BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G14970.1
Length=1265
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488341 jgi|Araly1|488341|fgenesh2_kg.6__1475__AT5G14970.1 1934 0.0
> Ahg488341 jgi|Araly1|488341|fgenesh2_kg.6__1475__AT5G14970.1
Length=1226
Score = 1934 bits (1047), Expect = 0.0
Identities = 1174/1234 (95%), Gaps = 14/1234 (1%)
Strand=Plus/Plus
Query 34 gagagagagaagaa-acagaaacagaaacagagCTCGAGCTCGAGACGCTC-AATATTAA 91
|||||||| ||||| | ||||||||||||||| ||||||||||| ||| ||||||
Sbjct 1 GAGAGAGAAAAGAAGA-AGAAACAGAAACAGA----GAGCTCGAGACTCTCTCTTATTAA 55
Query 92 TGGCGGCCGCATCAGCACGAGCTTTCTTCATGCTCTCTCGTGTAACTGACCTTTCAAAGA 151
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 56 TGGCGGCCGCATCAGCACGAGCCTTCTTCATGCTCTCTCGTGTAACGGACCTATCAAAGA 115
Query 152 AAAAGCTAATCCTTCACCAACCACCACCGTCGTCATCTCCTCACCGGCTACCTTATGCTC 211
| ||||||||||||||||||||||||||||| || |||||||||||| |||||| |||||
Sbjct 116 AGAAGCTAATCCTTCACCAACCACCACCGTCTTCGTCTCCTCACCGGTTACCTTGTGCTC 175
Query 212 CGAATCGTGCGGTGTCTTCCTCCGCTGTAATCAGCTGTCTCAGCGGTGGTGGTGTTTCCT 271
|||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 176 CGAATCGTGCCGTGTCTTCCTCCGCTGTAATTAGCTGTCTCAGCGGTGGTGGAGTTTCCT 235
Query 272 CCGACGATTCGTATGTATCTACTCGTCGGTCTAAGTTAGATCGAGGTTTCGCTGTGATCG 331
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CCGACGATTCATATGTGTCTACTCGTCGGTCTAAGTTAGATCGAGGTTTCGCTGTGATCG 295
Query 332 CGAATTTGGTGAATCGGATCCAGCCGCTTGATACGTCTGTTATCTCTAAAGGCTTATCTG 391
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 296 CGAATTTGGTGAACCGGATCCAGCCGCTTGATACGTCTGTTATCTCTAAAGGCTTATCCG 355
Query 392 ATTCAGCTAAGGATTCGATGAAACAGACGATTTCTTCTATGCTTGGTCTTCTTCCTTCCG 451
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 356 ATTCAGCTAAGGATTCGATGAAGCAGACGATTTCTTCTATGCTTGGACTTCTTCCTTCCG 415
Query 452 ATCAATTTTCCGTTTCCGTTACTATCTCCGA-ACAGCCTCTTTATCGTCTCCTTATTTCT 510
||||||| |||||||||||||| |||||||| | |||||||||| |||||||||||||||
Sbjct 416 ATCAATTCTCCGTTTCCGTTACCATCTCCGAGA-AGCCTCTTTACCGTCTCCTTATTTCT 474
Query 511 TCCATCATCACCGGGTATACATTGTGGAATGCGGAGTATCGTGTATCACTGAGGAGGAAT 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TCCATCATCACCGGGTATACATTGTGGAATGCGGAGTATCGTGTATCACTGAGGAGGAAT 534
Query 571 TTTGATATACCGATTGATCCTAGAAAGGAGGAGGAGGATCAATCTTCGAAAGACAATGTT 630
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TTCGATATACCGATTGATCCTAGAAAGGAGGAGGAGGATCAATCTTCGAAAGACAATGTT 594
Query 631 AGATTTGGTTCAGAGAAGGGAATGAGTGAGGATTTAGGGAATTGTGTTGAGGAATTTGAG 690
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 595 AGATTTGGTTCAGAGAAGGGAGTGAGTGAGGACTTAGGGAATTGTGTTGAGGAATTTGAG 654
Query 691 AGACTGAGTCCTCAGGTGTTTGGAGACTTGTCACCTGAAGCGTTGAGTTATATTCAGCTT 750
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 655 AGATTGAGTCCTCAGGTGTTTGGAGACTTGTCACCTGAAGCGTTGAGCTATATTCAGCAT 714
Query 751 TTGCAGTCTGAGCTATCTTCCATGAAAGAGGAGCTAGATTCACAAAAGAAGAAAGCTTTG 810
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TTGCAGTCTGAGTTATCTTCCATGAAAGAGGAGCTAGATTCACAAAAGAAGAAAGCTTT- 773
Query 811 A-GGATAGAATGTGAGAAAGGAAACAGGAATGATTTGTTGGATTATTTGCGTTCTTTAGA 869
| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 774 ACAGATAGAATGTGAGAAAGGAAACAAGAATGATTTGTTGGATTATTTGCGTTCCTTAGA 833
Query 870 TCCCGAGATGGTGACTGAGTTATCTCAACTGTCTTCACCGGAAGTGGAAGAGATTGTGAA 929
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 834 TCCCAAGATGGTGACTGAGTTATCTCAACTGTCTTCACCGGAAGTGGAAGAGATCGTGAA 893
Query 930 CCAGCTTGTCCAAAACGTATTAGAGAGGCTCTTCGAAGACCAGACTACTTCAAATTTCAT 989
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 894 CCAACTTGTCCAAAACGTGTTAGAGAGGCTCTTCGAAGACCAGACTACTTCAAATTTCAT 953
Query 990 GCAAAATCCTGGCATAAGGACTACAGAAGGTGGTGATGGAACTGGTAGAAAGGTGGACAC 1049
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 954 GCAAAATCCTGGCATAAGGACTACAGATGGTGGTGATGGAACTGGTAGAAAGGTAGACAC 1013
Query 1050 ATCCAGGGATTACCTTGCAAAGCTCCTTTTCTGGTGCATGCTATTGGGACATCATTTAAG 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 ATCCAGGGATTACCTTGCAAAGCTCCTTTTCTGGTGCATGCTATTGGGACATCATTTAAG 1073
Query 1110 AGGTTTGGAGAATAGATTACATCTCAGCTGTGTTGTTGGGTTGCTGTAATATCAGAGAAT 1169
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1074 AGGTTTGGAGAATAGATTACATCTCAGTTGTGTCGTTGGGTTGCTGTAATATCAGAGAAT 1133
Query 1170 CATAAAAAGGAGAC--AAGATAAAAAAGAAACACAAATGTATATTCTTCTCCCCCATTTT 1227
|| ||||||||||| || | ||||||||||||| |||||||||||||||||| ||||||
Sbjct 1134 CAGAAAAAGGAGACCCAAAA-AAAAAAGAAACACCAATGTATATTCTTCTCCCTCATTTT 1192
Query 1228 GATTTCTTTAATCTAAGCGTTAAGTTATTATCTA 1261
||||||||||||||||||||||||||||||||||
Sbjct 1193 GATTTCTTTAATCTAAGCGTTAAGTTATTATCTA 1226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47272417080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5