BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14880.1
Length=2346
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325951 jgi|Araly1|325951|fgenesh1_pm.C_scaffold_6001171 3901 0.0
> Ahg325951 jgi|Araly1|325951|fgenesh1_pm.C_scaffold_6001171
Length=2346
Score = 3901 bits (2112), Expect = 0.0
Identities = 2268/2346 (97%), Gaps = 0/2346 (0%)
Strand=Plus/Plus
Query 1 ATGGATCTCGAGCGTCTAAGCCCAAGAAATCCAGTTAAGAAAGAATCTTGGTGGACGGTT 60
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1 ATGGATCTCGAGCGTCTAAGCCCAAGAAATCCAATCAAGAAAGAATCTTGGTGGACGGTT 60
Query 61 CTGACATTAGCTTACCAAAGCTTAGGTGTAGTCTACGGAGATTTAGCAACTTCACCATTG 120
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTGACTTTAGCTTACCAGAGCTTAGGTGTAGTCTACGGAGATTTAGCAACTTCACCATTG 120
Query 121 TATGTCTACAAGAGCACTTTTGCTGAAGACATAACACATTCTGAGACAAACGAAGAGATC 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 TATGTCTACAAGAGCACTTTTGCTGAAGACATAACACATTCAGAGACAAACGAAGAGATC 180
Query 181 TTTGGTGTTCTGTCTCTTATCTTCTGGACATTAACTTTAATCCCACTTGTTAAATACGTT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTGGTGTTCTGTCTCTTATCTTCTGGACATTAACTTTAATCCCACTTGTTAAATACGTC 240
Query 241 TTTATTGTTCTTCGTGCTGATGATAATGGTGAAGGTGGGACTTTTGCTCTCTACTCTTTA 300
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 241 TTTATTGTTCTTCGTGCTGATGATAATGGAGAAGGTGGGACTTTCGCTCTCTACTCTTTG 300
Query 301 TTATGTCGCCATGCTAGAATCAGCTCTTTGCCCAATTTCCAGCTCGCTGATGAGGACCTT 360
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGTGTCGCCATGCTAGAATTAGCTCTTTGCCCAATTTCCAGCTCGCTGATGAGGACCTT 360
Query 361 TCTGAGTATAAGAAAAATTCCGGGGAGAATCCGATGAGATTAAAAGTTCCGGGGTGGAGT 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCTGAGTATAAGAAAACTTCCGGGGAGAATCCGATGAGATTAAAAGTTCCGGGGTGGAGT 420
Query 421 TTGAAAAACACTCTGGAGAAGCATAAGTTTCTGCAGAATATGTTACTTGTTCTTGCTCTG 480
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 421 TTGAAAAACACTCTGGAGAAGCATAAGTTTCTGCAGAACATGTTGCTTGTTCTTGCTCTG 480
Query 481 ATTGGGACTTGTATGGTTATTGGTGATGGTGTTCTCACACCTGCAATCTCTGTTTTCTCA 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 481 ATTGGGACTTGTATGGTTATTGGTGATGGTGTTCTTACACCTGCAATCTCTGTGTTCTCC 540
Query 541 GCAGTCTCTGGATTAGAATTATCCATGTCTAAGCAGCAACATCAATATGTGGAGGTGCCT 600
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCAGTCTCTGGATTAGAGTTATCCATGTCTAAGCAGCAACATCAATATGTGGAGGTGCCT 600
Query 601 GTGGTCTGTGCCATACTGATACTCTTGTTCTCGCTACAACACTATGGAACACATCGTTTA 660
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTGGTCTGTGCAATACTGATACTCTTGTTCTCGCTACAACACTATGGAACACATCGTTTA 660
Query 661 GGTTTTGTTTTTGCTCCCATTGTGCTTGCATGGCTTCTCTGTATAAGCACCATTGGTGTA 720
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 GGTTTTGTTTTTGCTCCCATTGTGCTTGCATGGCTTCTCTGCATAAGCACCATTGGTGTA 720
