BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G14740.1 Length=1514 Score E Sequences producing significant alignments: (Bits) Value Ahg488319 jgi|Araly1|488319|fgenesh2_kg.6__1453__AT5G14740.2 1875 0.0 Ahg477371 jgi|Araly1|477371|fgenesh2_kg.3__72__AT3G01500.2 821 0.0 > Ahg488319 jgi|Araly1|488319|fgenesh2_kg.6__1453__AT5G14740.2 Length=1407 Score = 1875 bits (1015), Expect = 0.0 Identities = 1222/1315 (93%), Gaps = 41/1315 (3%) Strand=Plus/Plus Query 207 TAATCTGTACAAAGATGTTGTGTTCTCATAAAAAATTCAA--TTTTGTAAAGAAGCTCTA 264 |||||||||||||||||||||| ||||||| | | ||||| ||||||||| |||||| | Sbjct 101 TAATCTGTACAAAGATGTTGTGCTCTCATATACAGTTCAATTTTTTGTAAACAAGCTCAA 160 Query 265 CATGTTCCT-TGCTCTGTAAACATGGTCCCCTTTTGGACTACAGTTTCTCGAAATGGCTC 323 |||||| || |||||||||||| |||||||||||||| ||||| |||||||||||||||| Sbjct 161 CATGTT-CTGTGCTCTGTAAACTTGGTCCCCTTTTGGGCTACATTTTCTCGAAATGGCTC 219 Query 324 ATCAGACTCAGAGACGACTCTC-CAATCTGCTTCAAAAGCCACAAAACAGTATAAATATC 382 |||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||| Sbjct 220 ATCAGACTCAGAGACGACTCTCTC-ATCTGCTTCAGAAGCCACAAAACAGTATAAATATC 278 Query 383 CTTCTCTTCGTCC---CTCTCATCGCCTGTCTCTCCTCTTCCTCTTCCCGTTCCATTTAT 439 ||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||| Sbjct 279 CTTCTCTTCGTCCATTATCTCATCGCCTGTCTCTCCTCTTCCTCTTCTCGTTCCGTTTAT 338 Query 440 CCGCAAACGGAGCTTGTTTTCGGTGCACCTGCTTCAG-C--CACTTCAAACTT-GAACT- 494 ||||||||||||||||| |||| |||||||||||||| | |||||||| || | | | Sbjct 339 CCGCAAACGGAGCTTGTGTTCGTTGCACCTGCTTCAGTCATCACTTCAATTTTGGTA-TA 397 Query 495 G-AGAAGGATGGGAAACGAATCATATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCA 553 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 398 GAAGAAGGATGGGAAACGAATCATATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCA 457 Query 554 TTGAGAAGGATGATCTGAAGGATGTAGCTGCGGCCAAGGTGAAGAAGATCACGGCGGAGC 613 ||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||| Sbjct 458 TTGAGAAGGATGAGCTGAAGGATGTAGCTGCGGCCAAAGTGAAAAAGATCACCGCGGAGC 517 Query 614 TTCAGGCAGCCTCGTCATCGGACAGCAAATCTTTTGATCCCGTCGAACGAATTAAGGAAG 673 ||||| ||| |||||| || |||| ||| ||||| ||||||||||||||||||||||||| Sbjct 518 TTCAGACAGTCTCGTCGTCCGACAACAAGTCTTTCGATCCCGTCGAACGAATTAAGGAAG 577 Query 674 GCTTCGTCACCTTCAAGAAGGAGAAATACGAGACCAATCCTGCTTTGTATGGTGAGCTCG 733 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 578 GCTTCGTCACCTTCAAGAAGGAGAAATACGAGACCAATCCTGCTTTGTACGGTGAGCTCG 637 Query 734 CCAAAGGTCAAAGCCCAAAGTACATGGTGTTTGCTTGTTCGGACTCACGAGTGTGCCCAT 793 | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 638 CTAAAGGTCAAAGCCCAAAGTACATGGTGTTTGCTTGTTCGGACTCGCGAGTGTGCCCAT 697 Query 794 CACACGTACTAGACTTCCATCCTGGAGATGCCTTCGTGGTTCGTAATATCGCCAATATGG 853 