BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14920.1
Length=1166
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488334 jgi|Araly1|488334|fgenesh2_kg.6__1468__AT5G14920.1 1338 0.0
> Ahg488334 jgi|Araly1|488334|fgenesh2_kg.6__1468__AT5G14920.1
Length=1063
Score = 1338 bits (724), Expect = 0.0
Identities = 977/1089 (90%), Gaps = 58/1089 (5%)
Strand=Plus/Plus
Query 16 TATTTATGGATAATATGGTTAATAAATAAGGAACTTCTATTTATATCACAAAAGGTC-AC 74
||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| | |
Sbjct 1 TATTTATGGATAATATGGTAAATAAATAAGGAACTTCTATTTAAAGCACAAAAGG-CAAT 59
Query 75 TGGTCTTCTTCGTGTGACTTCACCACTTTCTCATCTCCCAC-AAAAATGGCTCTCTCACT 133
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 60 TGGTCTTCTTCGTGTGACTTCACCACTTTCTCATCTCCCACAAAAAATGGCTCTCTCACT 119
Query 134 TCTTTCAGTCTTTATCTTTTTCCATGTCTTTACCAATGTTGTTTTTGCTGCTTCAAATGA 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCTTTCAGTCTTTATCTTTTTCCATGTCTTTACCAATGTTGTTTTTGCTGCTTCAAATGA 179
Query 194 GGAATCCAACGCCTTAGTTTCTTTACCAACGCCAACACTTCCATCGCCATCTCCGGCTAC 253
||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 180 GGAATCCAAGGCATTAGTTTCTTTACCAACGCCAACTCTTCCATCGCCATCTCCGGCTAT 239
Query 254 CAAACCGCCGTCGCCAGCTCTCAAACCGCCGACGCCGTCGTACAAGCCACCCACGCTGCC 313
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAAACCACCGTCGCCGGCTCTCAAACCGCCGACGCCGTCGTACAAGCCACCCACGCTGCC 299
Query 314 AACTACTCCTATTAAACCACCCACCACAAA-ACCTCCGGTCAAACCTCCAACTATTCCGG 372
||||||||||||||||||||| ||||||| || ||||||||||||||| || | |||||
Sbjct 300 AACTACTCCTATTAAACCACCTACCACAACTAC-TCCGGTCAAACCTCCCACCACTCCGG 358
Query 373 TTACACCAGTAAAACCTCCGGTTTCAACTCCTCCGATCAAACTACCGCCGGTACAACCAC 432
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TTACACCAACAAAACCTCCGGTTTCAACTCCTCCGATCAAACTACCGCCGGTACAACCAC 418
Query 433 CTACGTACAAACCCCCAACGCCAACAGTTAAACCACCGTCCGTCCAACCACCTACGTACA 492
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 419 CTACGTACAGACCCCCAACGCCAACAATTAAACCACCGTCCGTCCAACCACCTACGTACA 478
Query 493 AACCCCCAACTCCAACGGTTAAACCACCCACTACATCACCGGTTAAACCACCCACTACGC 552
|||||||||| ||| |||||||||||||||||||||||||| |||||||||| || ||||
Sbjct 479 AACCCCCAACGCCACCGGTTAAACCACCCACTACATCACCGATTAAACCACCAACGACGC 538
Query 553 CACCAGTTCAATCACCGCCGGTCCAACCACCTACGTACAAACCCCCAACGTCA-CCGGTT 611
|||| ||| || | ||||||||||||||||| |||||||||||||||||| || ||||||
Sbjct 539 CACCGGTTAAACCTCCGCCGGTCCAACCACCAACGTACAAACCCCCAACG-CAACCGGTT 597
Query 612 Aaaccacccaccacaac-tccaccggttaaacc-cc--c---ca--ccacga-cgccacc 661
||||||||||||||||| || |||||||||||| || | || || | | || ||||
Sbjct 598 AAACCACCCACCACAACATC-ACCGGTTAAACCACCTACGTACAAACCCCCAACGTCACC 656
Query 662 ggtcca-accaccTACGT-AC-A--A-TC---CC-CCAACT--AC-ACCGGTTAAACCAC 708
||| | |||||| ||| || | | | || |||||| || ||| || ||||| |
Sbjct 657 GGTT-ATACCACCCACGACACCACCAGTTAAACCACCAACTGCACCACCTGTCAAACCTC 715