Query 721 TACAACATCTTCCATTGGAATCCTCATGTTTACAAAGCATTGTCTCCTTATTACATCTAC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TACAACATCTTCCATTGGAATCCTCATGTTTACAAAGCATTGTCTCCTTATTACATCTAC 780
Query 781 AAGTTCCTCAAGAAAACTCGTAAACGCGGATGGATGTCCCTCGGTGGCATCCTTTTATGC 840
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 AAGTTCCTCAAGAAAACTCGTAAACGCGGATGGATGTCTCTCGGTGGCATCCTTTTATGC 840
Query 841 ATTACAGGCTCGGAAGCTATGTTTGCTGATCTAGGACACTTCACTCAGTTGTCAATACAG 900
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 841 ATTACAGGCTCGGAAGCTATGTTTGCTGATCTAGGCCACTTCACTCAGTTGTCAATACAG 900
Query 901 ATTGCATTCACATTCGCTGTTTACCCGTCGTTAATCCTCGCATACATGGGTCAAGCCGCG 960
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 901 ATTGCATTCACATTCGCTGTTTACCCGTCGCTAATCCTTGCATACATGGGTCAAGCCGCG 960
Query 961 TATCTATCTAAGCACCATGTCCTCCAGAGTGACTACCGGATTGGATTCTATGTTTCTGTA 1020
|||||||||||||||||||||||| ||||||| |||||||||||||| |||||||| |||
Sbjct 961 TATCTATCTAAGCACCATGTCCTCGAGAGTGATTACCGGATTGGATTTTATGTTTCCGTA 1020
Query 1021 CCAGAGCAAATAAGATGGCCAGTTTTAGCAATTGCTATATTGGCAGCTGTTGTTGGAAGT 1080
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1021 CCCGAGCAAATAAGATGGCCAGTTTTGGCAATTGCTATATTGGCGGCTGTTGTTGGAAGT 1080
Query 1081 CAGGCAATAATCACAGGAACATTCTCGATCATCAAGCAATGTACTTCTCTAGGTTGCTTC 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CAGGCAATAATCACAGGAACATTCTCGATCATCAAGCAATGTACTTCTCTAGGTTGCTTC 1140
Query 1141 CCAAAAGTCAAAATCGTACACACTTCGTCGAGAATGCATGGTCAGATATATATCCCTGAG 1200
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1141 CCAAAAGTCAAAATCGTACACACTTCGTCGAGAATGCACGGTCAGATATATATCCCTGAG 1200
Query 1201 ATCAACTGGACTCTCATGCTCTTGTGCTTAGCCGTCACCGTTGGATTCCGCGACACCAAA 1260
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1201 ATCAATTGGACTCTCATGCTCTTGTGCTTAGCCGTCACCGTTGGATTCCGTGACACCAAA 1260
Query 1261 CACATAAGCAATGCATCAGGTTTGGCGGTTATTACCGTTATGCTAGTAACGACTTGCTTG 1320
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1261 CACATAAGCAATGCCTCAGGTTTGGCGGTTATTACCGTTATGCTGGTAACGACTTGCTTG 1320
Query 1321 ATGTCTTTGGTAATAGTCTTATGCTGGCGCAAAAGCTCCCTCTACGCACTAGCCTTCATT 1380
|||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1321 ATGTCTCTGGTAATAGTCTTATGCTGGCACAAAAGCTCCCTCTACGCGCTAGCCTTCATT 1380
Query 1381 TTCTTCTTCGGAACAATTGAAGTTCTGTATTTCTCAGCTTCACTCATCAAATTCCTCGAA 1440
||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1381 TTCTTTTTCGGAACAATTGAAGTTCTCTACTTCTCAGCTTCACTCATCAAATTCCTCGAA 1440
Query 1441 GGGGCTTGGGTTCCAGTCGCACTCTCCTTCATCTTCCTCCTCATCATGTACGTTTGGCAC 1500
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GGTGCTTGGGTTCCAGTCGCCCTCTCCTTCATCTTCCTCCTCATCATGTACGTTTGGCAC 1500
Query 1501 TACGGAACCCTTAAGCGTTACGAATTTGACGTTCAAAACAAAGTCTCAATCAACTGGCTC 1560
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1501 TACGGGACCCTTAAGCGTTACGAATTTGACGTCCAAAACAAAGTCTCAATCAACTGGCTC 1560
Query 1561 CTCACACTTTTCGGCTCTTCAAACCTCGGAATTGTCCGAGTCCATGGAATCGGCGTGATC 1620
