BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G14800.1 Length=1282 Score E Sequences producing significant alignments: (Bits) Value Ahg893387 jgi|Araly1|893387|Al_scaffold_0006_1383 1363 0.0 > Ahg893387 jgi|Araly1|893387|Al_scaffold_0006_1383 Length=831 Score = 1363 bits (738), Expect = 0.0 Identities = 801/832 (96%), Gaps = 2/832 (0%) Strand=Plus/Plus Query 222 ATGGAGATTCTTCCGATTCCGGCGGAGAGTTTCAAGGTAGGATTCATCGGAGCTGGTAAA 281 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 ATGGAGATTCTTCCGATTCCGGCGGAGAGCTTCAAGGTAGGATTCATCGGAGCTGGTAAA 60 Query 282 ATGGCGGAGAGTATAGCTAGAGGTGTGGTTGCTTCCGGTGTGCTTCCTCCTAATCGTATA 341 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 61 ATGGCGGAGAGTATAGCTAGAGGTGTGGTTGCTTCCGGTGTGCTTCCTCCAAATCGTATC 120 Query 342 TGCACCGCCGTTCACTCAAATCTCAATCGCCGTGATGTCTTCGAATCCTTTGGCGTCAAT 401 | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 121 TCCACCGCCGTTCACTCAAATCTCAATCGCCGTGATGTTTTCGAATCCTTTGGCGTCAAT 180 Query 402 GTCTTCTCCACTAGCGAAGAAGTTGTTAAAGAAAGCGATGTTGTCATATTCTCTGTGAAA 461 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 181 GTCTTCTCCACTAGCGAAGAGGTTGTTAAAGAAAGCGATGTTGTCATATTCTCTGTCAAA 240 Query 462 CCTCAAGTTGTTAAGAAGGCTGTCACAGAATTAAAGTCGAAGCTTTCAAAGAATAAGATT 521 || ||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| Sbjct 241 CCCCAAGTTGTTAAGAAGGCTGTCACGGAATTAAGGTCGAAGCTTTCAAAGAGTAAGATT 300 Query 522 CTGGTTTCTGTTGCAGCTGGAATCAAGTTGAATGAT-TTACAGGAATGGTCTGGTCAAGA 580 |||||||| ||||||||||||||||||||||| ||| || |||||||||||||||||||| Sbjct 301 CTGGTTTCGGTTGCAGCTGGAATCAAGTTGAAAGATCTT-CAGGAATGGTCTGGTCAAGA 359 Query 581 TCGATTCATAAGGGTGATGCCTAATACACCTGCCGCTGTTGGTGAGGCAGCTTCAGTTAT 640 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 360 TCGATTCATAAGGGTGATGCCTAATACACCTGCCGCAGTTGGTGAGGCAGCTTCAGTTAT 419 Query 641 GAGCCTTGGCACAGGAGCAACGGAAGAGGATGGAGCAATTGTTGCTATGTTGTTTGGCGC 700 |||||||||||||||||| ||||||||||||||||| |||||||||| ||| |||||||| Sbjct 420 GAGCCTTGGCACAGGAGCTACGGAAGAGGATGGAGCTATTGTTGCTAAGTTATTTGGCGC 479 Query 701 GGTGGGGAAGATATTGAAAGCTGATGAGAAAATGTTTGATGCTGTCACTGGTCTCAGTGG 760 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 480 GGTGGGGAAGATATTGAAAGCTGATGAGAAAATGTTTGATGCTGTCACTGGTCTCAGCGG 539 Query 761 AAGTGGACCAGCATACATATTTTTAGCAATTGAAGCTTTAGCCGATGGAGGAGTAGCTGC 820 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 540 AAGTGGACCAGCATACATATTCTTAGCAATTGAAGCTTTAGCTGATGGAGGAGTAGCTGC 599 Query 821 TGGTTTACCCCGAGAGCTTGCATTGAGTTTAGCTTCACAGACCGTTCTTGGAGCTGCAAC 880 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 600 TGGTTTACCCCGAGAGCTCGCATTGAGTTTAGCTTCACAAACCGTTCTTGGAGCTGCAAC 659 Query 881 GATGGTTAGCAAAACTGGGAAGCATCCAGGTGTGTTGAAAGATGATGTTACCTCACCTGG 940 ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 660 AATGGTTAGCAAAACTGGGAAGCATCCAGGTGTGTTGAAAGATGATGTCACTTCACCTGG 719 Query 941 CGGCACTACAATAGCCGGAGTTCATGAACTAGAGAAAGGCTCTTTCCGGGCAACACTTAT 1000 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TGGCACTACAATAGCTGGAGTTCATGAACTAGAGAAAGGCTCTTTCCGGGCAACACTTAT 779 Query 1001 GAATGCAGTTGTTGCTGCAGCTAAACGAAGCCGCGAGCTCTCACAGAGCTAA 1052 ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 GAACGCAGTTGTTGCTGCAGCTAAACGAAGCCGCGAGCTCTCACAGAGCTAA 831 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47920506669 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5