BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G14940.1 Length=1742 Score E Sequences producing significant alignments: (Bits) Value Ahg488338 jgi|Araly1|488338|fgenesh2_kg.6__1472__AT5G14940.1 2784 0.0 > Ahg488338 jgi|Araly1|488338|fgenesh2_kg.6__1472__AT5G14940.1 Length=1726 Score = 2784 bits (1507), Expect = 0.0 Identities = 1661/1734 (96%), Gaps = 15/1734 (1%) Strand=Plus/Plus Query 16 tctctctctTTATCTCCCTCAATacacacacacacacacaaacacaAGCTTTAATATACT 75 ||| ||| ||| |||||||| | |||| |||| ||||||||||||||||||||||||| Sbjct 1 TCT-TCT-TTTCTCTCCCTC---A-ACACGCACAGACACAAACACAAGCTTTAATATACT 54 Query 76 CTCTTTTGATGGCTGGAGGAGAGAAAAGAAGAGGACTTAGTAAATCTTGTGCTCTTCTCA 135 ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 55 CTC-TTTGATGGCTGGAGGAGAGAAAAGAAGAGGACTTAGCAAATCTTGTGCTCTTCTCA 113 Query 136 TAGTGATTGCTGGGATAGAGAGATATGCATTCAAAGGAGTTGCATCAAACTTAGTGACAT 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 114 TAGTGATTGCTGGGATAGAGAGATATGCATTCAAAGGAGTTGCATCAAACTTAGTGACAT 173 Query 196 ATCTAACTGATGTAGTGAAGATGAGCAATTCAAGAGCAGCCACGACTGTGAACACTTGGA 255 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 174 ATCTAACTGATGTGGTGAAGATGAGCAATTCAAGAGCAGCCACGACTGTTAACACTTGGA 233 Query 256 GTGGCTTCACTTTCATGTTGCCTCTCTTCTCTGCTCCTTTTGCCGATTCTTATTGGGACA 315 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 234 GTGGCTTCACTTTCATGTTGCCTCTCTTCTCTGCTCCTTTCGCCGATTCTTATTGGGACA 293 Query 316 GATTCTTCACCATCCTTGCTTCTTCTTCTCTCTACTTTGTGGGTCTAGTGGGATTGACAT 375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 294 GATTCTTCACCATCCTTGCTTCTTCTTCTCTCTACTTTGTGGGTCTAGTGGGATTGACAT 353 Query 376 TTACGGCATTTGCTGGGTCACGTTCGACTACAAAAACAATCTCTCTTTACTTCCTCTACA 435 ||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 354 TTACGGCATATGCTGGGTCACGTTCCACTACAAAAACCATCTCTCTTTACTTCCTCTACA 413 Query 436 CTTCACTTTCCCTCGTCGCTCTAGGCCTTGGCGTCTTAAACCCATCTCTACAAGCCTTTG 495 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 414 CTTCACTCTCCCTCGTCGCTCTTGGCCTTGGCGTCTTAAACCCATCTCTACAAGCCTTTG 473 Query 496 GTGCTGACCAGCTCGACTACGACCTTGACCATGACAATGACCACGAGCCATCCTCAGAGA 555 ||||||||||||||||| | ||||||||||| | | |||||||||||||||||||||||| Sbjct 474 GTGCTGACCAGCTCGACCATGACCTTGACCAAGGCCATGACCACGAGCCATCCTCAGAGA 533 Query 556 ACAAAGAAGTCAAATCGAACCGCAAGACTCAGTTTTTCCAATGGTGGTATTTTGGTGTCT 615 ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 534 ACAAAGAAGTCAAATCGAACCGCAAGACTAAGTTTTTCCAATGGTGGTACTTTGGTGTCT 593 Query 616 GCGCCGGTAGTCTTCTAGGAGTCACCGTCATGGCTTACATCCAAGACACGTTTGGATGGG 675 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 594 GCGCCGGTAGTCTTCTAGGAGTCACCGTCATGGCTTATATCCAAGACACGTTTGGTTGGG 653 Query 676 TTATCGGTTTTGCAATCCCAACCGCTTCGATGTTGTTGTTGATCTTCTTGTTCTTGTGTG 735 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 654 TTATCGGTTTTGCAATCCCAACTGCTTCGATGTTGTTGTTGATCTTCTTGTTCTTGTGTG 713 Query 736 GCTGCGGGGTCTATGTTTATGCTGATCCAGACCTCAAAGCTAAACCATTTCAAAGGATAT 795 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct 714 GCTGCGGGGTTTATGTCTATGCTGATCCAGACCTCAAAGCTAAACCATTTCAAAAGATAT 773 Query 796 TAGAGATTATCAAAGAAAGAGTGTGTGGAAGAAATAAGATCACTCTTGTTAACGACCACG 855 |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 774 TAGAGAGTATCAAAGAAAGAGTGTGTGGAAGAAATAAGATCACTCTTGTGAACGACCACG 833 Query 