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1561 CTCACACTCTTCGGCTCTTCAAACCTCGGAATTGTCCGAGTCCAGGGAATCGGCGTGATC 1620
Query 1621 AACACCGAACTTGTCTCGGGCATACCAGCTATCTTCTCTCATTTCATCACTAACCTCCCG 1680
||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 AACACTGAGCTTGTCTCTGGCATACCAGCTATCTTCTCTCATTTCATCACTAACCTCCCG 1680
Query 1681 GCGTTTCACCAAGTCGTTGTCTTCCTCTGCGTGAAATCTGTCCCCGTCCCGCATGTGAAA 1740
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 GCGTTTCACCAAGTCGTCGTCTTCCTCTGCGTGAAATCTGTCCCCGTCCCGCATGTGAAA 1740
Query 1741 CCGGAGGAACGGTTTCTAGTGGGAAGGGTTGGACCGAAGGAGTACCGGCTCTACCGGTGT 1800
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 1741 CCGGAGGAACGGTTTCTCGTTGGAAGGGTCGGACCGAAGGAGTACCGGCTCTACCGGTGT 1800
Query 1801 ATAGCCCGGTATGGATACCGCGATGTACACAAAGACGATGTCGAGTTTGAGAATGACCTC 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1801 ATAGCCCGGTATGGATACCGCGATGTACACAAAGACGATGTCGAGTTTGAGAACGACCTC 1860
Query 1861 ATTTGCAGTATCGCGGAGTTTATCCGTTCAGATAAACCATTGAATTACTCCCCGGACCCG 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 ATTTGCAGTATCGCGGAGTTTATCCGTTCAGATAAACCATTGAATTACTCCCCGGACCCG 1920
Query 1921 GAAAATGAATCTGGAATAAATGAGAGGCTAACTGTCGTCGCGGCTTCCTCTTCCAATCTT 1980
||||| |||||||||| || ||||||||||||||||||||||||||| || |||||||||
Sbjct 1921 GAAAACGAATCTGGAACAAGTGAGAGGCTAACTGTCGTCGCGGCTTCTTCATCCAATCTT 1980
Query 1981 GAAGGCGTACAAATCTATGAAGACGATGGTTCTGACAAACAAGAACCATCTTCTTCTTCG 2040
|||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||
Sbjct 1981 GAAGGCGTACAAATCTTTGAAGACGATGGTTCTGACAAACAAGAACCGTCATCTTCTTCG 2040
Query 2041 GAGGTAATCATGGTGGCTCCTTCTCCGAGATTCAAGAAAAGGGTACGGTTTGTGTTACCA 2100
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2041 GAGGTAATCGTGGTGGCTCCTTCTCCGAGAATCAAGAAAAGGGTACGGTTTGTGTTACCA 2100
Query 2101 GAAAGTGCGAGGATCGATAGATCGGCGGAGGAGGAGCTAACAGAGCTCACTGAGGCTCGT 2160
|||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 2101 GAAAGTGCGAGGATAGATAGATCCGCGGAGGAGGAGCTAACAGAGCTCACAGAGGCGCGT 2160
Query 2161 GAGGCAGGAATGGCGTTTATAATGGGACATTCATATGTGAGAGCAAAATCGGGATCGAGT 2220
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 2161 GAGGCAGGAATGGCGTTTATAATGGGACATTCGTATGTGAGAGCAAAATCTGGATCAAGT 2220
Query 2221 GTGATGAAGAAGATCGCTATTAACTTTGGCTACGATTTTCTTAGAAGAAACTCAAGGGGT 2280
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||
Sbjct 2221 GTGATGAAGAAGATCGCTATAAACTTTGGCTACGATTTTCTAAGAAGAAACTCGAGAGGA 2280
Query 2281 CCTTGTTATGGTCTCTCTACTCCTCACGCTTCTACTTTAGAAGTTGGTATGGTTTATATC 2340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2281 CCTTGTTATGGTCTCTCTACTCCTCACGCTTCTACTTTAGAAGTTGGTATGGTTTATATC 2340
Query 2341 GTTTGA 2346
||||||
Sbjct 2341 GTTTGA 2346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88369368400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5