGAGCTACGTGATCCCAATACAC--GTCTTCCTAATGGTCGTGCC--TTGCC 1337
||||| ||||||||| | || ||||| || | ||||||| || || || ||| || ||
Sbjct 1436 TTCTTTGATGAGCTAAGAGA-CCCAA-ACGCTCGTCTTCCAAACGGCCG-GCCACTT-CC 1491
Query 1338 TCCTCTCTTCAACTTTAAACCTCAAGAGCT 1367
||| || ||||| |||||||| ||||||||
Sbjct 1492 TCCACTTTTCAATTTTAAACCGCAAGAGCT 1521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64486784785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5