856 ATTTAAATGCCATGGAACTAGAGCTGCAAGATCAGAAGCCTCTATGTAACTGTAGCAACA 915 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 834 ATTTGAATGCCATGGAGCTAGAGCTGCAAGATCAGAAGCCTCTATGTAACTGTAGCAACA 893 Query 916 CTGAAGC---TA--A-TACTACTACCAAGAGCTTACCTGATGATCATAAAAGCTGCAAAA 969 ||||||| || | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 894 CTGAAGCTAATACTACTACTACTACCAAGAGCTTACCTGATGATCATAAAAGCTGCAAAA 953 Query 970 CCGGTTTTTCGGGGCTTGAAACCGTCAAGCTATTGCTTCGACTTTTACCTATATGGACGA 1029 ||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 954 CCGGTTTCTCAGGGCTTGAAACCGTCAAGCTATTGCTTCGGCTTTTACCTATATGGACGA 1013 Query 1030 TGCTTCTTATGTTTGCAGTTATATTCCAACAACCCGCGACCTTTTTCACAAAGCAAGGTA 1089 ||||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||||| Sbjct 1014 TGCTTCTAATGTTTGCAGTCATATTCCAGCAACCCGCAACCTTTTTCACAAAGCAAGGTA 1073 Query 1090 TGACTATGAAGAGAAACATCGGACCAAACTTCAAGATCCCACCAGCAACACTACAAAGCA 1149 |||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| Sbjct 1074 TGACTATGAAGAGAAACATCGGACCAAACTTCAAAATCCCACCCGCAACGCTACAAAGCA 1133 Query 1150 CTATCACTTTATCCATAATCCTTCTTATGCCCTTCTACGACAAAATCTTGATACCGATCG 1209 | |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 1134 CAATCACTTTATCCATAATCCTTCTTATGCCCTTTTACGACAAAATCTTGATACCAATCG 1193 Query 1210 CCaaaaaactaacgaaaaacgaaaaGGGTATTTCTGTGAAGGAAAGAATGGGGATTGGGA 1269 |||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| Sbjct 1194 CCAAAAAATTAACGAAAAACGAAAAAGGTATTTCCGTCAAGGAAAGAATGGGGATTGGGA 1253 Query 1270 TGTTCCTGTCCATCATCGCCATTGTTATTGCCGCGTTAGTCGAAAGAAAAAGACTAAAGA 1329 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1254 TGTTCCTATCCATCATCGCCATTGTTATTGCCGCGTTAGTCGAAAGAAAAAGACTAAAGA 1313 Query 1330 TAAGCAAAATGATGAAGACTACACCTAATTTGGACCCCG-TAAGCATATTGTGGCTCCTA 1388 ||||||||||||||||||||||||| |||||||| ||| | |||||||||||||||||| Sbjct 1314 TAAGCAAAATGATGAAGACTACACCGAATTTGGA-TCCGTTGAGCATATTGTGGCTCCTA 1372 Query 1389 CCTCAGTACATTCTATTGGGAATCTCGGACATTTTCACAGTTGTTGGAATGCAAGAGTTC 1448 ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 1373 CCTCAATACATTCTATTGGGAATATCGGACATTTTCACGGTTGTTGGAATGCAAGAGTTC 1432 Query 1449 TTCTACAGCGAGGTTCCTGTTAGCATGAGAACAATGGGATTTGCTTTGTACACAAGCGTT 1508 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1433 TTCTACAGCGAGGTTCCTGTTAGCATGAGAACAATGGGATTTGCTTTGTACACAAGCGTT 1492 Query 1509 TTCGGTGTGGGGAGTTTTGTGAGTGCTGCGTTGATTTCGATAATAGAGACTTACACGAGC 1568 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| Sbjct 1493 TTCGGTGTGGGGAGTTTTGTTAGTGCTGCGTTGATTTCGATAATCGAGACTTACTCGAGC 1552 Query 1569 TCAAGAGGTGGAAAACATAACTGGTTTGCAGATGATATGTCGGAAGCTAGACTTGATAAC 1628 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1553 TCAAGAGGTGGAAAACATAACTGGTTTGCAGATGATATGTCGGAAGCTAGACTTGATAAC 1612 Query 1629 TATTATTGGCTTTTGGCTTTCACAAGTGCTATTAGCTTCTTGATGTATATTGTTATTTGC 1688 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1613 TATTATTGGCTTTTGGCTTTCACTAGTGCTATTAGCTTCTTGATGTATATTGTTATTTGC 1672 Query 1689 AAGCATTTCAAGAGTAGAAGTGATGATGATGATCAATGTGATACAAATTGTTAA 1742 ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1673 AAGCATTTCAAGAGTAGAAGTGATGCTGATGATCAATGTGATACAAATTGTTAA 1726 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65362860420 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5