BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G14910.1 Length=815 Score E Sequences producing significant alignments: (Bits) Value Ahg488333 jgi|Araly1|488333|fgenesh2_kg.6__1467__AT5G14910.1 1035 0.0 > Ahg488333 jgi|Araly1|488333|fgenesh2_kg.6__1467__AT5G14910.1 Length=732 Score = 1035 bits (560), Expect = 0.0 Identities = 645/686 (94%), Gaps = 5/686 (1%) Strand=Plus/Plus Query 59 CACAACCTTATCGAGTGAAAGAAGATTGGGTCAGTAGTGAAAAATGGCGTCGATTGCAGC 118 ||||||||||||||||| ||||||||| ||| ||||| |||||||||||||||| ||||| Sbjct 1 CACAACCTTATCGAGTG-AAGAAGATTTGGTTAGTAGCGAAAAATGGCGTCGATCGCAGC 59 Query 119 TTCTTCTACCTTTCACTCGTTTTGCAGAACCAAAAGCCCTAATCTTTCTTCGACCCACCT 178 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 60 TTCTTCTACCTTTCACTCGTTTTGCAGAACCAAAAGCCCTAATCTTTCTTCGACCCATCT 119 Query 179 TCTTCCTTTGTCGAAAAACCTCAACTTTCGGACCAGAGCTATCGGAAATAGCCGCAA-TT 237 ||| |||||||| ||||| ||||||||| |||||||||||||||||||||||| || || Sbjct 120 TCTCCCTTTGTCTAAAAATCTCAACTTTAAGACCAGAGCTATCGGAAATAGCCG-AATTT 178 Query 238 GCAGTTTTGCTGGGTTTATAAAACAAAATCGCCTTGGATTGAGGAAGCTTTCGTCTATTG 297 ||||||||||||||||||| ||||| ||||||||||| || | |||||||||||| ||| Sbjct 179 GCAGTTTTGCTGGGTTTATGAAACAGAATCGCCTTGGGTTAATGAAGCTTTCGTCGGTTG 238 Query 298 GAGAAGGAGGAGAAGGTGTCGCTGTCGCAGAGGAGCAACCGCAAGAGACTGTCTCTGTTC 357 ||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||| Sbjct 239 GAGAAGGAGGAGAAGATGTCGCAGTCGCAGAGGAGCAACAGCAAGAGACTGTCTCTGTTC 298 Query 358 CTGTCTCTCCTTCAGACATGCTCACCATGTTTTTCCAGGCTGATGGAACTTTGAACGAAG 417 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 299 CTGTCTCTCCTTCAGACATGCTCACCATGTTTTTTCAGGCTGATGGAACTTTGAACGAAG 358 Query 418 CAGCTATTCCTAATGTGACAAGGGCCTTACAGGATATTGATGGAGTTTCCAATTTAAAGG 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 CAGCTATTCCTAATGTGACAAGGGCCTTACAGGATATTGATGGAGTTTCCAATTTAAAGG 418 Query 478 TTCAGGTTTCTGAAGGTGTTGCCGTCGTTGAGCTTTTGAAGCAAACAACGGTTCAAGCAA 537 |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 419 TTCAGGTTTCTGAAGGTGTTGCCGTCGTTGAGCTTTCAAAGCAAACGACGGTTCAAGCAA 478 Query 538 CAGGAGTGGCGTCAAACTTGGTGGAGACTATACAAGGAGCTGGATTTAAGTTACAGACTT 597 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 479 CAGGAGTGGCGTCAAGCTTGGTGGAGACTATACAAGGAGCTGGATTTAAATTACAGACTT 538 Query 598 TGAATCTGAGTTTTGAAGATGACGATGAGGTTCTTGTCTAGTGAAATCATCCTTT-TCCT 656 ||||| |||| ||||||||||| ||||| |||||| |||||| |||||||| ||| |||| Sbjct 539 TGAATTTGAGCTTTGAAGATGAAGATGAAGTTCTTATCTAGTTAAATCATC-TTTCTCCT 597 Query 657 CCATTTTGTGATTAAAGAAACTCATAATGTTCAATTCTAGGGATAATTTCTTTCATTTGT 716 ||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| Sbjct 598 CCATTTTGTGATTAAAGAAACACATAATGTTCAATTTTAGGGATACTTTCTTTCATTTGT 657 Query 717 TCCTCTAAAGAAAACAAATGTGGTAA 742 |||||| ||||||||||||||||||| Sbjct 658 TCCTCTCAAGAAAACAAATGTGGTAA 683 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30117104430 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5