BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G14720.1 Length=2843 Score E Sequences producing significant alignments: (Bits) Value Ahg488313 jgi|Araly1|488313|fgenesh2_kg.6__1447__AT5G14720.1 2128 0.0 > Ahg488313 jgi|Araly1|488313|fgenesh2_kg.6__1447__AT5G14720.1 Length=2623 Score = 2128 bits (1152), Expect = 0.0 Identities = 1296/1362 (95%), Gaps = 24/1362 (2%) Strand=Plus/Plus Query 1 CAGACGACAGAAAAGCTAAC--CACAAGAGGAGGAGAGAAACTCGATAACAAACAAGAGA 58 |||||||||||||||||||| |||||||||||||||||||||| || ||| Sbjct 1 CAGACGACAGAAAAGCTAACAACACAAGAGGAGGAGAGAAACTC---AA-TAAC------ 50 Query 59 AAGAGAAAGCGAGATTCTAAAATCTAATCTCGTGCTTCCAATTCAAATAATTTTGTCTCC 118 | || | ||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 51 ----G-AA-CAAGATTCTTTAATCTAATCTCGTGCTTCCAATTTAAATAATTTTGTCTCC 104 Query 119 TTAGCGGATCGATCGTAGATTATAAAGCTCCGCCGTCGCCTCCGCCGCAATCGACGGCGG 178 ||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 105 TTAGCGGATCGATTGCAGATTATCAAGCTCCGCCGTCGCCTCCGCCGCAATCGACGGCGG 164 Query 179 TGTCTACGTCGCTTTCGTTTCGTGCGTAACAGGAGGAGCAGCAGCAAAATAAGTCAGCTT 238 ||||||||||||||||| ||||||||||||||||| |||||||||| || |||||||||| Sbjct 165 TGTCTACGTCGCTTTCGATTCGTGCGTAACAGGAGCAGCAGCAGCAGAAGAAGTCAGCTT 224 Query 239 AAGTAACGCCGTCTTTGATTTGACTTGAGATAAGTATT-TTGGTGATATGGCATTGATGA 297 ||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 225 AAGTAACGCCGCCTTTGATTTGACTTGAGATAAGT-TTGTTGGTGATATGGCATTGATGA 283 Query 298 TGTTTCCGCATTTGCTCGACGTTGACGAAAAGTAAAATGCTGGCGAATTGGAAGAAACCA 357 |||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 284 TGTTTCCGTATTTGCTCGGCGTTGAAGAAAAGTAAAATGCTGGCGAATTGGAAGAAACCA 343 Query 358 CATACAGATTGATGCTCTCTTCAGTCGACCTCTTTTGTAAATTTGTTGAAACTTACGGGG 417 | |||||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 344 CGCACAGATTGATGCTCTCTTCAGTCGACCTCTTTTGTATATTTACTGAAACTTACGGGG 403 Query 418 TCGAAGGTGTGTAGCATATATGCTATAAGAAGATTATAAAGTAAAAATTATGGAATCGGG 477 ||||||||||||||| ||||||| ||||||||| | ||||| ||||||||||||||||| Sbjct 404 TCGAAGGTGTGTAGC--ATATGCTTTAAGAAGATAAAAAAGTGAAAATTATGGAATCGGG 461 Query 478 TTCAGAGAAAAAGTTCCCTCTCAATGCAAAAGACTACAAGTTATATGAAGAAATTGGAGA 537 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 462 TTCAGAGAAAAAGTTTCCTCTCAATGCAAAAGACTACAAGTTATATGAAGAAATTGGAGA 521 Query 538 TGGTGTCAGTGCGACTGTGCATAGAGCTTTGTGTATACCGCTTAATGTGGTAGTTGCTAT 597 ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 522 TGGTGTCAGTGCGACAGTGCACAGAGCTTTGTGCATACCGCTTAATGTGGTAGTTGCTAT 581 Query 598 CAAGGTTCTTGATCTGGAAAAGTGCAACAACGATCTGGATGGGATCCGGAGAGAGGTGCA 657 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 582 CAAGGTTCTTGATTTGGAAAAGTGCAACAACGATTTGGATGGGATCCGGAGAGAGGTGCA 641 Query 658 AACAATGAGTCTGATCAACCATCCAAATGTGTTGCAAGCTCATTGCTCATTTACCACCGG 717 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 642 AACAATGAGTCTGATCAACCATCCAAATGTGTTGCAAGCTCATTGCTCATTTACCGCCGG 701 Query 718 ACACCAGCTTTGGGTTGTGATGCCTTACATGGCTGGAGGATCTTGTCTCCATATAATTAA 777 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 702 