BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G14760.1 Length=2389 Score E Sequences producing significant alignments: (Bits) Value Ahg488323 jgi|Araly1|488323|fgenesh2_kg.6__1457__AT5G14760.1 3241 0.0 > Ahg488323 jgi|Araly1|488323|fgenesh2_kg.6__1457__AT5G14760.1 Length=2334 Score = 3241 bits (1755), Expect = 0.0 Identities = 1923/2004 (96%), Gaps = 12/2004 (1%) Strand=Plus/Plus Query 396 CAAATCCATTCAAAGAGCCCTCTTGGTCAAGTGGGGTATTTAAGGCTCTAAAAGCTGAGA 455 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 333 CAAATCCATTCAAAGAGCCCTCTTGGTCAAGTGGCGTATTTAAGGCTCTAAAAGCTGAGA 392 Query 456 GATGTGGTTGTTACTCTCGTGGTATTTCCCCCATCAGTGAGACCTCAAAA-C-----C-- 507 ||||||||||||||||||||||| |||| |||||| |||| ||||||| | | Sbjct 393 GATGTGGTTGTTACTCTCGTGGTGTTTCTGCCATCACCGAGAGCTCAAAACCTTGTACAA 452 Query 508 -TATCAGGGCTGTTTCGGTATCTTCTTCAACAAAGTATTATGATTTCACTGTGATTGGTA 566 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 453 GTATCAGGGCTGTTTCGGTATCCTCTTCAACAAAGTATTATGATTTCACTGTGATTGGCA 512 Query 567 GTGGAGTAGCGGGTCTGCGTTATGCTTTAGAAGTTGCAAAGCAAGGAACAGTCGCAGTGA 626 ||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 513 GTGGAGTTGCGGGTCTGCGTTATGCTTTAGAAGTTGCAAAGCAAGGAACAGTGGCTGTGA 572 Query 627 TTACCAAAGATGAGCCTCATGAGAGTAACACAAACTATGCTCAAGGTGGTGTTAGTGCTG 686 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 573 TTACCAAAGATGAGCCTCATGAGAGTAACACAAACTATGCTCAAGGTGGTGTTAGTGCAG 632 Query 687 TGTTATGCCCTTTGGATTCTGTTGAAAGTCATATGCGGGACACTATGGTCGCTGGTGCTC 746 |||||||||||||||||||||||||||||||||||| |||||| ||||| || ||||||| Sbjct 633 TGTTATGCCCTTTGGATTCTGTTGAAAGTCATATGCAGGACACAATGGTTGCCGGTGCTC 692 Query 747 ATCTTTGTGATGAAGAAACCGTAAGAGTTGTGTGTACTGAAGGGCCTGAAAGGATTCGTG 806 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 693 ATCTTTGTGATGAAGAAACCGTAAGAGTTGTGTGTACTGAAGGGCCTGAAAGGATTCGTG 752 Query 807 AACTGATTGCAATGGGAGCATCATTTGATCACGGCGAGGATGGAAATTTGCATTTGGCCA 866 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 753 AACTGATTGCGATGGGAGCATCTTTTGATCACGGCGAGGATGGAAATTTGCATTTGGCAA 812 Query 867 GAGAGGGTGGTCACTCGCATTGTAGGATCGTTCACGCTGCTGATATGACAGGAAGAGAGA 926 ||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 813 GAGAGGGTGGTCATTCGCATCGTAGGATCGTTCACGCAGCTGATATGACAGGAAGAGAGA 872 Query 927 TTGAGAGAGCTTTACTTGAAGCTGTACTTAATGATCCCAACATATCTGTCTTCAAACACC 986 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 873 TTGAGAGAGCTTTGCTTGAAGCTGTACTTAATGATCCCAACATATCTGTCTTCAAACACC 932 Query 987 ATTTTGCAATCGATCTGCTCACTTCTCAGGATGGCTTGAACACAGTTTGTCATGGTGTGG 1046 |||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||| | Sbjct 933 ATTTCGCAATCGATCTGCTCACTTCTCAGGTTGGTTTGAACACAGTTTGTCATGGTGTTG 992 Query 1047 ACACTTTGAATATCAAAACTAATGAGGTAGTACGCTTTATATCGAAGGTGACATTGCTTG 1106 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 993 ACACTTTGAATATCAAAACAAATGAGGTAGTACGCTTTATATCGAAGGTGACATTGCTTG 1052 Query 1107 CTTCAGGTGGAGCTGGGCATATCTATCCATCAACCACAAATCCTCTGGTGGCTACTGGAG 1166 