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 698 CACATGTACTAAACTTCCATCCTGGAGATGCCTTCGTGGTTCGTAATATCGCCAATATGG 757 Query 854 TTCCTCCTTTTGACAAGGTCAAATATGCAGGAGTTGGAGCCGCCATTGAATACGCTGTCT 913 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 758 TTCCTCCTTTTGACAAGGTCAAATATGCAGGAGTTGGAGCCGCCATTGAATATGCTGTCT 817 Query 914 TGCACCTTAAGGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGG 973 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 818 TGCACCTTAAGGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGG 877 Query 974 GGCTTATGTCATTTCCTCTTGACGGAAACAACTCTACTGACTTCATAGAGGATTGGGTCA 1033 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 878 GGCTTATGTCATTTCCTCTTGACGGAAACAACTCTACTGATTTCATAGAGGATTGGGTGA 937 Query 1034 AAATCTGTTTACCAGCAAAGTCAAAAGTTTTGGCAGAAAGTGAAAGTTCAGCATTTGAAG 1093 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 938 AAATCTGTTTACCAGCAAAGTCAAAAGTTTTGGCAGAAAGTGAAAGTTCAGCATTTGAGG 997 Query 1094 ACCAATGTGGCCGATGCGAAAGGGAGGCAGTGAATGTGTCACTAGCAAACCTATTGACAT 1153 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 998 ACCAATGTGGCCGATGCGAAAGGGAGGCAGTGAATGTATCACTAGCAAACCTATTGACAT 1057 Query 1154 ATCCATTTGTGAGAGAAGGAGTTGTGAAAGGAACACTTGCTTTGAAGGGAGGCTACTATG 1213 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1058 ATCCATTTGTGAGAGAAGGAGTCGTGAAAGGAACACTTGCTTTGAAGGGAGGCTACTATG 1117 Query 1214 ACTTTGTTAATGGCTCCTTTGAGCTTTGGGAGCTCCAGTTTGGAATTTCCCCCGTTCATT 1273 | ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 1118 ATTTTGTTAATGGCTCCTTTGAGCTTTGGGAACTCCAGTTTGGAATTTCACCCGTTCATT 1177 Query 1274 CTATATGAACTAacacatcaccatcaccatcgctaccaccacca---t---ca-ca-aa- 1324 |||||||||||||||||||||||||||| |||| |||||||||| | || || || Sbjct 1178 CTATATGAACTAACACATCACCATCACCGTCGCCACCACCACCACCGTGATCATCACAAG 1237 Query 1325 catcat-catc---gtcgtcatcatcatgatcagcatcttcatATATA-A-AT-----GT 1373 |||||| |||| ||||||||||||||||||| |||| ||||||||| | || || Sbjct 1238 CATCATGCATCATCGTCGTCATCATCATGATCACCATCATCATATATATATATATAATGT 1297 Query 1374 TTTACTCTTATTTAATTGCTACTTGTAATGGTATACATTTACTTGCGATGAGCTTCTTTT 1433 |||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| Sbjct 1298 TTTACTCTTATTTAATTGCTGTTTGTAATGG-A--CATTTACTTGCGATGAGCTTCTTTT 1354 Query 1434 CCTTCATTATCCAGTTATAAAATAAATAAATAAATCATGTTTACTTTCACAGATA 1488 ||||||||||||| |||||||||||||||| || |||| |||| ||||||||||| Sbjct 1355 CCTTCATTATCCACTTATAAAATAAATAAA-AA-TCATCTTTATTTTCACAGATA 1407 > Ahg477371 jgi|Araly1|477371|fgenesh2_kg.3__72__AT3G01500.2 Length=1314 Score = 821 bits (444), Expect = 0.0 Identities = 655/756 (87%), Gaps = 17/756 (2%) Strand=Plus/Plus Query 497 GAAG-GATGGGAAACGAATCATATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCATT 555 |||| |||||||| ||| |||| ||||| || || ||||||||||||||||||||||| Sbjct 