BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14780.1
Length=1559
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488325 jgi|Araly1|488325|fgenesh2_kg.6__1459__AT5G14780.1 2337 0.0
> Ahg488325 jgi|Araly1|488325|fgenesh2_kg.6__1459__AT5G14780.1
Length=1556
Score = 2337 bits (1265), Expect = 0.0
Identities = 1449/1536 (94%), Gaps = 19/1536 (1%)
Strand=Plus/Plus
Query 1 ATTTCGTCCTATATAAATCCTCTCATCTCCAATTACTG-ATTTCACACAAAACAAAAATC 59
|||||||||||||||||||||||| |||||||||| || ||||||||||||| | |||||
Sbjct 1 ATTTCGTCCTATATAAATCCTCTCTTCTCCAATTAGTGAATTTCACACAAAA-ACAAATC 59
Query 60 GACCAAAGAGTAACCAAATTGATATTTATCTCTTCTCAACCATGGCGATGAGACAAGCCG 119
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GACC-AA-AGTAACCAAATTGATATTTATCTCTTCTCAACCATGGCGATGAGACAAGCCA 117
Query 120 CTAAGGCAACGATCAGGGCCTGTTCTTCCTCTTCTTCTTCGGGTTACTTCGCTCGACGTC 179
||||||| ||||||| || |||||||||||||||||| |||||||||||||||||||||
Sbjct 118 CTAAGGCTGCGATCAGAGCATGTTCTTCCTCTTCTTCTACGGGTTACTTCGCTCGACGTC 177
Query 180 AGTTTAATGCATCTTCTGGTGATAGCAAAAAGATTGTAGGAGTTTTCTACAAGGCCAACG 239
| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 178 AATTTAATGCATCTTCTGCTGATAGCAAAAAGATTGTTGGAGTTTTCTACAAGGCCAACG 237
Query 240 AATACGCTACCAAGAACCCTAACTTCCTTGGCTGCGTCGAGAATGCCTTAGGAATCCGTG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AATACGCTACCAAGAACCCTAACTTCCTTGGCTGCGTCGAGAATGCCTTAGGAATCCGTG 297
Query 300 ACTGGCTTGAATCCCAAGGACATCAGTACATCGTCACTGATGACAAGGAAGGCCCTGATT 359
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 298 ACTGGCTTGAATCACAAGGACATCAGTACATCGTCACTGATGACAAAGAAGGCCCTGACT 357
Query 360 GCGAACTTGAGAAACATATCCCGGATCTTCACGTCCTAATCTCCACTCCCTTCCACCCGG 419
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 358 GCGAACTTGAGAAACATATCCCGGATCTTCACGTCCTAATCTCCACTCCTTTCCACCCGG 417
Query 420 CGTATGTAACTGCTGAAAGAATCAAGAAAGCCAAAAACTTGAAGCTTCTCCTCACAGCTG 479
| ||||| |||||||||||||||||||||||||| ||| |||||||||||||||| ||||
Sbjct 418 CATATGTGACTGCTGAAAGAATCAAGAAAGCCAAGAACCTGAAGCTTCTCCTCACGGCTG 477
Query 480 GTATTGGCTCGGATCATATTGATCTCCAGGCAGCTGCAGCTGCTGGCCTGACGGTTGCTG 539
||||||| || ||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 478 GTATTGGTTCAGATCACATTGATCTCCAGGCAGCTGCAGCTGCTGGCTTGACGGTTGCTG 537
Query 540 AAGTCACGGGAAGCAACGTGGTCTCAGTGGCAGAAGATGAGCTCATGAGAATCTTAATCC 599
|||||||||||||||||||||| ||||| || ||||||||||||||||||||| ||||||
Sbjct 538 AAGTCACGGGAAGCAACGTGGTTTCAGTAGCGGAAGATGAGCTCATGAGAATCCTAATCC 597
Query 600 TCATGCGCAACTTCGTACCAGGGTACAACCAGGTCGTCAAAGGCGAGTGGAACGTCGCGG 659
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 598 TCATGCGCAACTTCGTACCAGGGTACAACCAGGTTGTCAAAGGCGAGTGGAACGTCGCGG 657
Query 660 GCATTGCGTACAGAGCTTATGATCTTGAAGGGAAGACGATAGGAACCGTGGGAGCTGGAA 719
||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 658 GCATTGCATACAGAGCTTATGATCTTGAAGGGAAGACGATCGGAACTGTGGGAGCTGGAA 717
Query 720 GAATCGGAAAGCTTTTGCTGCAGCGGTTGAAACCATTCGGGTGTAACTTGTTGTACCATG 779