ACACCAGCTTTGGGTTGTGATGCCTTACATGGCTGGAGGATCCTGTCTCCATATAATAAA 761 Query 778 GTCTTCCTATCCAGATGGATTTGAGGAACCTGTTATCGCTACTTTACTTCGTGAGACTCT 837 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 762 GTCTTCATATCCAGATGGATTCGAGGAACCTGTTATCGCTACTTTACTTCGTGAGACTCT 821 Query 838 GAAAGCTCTTGTATATCTTCATGCTCATGGGCATATCCACAGGGATGTGAAGGCTGGAAA 897 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 822 GAAAGCTCTTGTATATCTTCATGCTCATGGGCATATCCACAGGGATGTAAAGGCTGGAAA 881 Query 898 CATTTTATTGGATTCCAATGGTGCCGTTAAGTTAGCAGACTTTGGAGTATCAGCTTGCAT 957 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 882 CATTTTATTGGATTCCAATGGTGCCGTTAAGTTGGCAGACTTTGGAGTATCAGCTTGCAT 941 Query 958 GTTTGATACGGGAGATAGACAACGTTCCAGAAATACATTTGTTGGGACTCCATGCTGGAT 1017 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 942 GTTTGATACGGGAGATAGACAACGTTCCAGAAATACATTCGTTGGGACTCCATGCTGGAT 1001 Query 1018 GGCTCCTGAAGTCATGCAGCAACTACATGGATATGATTTCAAAGCAGATGTATGGTCATT 1077 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1002 GGCTCCTGAAGTCATGCAGCAACTACATGGTTATGATTTCAAAGCAGATGTATGGTCATT 1061 Query 1078 TGGAATAACAGCACTTGAATTGGCACATGGTCATGCCCCATTTTCCAAATATCCGCCAAT 1137 ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct 1062 TGGAATAACAGCACTTGAACTGGCACATGGTCATGCCCCATTTTCTAAATATCCGCCAAT 1121 Query 1138 GAAGGTTTTGCTGATGACCTTACAAAATGCACCTCCTGGACTTGACTACGAGAGAGACAA 1197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1122 GAAGGTTTTGCTGATGACCTTACAAAATGCACCTCCTGGACTTGACTACGAGAGAGACAA 1181 Query 1198 AAGATTCTCGAAAGCCTTCAAGGAAATGGTGGGTACATGCCTGGTGAAGGACCCAAAGAA 1257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1182 AAGATTCTCGAAAGCCTTCAAGGAAATGGTGGGTACATGCCTGGTGAAGGACCCAAAGAA 1241 Query 1258 GCGTCCAACTTCAGAAAAGCTTTTGAAA-CACCCTTTCTTCAAACATGCACGTCCAGCTG 1316 |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 1242 GCGTCCAACTTCAGAAAAGCTTTT-AAAGCACCCTTTCTTCAAACATGCACGTCCAGCTG 1300 Query 1317 ATTACCTGGTTAAAACAATTCTAAATGGTCTTCCTCCATTAG 1358 |||||||||||||||||||||||||||||||||||||||||| Sbjct 1301 ATTACCTGGTTAAAACAATTCTAAATGGTCTTCCTCCATTAG 1342 Score = 1755 bits (950), Expect = 0.0 Identities = 1032/1073 (96%), Gaps = 0/1073 (0%) Strand=Plus/Plus Query 1441 GCAAGAGTATATAAGGGGAATAAGCGCTTGGAATTTCAATCTCGAGGACCTAAAAACTCA 1500 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1362 GCAAGAATACATAAGGGGAATAAGCGCTTGGAATTTCAATCTCGAGGACCTAAAAACTCA 1421 Query 1501 AGCTGCCCTTATTTCAGATGATGATACTTCACATGCTGAAGAGCCCGATTTCAACCAAAA 1560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1422 AGCTGCCCTTATTTCAGATGATGATACTTCACATGCTGAAGAGCCCGATTTCAACCAAAA 1481 Query 1561 GCAATGTGAAAGACAGGATGAATCTGCTCTTTCCCCTGAAAGGGCTAGCAGCTCAGCAAC 1620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1482 GCAATGTGAAAGACAGGATGAATCTGCTCTTTCCCCTGAAAGGGCTAGCAGCTCAGCAAC 1541 Query 1621 AGCTCCTAGTCAAGATGACGAACTGAATGATATTCATGATTTAGAGAGTTCTTTCGCCTC 1680 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1542 AGCTCCTAGTCAAGATGACGAACTGAACGATATTCATGATTTAGAGAGTTCTTTCGCCTC 1601 Query 1681 