BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G14660.1 Length=1288 Score E Sequences producing significant alignments: (Bits) Value Ahg893370 jgi|Araly1|893370|Al_scaffold_0006_1366 1291 0.0 > Ahg893370 jgi|Araly1|893370|Al_scaffold_0006_1366 Length=822 Score = 1291 bits (699), Expect = 0.0 Identities = 781/822 (95%), Gaps = 0/822 (0%) Strand=Plus/Plus Query 76 ATGGCCGTCTGTAACTGCTTCCTCCAAGCTCCACCACTCTCTCGCATACTCCTACCGGTT 135 ||||||||||||||||||||||||||||||||||||||||||||| || || |||||||| Sbjct 1 ATGGCCGTCTGTAACTGCTTCCTCCAAGCTCCACCACTCTCTCGCTTATTCTTACCGGTT 60 Query 136 TTATCTCGCCGAGCTACTACTCTCTCTGCCGGTTATGGTCGGCTCAAATCCACGGTCACG 195 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| | Sbjct 61 TTATCTCGCCGAGCTACTACACTCTCTGCCGGTTATGGTCGGCTCAAATCCACCGTCATG 120 Query 196 TTCTGCTCTACTGTGAACCGGACCAGTCCTCTGACATCTTCGGTCCGCGCAGAAGTAAAG 255 ||||||||||||| |||||||||||||| ||||| |||| |||| ||||| ||||||||| Sbjct 121 TTCTGCTCTACTGGGAACCGGACCAGTCTTCTGATATCTCCGGTTCGCGCTGAAGTAAAG 180 Query 256 CGCGTCTCGCGTAAAGACGATAAAGTAGCTTCAGCTACTGATGTTCAATTTGAGACGCCT 315 |||||||| |||||||||| | |||||||||||||| ||||| ||||||||||||| ||| Sbjct 181 CGCGTCTCACGTAAAGACGTTGAAGTAGCTTCAGCTTCTGATCTTCAATTTGAGACTCCT 240 Query 316 TTGAAGATTGTTGAGTATCCGGATCCTATACTACGGGCTAAGAACAAGAGGATTGATATT 375 |||| |||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 241 TTGAGGATTGTTGAGTATCCGGATCCTATACTACGGGCTAAGAACAAGAGGATTGGTGTT 300 Query 376 TTTGACGAGAATTTAAAGAACTTGGTTGATGCTATGTTTGATGTTATGTACAAAACGGAT 435 || ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TTCGACCAGAATTTGAAGAACTTGGTTGATGCTATGTTTGATGTTATGTACAAAACGGAT 360 Query 436 GGCATTGGGCTCTCAGCACCACAAGTAGGTCTCAATGTTCAACTCATGGTGTTTAATCCA 495 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 361 GGTATTGGGCTCTCAGCACCACAAGTAGGTCTCAATGTTCAACTTATGGTGTTTAATCCA 420 Query 496 GCTGGAGAGCCTGGAGAAGGAAAAGAAATTGTCCTTGTAAATCCGAAAATCAAGAAATAT 555 ||||| |||||||| |||||| |||||||||| ||||||||||||| |||||||||||| Sbjct 421 GCTGGGGAGCCTGGTGAAGGAGAAGAAATTGTTCTTGTAAATCCGATTATCAAGAAATAT 480 Query 556 TCCGATAAATTAGTACCGTTTGATGAAGGATGCCTCTCCTTCCCGGGGATCTATGCTGAA 615 |||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 481 TCCGATAAGTTAGTACCGTTTGATGAAGGATGCCTATCCTTCCCCGGGATCTATGCTGAA 540 Query 616 GTTGTTCGACCACAATCTGTCAAGATTGATGCAAGGGATATTACTGGTGAAAGATTTTCA 675 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 541 GTAGTTCGACCACAATCTGTCAAGATTGATGCAAGGGACATTACTGGTGAAAGATTTTCA 600 Query 676 ATCAGTCTATCACGTTTACCTGCACGAATCTTTCAGCACGAATACGACCATCTGGAGGGA 735 || |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 601 ATTAGTCTATCTCGTTTACCTGCACGAATCTTTCAGCACGAATATGACCATCTGGAGGGA 660 Query 736 GTTCTCTTCTTTGACAGAATGACGGATCAAGTTCTTGATAGCATTCGTGAAGAGCTAGAG 795 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 GTTCTCTTCTTTGACAGAATGACGGATCAAGTTCTTGATAGCATTCGTGAAGAGCTAGAG 720 Query 796 GCCCTAGAAAAGAAGTACGAAGAAAAAACTGGATTGCCAAGCCCTGAAAGAGTAGAAGCA 855 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 721 GCCCTAGAAAAGAAGTACGAAGAAAAAACTGGATTGCCAAGCCCTGAAAGAGTACAAGCA 780 Query 856 CGACAAAAAAGGAAAGCAGGAGTTGGTTTTGGCAAACGTTGA 897 |||||||||||||||||||||||||||||||||||||||||| Sbjct 781 CGACAAAAAAGGAAAGCAGGAGTTGGTTTTGGCAAACGTTGA 822 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48149244171 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5