||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 718 GAATCGGAAAGCTTTTGCTGCAGCGGTTGAAACCATTCGGGTGCAATTTATTGTACCATG 777
Query 780 ACAGGCTTCAGATGGCACCAGAGCTGGAGAAAGAGACTGGAGCTAAGTTCGTTGAGGATC 839
|||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||
Sbjct 778 ACAGGCTTCAGATGGCACCAGAGCTGGAGAAAGAGATTGGTGCTAAGTTTGTTGAGGATC 837
Query 840 TGAATGAAATGCTCCCTAAATGTGACGTTATAGTCATCAACATGCCTCTCACGGAGAAGA 899
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 838 TGAATGAAATGCTCCCTAAATGTGACGTTGTAGTCATCAACATGCCTCTCACGGAGAAGA 897
Query 900 CAAGAGGAATGTTCAACAAAGAGTTGATAGGGAAATTGAAGAAAGGCGTTTTGATAGTGA 959
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 898 CAAGAGGAATGTTCAACAAAGAGTTGATAGGAAAATTGAAGAAAGGTGTTTTGATAGTGA 957
Query 960 ACAACGCAAGAGGAGCCATCATGGAGAGGCAAGCAGTGGTGGATGCGGTGGAGAGTGGAC 1019
||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 958 ACAACGCAAGAGGTGCCATCATGGATAGGCAAGCGGTGGTGGAGGCGGTGGAGAGTGGAC 1017
Query 1020 ACATTGGAGGGTACAGCGGAGACGTTTGGGACCCACAGCCAGCTCCTAAGGACCATCCAT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 ACATTGGAGGGTACAGCGGAGACGTTTGGGACCCACAGCCAGCTCCTAAGGACCATCCAT 1077
Query 1080 GGCGTTACATGCCTAACCAGGCTATGACCCCTCATACCTCCGGCACCACCATTGACGCTC 1139
||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 1078 GGCGTTACATGCCTAACCAAGCCATGACCCCGCATACCTCCGGCACCACCATTGACGCTC 1137
Query 1140 AGCTACGGTATGCGGCGGGGACGAAAGACATGTTGGAGAGATACTTCAAGGGAGAAGACT 1199
||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1138 AGCTACGATATGCGGCGGGGACGAAAGACATGTTGGAGAGGTACTTTAAGGGAGAAGACT 1197
Query 1200 TCCCTACTGAGAATTACATCGTCAAGGACGGTGAACTTGCTCCTCAGTACCGGTAAGCTT 1259
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TCCCTGCTCAGAATTACATCGTCAAGGACGGTGAACTTGCTCCTCAGTACCGGTAAGCTT 1257
Query 1260 TTGAGGAGGTGACATTGGGAAGATGATGAGAAACGACCCCAACGTTCAAGAAAACAAATA 1319
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1258 TTGAGGAGGTGAGATTGGGAAGATGATGAGAAACGACCTCAACGTTCAAGAAAACAAATA 1317
Query 1320 AAGAAGTATTTGGACTTTGCTAAGTCGAATGACTTGAGTCATCTTTTGGTTTAGTTTTTG 1379
|| |||||||| |||||||||||||||||| ||||| |||||||||| ||||||||||||
Sbjct 1318 AAAAAGTATTTCGACTTTGCTAAGTCGAATAACTTG-GTCATCTTTTCGTTTAGTTTTTG 1376
Query 1380 TTATTAT-ATAAGCACAATAA-TAATAGGAGGGCACTT-C--CCC-TGTTCTGAGAGTTT 1433
||||| | ||||||| ||||| || ||||||||||||| | ||| ||||| ||||||||
Sbjct 1377 TTATT-TCATAAGCAGAATAAATA-TAGGAGGGCACTTACTTCCCCTGTTCCGAGAGTTT 1434
Query 1434 GTGAACATATTACTC-AGTGGTTTAAATCACA--CA-T--ATGTATTTGTTTCCCCAATC 1487
|||||| |||| || ||| |||||||||||| || | |||||||||||||||||||
Sbjct 1435 GTGAACGTATTCCTTTAGTAGTTTAAATCACATACAGTTTATGTATTTGTTTCCCCAATT 1494
Query 1488 GTAGGAACTCAATGGTTTCAAATCTCATTATATAAA 1523
||||||||||||||||| ||||||||||||||||||
Sbjct 1495 GTAGGAACTCAATGGTTCCAAATCTCATTATATAAA 1530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58392345585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5