ATTTCCAATCAAACCTCTTCAAGCACTAAAAGGCTGCTTTGATATCAGTGAGGACGAGGA 1740 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1602 ATTTCCAATCAAACCTCTTCAAGCACTCAAAGGCTGCTTTGATATCAGTGAGGACGAGGA 1661 Query 1741 TAATGCAACTACTCCTGATTGGAAAGATGCTAATGTAAATTCTGGACAACAGCTTTTAAC 1800 |||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||| Sbjct 1662 TAATGCAACTACTCCTGATTGGAAAGATGCAAATTTAAATTCTGGACAACAGCATTTAAC 1721 Query 1801 AAAGGCTTCCATTGGATCTTTGGCCGAAACCACGAAAGAAGAGGACACTGCAGCACAAAA 1860 ||||||||||||||||||| |||| || |||||||||||||| ||||||||||||||||| Sbjct 1722 AAAGGCTTCCATTGGATCTCTGGCTGATACCACGAAAGAAGAAGACACTGCAGCACAAAA 1781 Query 1861 CACTTCTTTACCACGTCATGTCATTTCTGAACAGAAAAAATATTTGAGCGGTTCAATTAT 1920 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1782 CACTTCTTTACCACGTCATGTCATTTCCGAACAGAAAAAATATTTGAGCGGTTCAATTAT 1841 Query 1921 ACCAGAGAGTACTTTCTCTCCAAAAAGAATCACATCTGATGCTGATAGGGAGTTTCAACA 1980 ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 1842 ACCAGAGAGTACTTTCTCTCCAAAAAGAATCACATCTGAGGCTGACAGGGAGTTTCAACA 1901 Query 1981 GCGTAGATATCAAACAGAGCGGAGCTACAGCGGATCATTATACCGCACCAAGAGAGATTC 2040 ||||||||||||||||||||||||||||||||||||||| || ||||| || || ||||| Sbjct 1902 GCGTAGATATCAAACAGAGCGGAGCTACAGCGGATCATTGTATCGCACAAAAAGGGATTC 1961 Query 2041 CGTGGACGAGACGTCAGAAGTCCCGCATGTGGAGCACAAGGGACGGTTTAAGGTCACATC 2100 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1962 TGTGGACGAGACGTCAGAAGTCCCGCATGTGGAGCACAAGGGACGGTTTAAGGTTACATC 2021 Query 2101 AGCAGATCTGAGTCCCAAGGGATCTACAAACTCTACATTCACACCATTTAGTGGTGGTAC 2160 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2022 AGCAGATCTAAGTCCCAAGGGATCTACAAACTCTACATTCACACCATTTAGTGGTGGTTC 2081 Query 2161 AAGCAGCCCTAGTTGCCTCAATGCTACAACCGCCTCAATCCTCCCATCAATTCAGTCGAT 2220 ||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 2082 AAGCAGCCCGAGTTCCCTCAATGCGACAACCGCCTCAATCCTTCCATCAATTCAGTCGAT 2141 Query 2221 TTTGCAGCAAAATGCTATGCAACGGGAAGAGATTTTGAGACTAATCAAATACTTGGAGCA 2280 |||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2142 TTTGCAGCAAAACGCCATGCAACGGGAAGAGATTTTGAGACTAATCAAATACGTGGAGCA 2201 Query 2281 AACCTCTGCCAAGCAACCTGGATCGCCTGAGACGAACGTCGATGACCTATTGCAGACGCC 2340 |||||||||||||||||||||||| || ||||| || |||||||| ||| ||||||| || Sbjct 2202 AACCTCTGCCAAGCAACCTGGATCCCCCGAGACAAATGTCGATGAGCTACTGCAGACACC 2261 Query 2341 TCCTGCAACCTCACGAGAGAGAGAACTTCAGTCTCAAGTCATGCTACTACAACAAAGCTT 2400 ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 2262 TCCTGCAACGTCACGAGAGAGAGAACTTCAGTCCCAAGTGATGCTACTACAACAAAGCTT 2321 Query 2401 TTCCAGCCTAACAGAAGAACTAAAGAAACAGAAGCAGAAAAATGGGCAGTTGGAGAATCA 2460 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2322 TTCGAGCCTAACAGAAGAACTAAAGAAACAGAAGCAGAAAAATGGGCAGTTGGAGAATCA 2381 Query 2461 GTTGAACGCATTAACACACAGAAATGATTGAGTCTCAAAAGCCATCGAGACAA 2513 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2382 GTTGAACGCATTAACACACAGAAATGATTGAGTCTCAAAAGCCATCGAGACAA 2434 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 107300220165 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5