370 GAAGAGATGGGAAGCGACGCATACGAAGAGGCTATTGAAGCTCTCAAGAAGCTTCTCATC 429 Query 556 GAGAAGGATGATCTGAAGGA-TGTAGCTGCGGCCAAGGTGAAGAAGATCACGGCGGAGCT 614 |||||||| || || || || || || ||||| |||||| || |||||||||||| ||| Sbjct 430 GAGAAGGAAGAGCT-AAAGACGGTTGCAGCGGCAAAGGTGGAGCAGATCACGGCGGCGCT 488 Query 615 TCAGGCAGCCT-CGTCATCGGAC-AGCAAATCTTTTGATCCCGTCGAACGA-ATTAAGGA 671 |||| ||| | | || || ||| || ||| |||| || ||||| ||| | |||||| | Sbjct 489 TCAGACAG-GTACTTCGTCCGACAAG-AAAGCTTTCGACCCCGTTGAA-AACATTAAGCA 545 Query 672 AGGCTTCGTCACCTTCAAGAAGGAGAAATACGAGACCAATCCTGCTTTGTATGGTGAGCT 731 |||||| ||| |||||||||||||||||||| ||||| ||||||||||| |||||||| Sbjct 546 GGGCTTCATCAAATTCAAGAAGGAGAAATACGAAACCAACCCTGCTTTGTACGGTGAGCT 605 Query 732 CGCCAAA-GGTCAAAGCCCAAAGTACATGGTGTTTGCTTGTTCGGACTCACGAGTGTGCC 790 || |||| |||||||| || ||||||||||||||||| |||||||||||||| ||||| | Sbjct 606 CG-CAAAGGGTCAAAGTCCTAAGTACATGGTGTTTGCGTGTTCGGACTCACGTGTGTGTC 664 Query 791 CATCACACGTACTAGACTTCCATCCTGGAGATGCCTTCGTGGTTCGTAATATCGCCAATA 850 |||||||||| || ||||| || || ||||||||||||||||| ||||| || ||||| | Sbjct 665 CATCACACGTTCTGGACTTTCAGCCAGGAGATGCCTTCGTGGTCCGTAACATAGCCAACA 724 Query 851 TGGTTCCTCCTTTTGACAAGGTCAAATATGCAGGAGTTGGAGCCGCCATTGAATACGCTG 910 ||||||||||||| |||||||||||||| | || |||||||| |||||||||||||| | Sbjct 725 TGGTTCCTCCTTTCGACAAGGTCAAATACGGTGGCGTTGGAGCAGCCATTGAATACGCGG 784 Query 911 TCTTGCACCTTAAGGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCA 970 ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| Sbjct 785 TCTTGCACCTTAAGGTGGAGAACATTGTGGTGATAGGACACAGTGCATGTGGTGGGATCA 844 Query 971 AGGGGCTTATGTCATTTCCTCTT-GACGGAAACAACTCTACTGACTTCATAGAGGATTGG 1029 | ||||||||||| ||||| ||| || ||||||||||| ||||||||||||||||| ||| Sbjct 845 AAGGGCTTATGTC-TTTCCCCTTAGATGGAAACAACTCCACTGACTTCATAGAGGACTGG 903 Query 1030 GTCAAAATCTGTTTACCAGCAAAGTCAAAAGTTTTGGCAGAAAGT-GAAAGTTCAGCATT 1088 |||||||||||||||||||| |||||||| ||| | ||||| | || | |||||| || Sbjct 904 GTCAAAATCTGTTTACCAGCCAAGTCAAAGGTTATATCAGAACTTGGAGA-TTCAGCCTT 962 Query 1089 TGAAGACCAATGTGGCCGATGCGAAAGGGAGGCAGTGAATGTGTCACTAGCAAACCTATT 1148 |||||| |||||||||||||| |||||||||||||||||||| ||| ||||||||||||| Sbjct 963 TGAAGATCAATGTGGCCGATGTGAAAGGGAGGCAGTGAATGTTTCATTAGCAAACCTATT 1022 Query 1149 GACATATCCATTTGTGAGAGAAGGAGTTGTGAAAGGAACACTTGCTTTGAAGGGAGGCTA 1208 ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 1023 GACATATCCATTTGTGAGAGAAGGACTTGTGAAGGGAACACTTGCTTTGAAGGGAGGCTA 1082 Query 1209 CTATGACTTTGTTAATGGCTCCTTT-GAGCTTTGGG 1243 ||||||||| |||| || | |||| |||||||||| Sbjct 1083 CTATGACTTCATTAAGGG-TGCTTTTGAGCTTTGGG 1117 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56678284560 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5