Query 709 CTACAGCGCCGCCTGTCAAACCTCC-A--ACACCACCTCCCGTAAGAACTCGGATAGATT 765
| |||| || |||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 716 CGACAGTACC---TGTCAAACCTCCGACGACACCACCTCCCGTAAGAACTCGGATAGATT 772
Query 766 GCGTGCCTTTATGTGGGACGAGGTGTGGGCAACACTCGAGGAAGAACGTATGTATGAGAG 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 GCGTGCCTTTATGTGGGACGAGGTGTGGGCAACACTCGAGGAAGAACGTATGTATGAGAG 832
Query 826 CGTGCGTCACGTGCTGCTACCGCTGCAAGTGTGTTCCCCCAGGCACCTACGGTAATAAGG 885
||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 833 CGTGCGTCACGTGCTGCTACCGCTGCAAGTGTGTTCCTCCTGGCACGTACGGTAATAAGG 892
Query 886 AGAAGTGTGGATCTTGTTACGCCAACATGAAGACACGTGGTGGAAAATCCAAATGTCCTT 945
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 893 AGAAGTGTGGATCTTGTTACGCCAACATGAAGACACGTGGCGGAAAATCCAAATGTCCTT 952
Query 946 GAACCTTTATATGACGATGGTTGTTAAACGAAATAATTTAAATCAATGGAGTTTTTATAA 1005
|||||||| |||||||||||| ||| | |||||||||||||||||
Sbjct 953 GAACCTTTTTATGACGATGGT----AAA-----T---------CAATGGAGTTTTTATAA 994
Query 1006 GTTTGTAATGCGTTTGTTTTTGTTATAGTAATA-TT-GAGTTGGATCTTTGTTTACGGGA 1063
||||||||||||||| |||||||| ||||| || ||||||||||||||||||||| |
Sbjct 995 GTTTGTAATGCGTTTATTTTTGTTTTAGTACCCCTTTGAGTTGGATCTTTGTTTACGGAA 1054
Query 1064 CGTAGAATA 1072
||||||||
Sbjct 1055 TGTAGAATA 1063
Score = 130 bits (70), Expect = 2e-29
Identities = 148/182 (81%), Gaps = 19/182 (10%)
Strand=Plus/Plus
Query 542 ACCCACTACGCCACCAGTTCAATCACCG-CCGGTCCAACCACCTACGTACAAACCCCCAA 600
|||| | |||||| || || || ||||| || ||||||||||||||||||||||||||||
Sbjct 429 ACCCCCAACGCCAACAATTAAACCACCGTCC-GTCCAACCACCTACGTACAAACCCCCAA 487
Query 601 CGTCACCGGTTAaaccacccaccacaactccaccggttaaaccccc--c-ac-c-ac-g- 653
|| ||||||||||||||||||| ||| || |||| ||||||| || | || | || |
Sbjct 488 CGCCACCGGTTAAACCACCCACTACA--TC-ACCGATTAAACCACCAACGACGCCACCGG 544
Query 654 --a--cg-ccaccggtccaaccaccTACGTACAATCCCCCAACTACA-CCGGTTAAACCA 707
| | || |||||||||||||| |||||||| |||||||| || ||||||||||||
Sbjct 545 TTAAACCTCCGCCGGTCCAACCACCAACGTACAAACCCCCAACG-CAACCGGTTAAACCA 603
Query 708 CC 709
||
Sbjct 604 CC 605
Score = 89.8 bits (48), Expect = 4e-17
Identities = 66/74 (89%), Gaps = 3/74 (4%)
Strand=Plus/Plus
Query 570 CCGGTCCAACCACCTACGTACAAACCCCCAACGTCACCGGTTAaaccacccaccacaact 629
||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||| |
Sbjct 619 CCGGTTAAACCACCTACGTACAAACCCCCAACGTCACCGGTTATACCACCCACGACA-C- 676
Query 630 ccaccggttaaacc 643
| ||| ||||||||
Sbjct 677 C-ACCAGTTAAACC 689
Score = 76.8 bits (41), Expect = 3e-13
Identities = 54/60 (90%), Gaps = 2/60 (3%)
Strand=Plus/Plus
Query 411 AAACTACCG-CCGGTACAACCACCTACGTACAAACCCCCAACGCCAACAGTTAAACCACC 469
|||| |||| || || |||||||||||||||||||||||||||||| | |||||||||||
Sbjct 448 AAACCACCGTCC-GTCCAACCACCTACGTACAAACCCCCAACGCCACCGGTTAAACCACC 506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43498248297
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5