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1053 CTTCAGGTGGAGCTGGGCATATCTATCCATCAACCACAAATCCTCTGGTCGCTACTGGAG 1112 Query 1167 ATGGGATGGCGATGGCTCATCGAGCTCAAGCTGTGATCTCAAATATGGAATTTGTGCAGT 1226 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1113 ATGGGATGGCTATGGCTCATCGAGCTCAAGCTGTGATCTCAAATATGGAATTTGTGCAGT 1172 Query 1227 TTCATCCTACTGCCCTAGCCGACGAAGGTCTTCCCATCAAACTACAAACTGCTAGGGAAA 1286 ||||||||||||||||||| |||||||||||||||||||||| |||||| ||||| |||| Sbjct 1173 TTCATCCTACTGCCCTAGCTGACGAAGGTCTTCCCATCAAACCACAAACCGCTAGAGAAA 1232 Query 1287 ACGCGTTCCTCATCACCGAGGCGGTGAGAGGTGATGGTGGCATCCTCTATAATCTAGGAA 1346 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 1233 ACGCGTTCCTCATCACCGAGGCCGTGAGAGGTGATGGTGGCATCCTCTACAATCTAGGAA 1292 Query 1347 TGGAGCGATTCATGCCTGTTTACGATGAACGAGCTGAGCTTGCTCCAAGAGACGTGGTTG 1406 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1293 TGGAGCGATTCATGCCCGTTTACGATGAACGAGCTGAGCTTGCTCCTAGAGACGTGGTTG 1352 Query 1407 CAAGAAGTATTGATGACCAGCTTAAGAAACGAAACGAAAAGTATGTGTTACTTGACATAA 1466 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1353 CAAGAAGCATTGATGACCAGCTTAAGAAACGGAACGAAAAGTATGTGTTACTTGACATAA 1412 Query 1467 GCCATAAGCCAAGAGAAAAGATTCTTGCCCATTTCCCGAACATAGCTTCTGAATGTCTTA 1526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1413 GCCATAAGCCAAGAGAAAAGATTCTTGCCCATTTCCCGAACATAGCTTCTGAATGTCTTA 1472 Query 1527 AACACGGTCTGGATATCACCCGTCAGCCTATTCCGGTTGTCCCTGCAGCCCATTACATGT 1586 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1473 AACACGGTCTGGATATCACCCGTCAGCCTATTCCGGTTGTCCCTGCAGCCCATTACATGT 1532 Query 1587 GTGGAGGAGTTCGTGCTGGTTTACAAGGCGAAACCAATGTCCTTGGATTGTTTGTAGCAG 1646 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1533 GTGGAGGAGTTCGTGCTGGTTTACAAGGCGAAACCAATGTCCTTGGATTGTTTGTAGCAG 1592 Query 1647 GTGAAGTAGCATGTACAGGCCTCCACGGGGCAAATCGTCTTGCTAGTAACTCGCTTTTAG 1706 |||| ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1593 GTGAGGTAGCGTGTACCGGCCTCCACGGGGCAAATCGTCTTGCTAGTAACTCACTTTTAG 1652 Query 1707 AAGCTCTGGTTTTCGCGAGACGGGCTGTTCAGCCTTCGACTGAGCTCATGAAACGCACAA 1766 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1653 AAGCTCTGGTTTTCGCAAGACGGGCTGTTCAGCCTTCGACTGAGCTCATGAAACGCACAA 1712 Query 1767 GACTTGATGT-ATGCGCATCAGAGAAATGGACAAGGCCTGTTGTTGCGACAGCTAGATTG 1825 |||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1713 GACTTGATGTCA-GCGCATCAGAGAAATGGACAAGGCCTGTTGTTGCAACAGCTAGATTG 1771 Query 1826 CTAGGAGATGAAGTAATAGCAAAGATTATAGCTTTGACTAAAGAAGTGAGAAGAGAGCTT 1885 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1772 TTAGGAGATGAAGTAATATCAAAGATTATAGCTTTGACTAAAGAAGTGAGAAGAGAGCTT 1831 Query 1886 CAGGAGGTAATGTGGAAGTATGTTGGTATTGTCAGATCGACAATTCGGCTCACCACTGCT 1945 ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1832 CAGGAAGTGATGTGGAAGTATGTTGGTATTGTCAGATCGACCATTCGGCTCACCACTGCC 1891 Query 1946 GAGAGGAAAATCGCAGAGCTAGAAGCAAAATGGGAAACATTTTTGTTTGAACATGGATGG 2005 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1892 GAGAGGAAAATCGCAGAGCTAGAAGCAAAATGGGAAACATTTTTGTTTGAACATGGATGG 1951 Query 2006 GAACAAACAGTGGTAGCTCTTGAAGCTTGTGAGATGAGAAACTTGTTCTGTTGCGCTAAG 2065 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1952 GAACAAACAGTGGTAGCTCTTGAAGCTTGTGAGATGAGAAACTTGTTCTGTTGCGCTAAG 2011 Query 2066 CTTGTGGTGAGCAGCGCGTTAGCTAGACATGAAAGCAGAGGTCTTCATTACATGACAGAC 2125 |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct 2012 CTTGTGGTGAGCAGCGCGTTAGCTAGACATGAAAGCCGAGGTCTTCATTATATGACAGAC 2071 Query 2126 TTTCCTTTTGTGGAAGAAAGCAAGCGGATTCCGACGATTATTCTACCGTCTTCTCCTACA 2185 ||||||||||| |||||||||||||||||||| || |||||||| || |||||||||||| Sbjct 2072 TTTCCTTTTGTTGAAGAAAGCAAGCGGATTCCTACAATTATTCTCCCCTCTTCTCCTACA 2131 Query 2186 ACAGCTAGTTGGAGCTCAAGGCGGTTACAGAATATAAGTAGCAGCTCACTTATTGATTGC 2245 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 2132 ACAGCTAGTTGGAGCTCAAGGCGGTTACAGAATATAAGCAGCAGCTCACTTATTGATTGT 2191 Query 2246 TAAAACTGCAGGAGTTTTTGTTCTTATTTGAATCCAAACCTCTCTGATTATTGTATCAAT 2305 |||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||| Sbjct 2192 TAAAACTGCAGGAGTTTT-GTTCTTATTTGAATCCAATCCTCTCTTATTATTGTATCAAT 2250 Query 2306 TTGAAAAAATTTGGATCTCAAAAGGAATCTCTGATTCTGACACTCTGTAATACAAAAGGA 2365 |||||||| |||||| |||||||| ||||||||||||||||| ||||||||||||||| | Sbjct 2251 TTGAAAAATTTTGGAACTCAAAAGAAATCTCTGATTCTGACAATCTGTAATACAAAAGAA 2310 Query 2366 AATAAATTATTCATTTGAGATATC 2389 |||||||||||||||||||||||| Sbjct 2311 AATAAATTATTCATTTGAGATATC 2334 Score = 152 bits (82), Expect = 1e-35 Identities = 288/376 (77%), Gaps = 59/376 (16%) Strand=Plus/Plus Query 5 ACACCACTTGGGGGAGGCTC---C-CATACACAAAACGAAGGCGCGAATTTCAAGGACTC 60 |||||||||||||| ||||| | || |||||||| ||||||||||||||||||||| | Sbjct 1 ACACCACTTGGGGGCGGCTCATACACAAACACAAAAGGAAGGCGCGAATTTCAAGGACGC 60 Query 61 TTCTCGACGACCAAACCACATAAAACACTCTTACCAGAATTTGTGTTGtcttcgttcatt 120 |||||||||||||||||| | |||| | | | || | || || | || | Sbjct 61 TTCTCGACGACCAAACCAGA-AAAA-A----T---A-AA-CACTCTT-TC--C--TC--T 102 Query 121 tccttctcctcttcttcttcttcttcGTCGTAATTTTGATTGTTTCTTTGCGAAAAGTCG 180 | ||| || | ||| | || | || |||||||||||||| |||||||||||||| || Sbjct 103 T-CTT-TCGTTTTC-TGTT-GTATT--TCGTAATTTTGATTCTTTCTTTGCGAAAAATC- 155 Query 181 tt-tt-tt-tAATCAAGTCTGAATCACGTTTTATTGATC--T--ACACTCGCGTGGGTTC 233 || || || | || |||||||||||||||| |||||||| | |||||||||| ||| Sbjct 156 TTCTTCTTCT-AT-AAGTCTGAATCACGTTCTATTGATCTATCGACACTCGCGT---TTC 210 Query 234 TCCGTTTCGTGCTTAGATCAGAGAGCTCCCTCCCGTGATTCCGAGCTTT-AAGG-TC-GG 290 | ||||||||||||||||||||| ||| |||| | || || ||| ||| | Sbjct 211 T-CGTTTCGTGCTTAGATCAGAGCGCTTCCTCTCATG-TT---TTTTTTGTAGGAGCTAT 265 Query 291 A-AATGGCGGCTCATGTTTCTACTGGAAACATTCATAATTTCTATCTTGCGGGGCAGGTT 349 | ||||||||||||||||||| |||| | |||||||||||||||||||||||| Sbjct 266 ATAATGGCGGCTCATGTTTCTGCTGG--------A-AATTTCTATCTTGCGGGGCAGGTT 316 Query 350 TACAGGGGACAAGCTT 365 |||||||||||||||| Sbjct 317 TACAGGGGACAAGCTT 332 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90007248935 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5