BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G15230.1 Length=629 Score E Sequences producing significant alignments: (Bits) Value Ahg488368 jgi|Araly1|488368|fgenesh2_kg.6__1502__AT5G15230.1 869 0.0 > Ahg488368 jgi|Araly1|488368|fgenesh2_kg.6__1502__AT5G15230.1 Length=615 Score = 869 bits (470), Expect = 0.0 Identities = 580/628 (92%), Gaps = 28/628 (4%) Strand=Plus/Plus Query 10 AAACTCCTCTCTCAGTACACTTCTTTTCATACCT----C-----AAGAGACTAAAACTAG 60 |||||||||||||||||||||||||||||||||| | |||| || |||||||| Sbjct 1 AAACTCCTCTCTCAGTACACTTCTTTTCATACCTCAAACAAAAAAAGATACCAAAACTAG 60 Query 61 TTTGAGGAGATTTAGAGGAGTGTTTGGTTCTTTGGATAACAATATCCCAAACTGAAAATG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTTGAGGAGATTTAGAGGAGTGTTTGGTTCTTTGGATAACAATATCCCAAACTGAAAATG 120 Query 121 GCTAAGTCATATGGAGCTATCTTCCTCTTGACCCTCATTGTCCTCTTCATGCTTCAAACC 180 |||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 121 GCTAAGTCATGTGGAGCTATCTTCCTCTTGGCTCTCATTGTCCTCTTCATGCTTCAAACC 180 Query 181 ATGGTTATGGCCTCAAGTGGATCTAATGTGAAGTGGAGCCAGAAACGTTATGGACCAGGA 240 || |||||||||||||||||||||||||| || | ||||||||||||||||||||||||| Sbjct 181 ATTGTTATGGCCTCAAGTGGATCTAATGTAAATTTGAGCCAGAAACGTTATGGACCAGGA 240 Query 241 AGCCTGAAACGT-ACCCAATGCCCATCGGAATGTGATAGGAGGTGTAAAAAGACACAGTA 299 |||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| Sbjct 241 AGCCTGAAACGTTACC-AATGCCCATCGGAATGCGATAGGAGGTGTAAAAAGACACAGTA 299 Query 300 CCACAAGGCTTGCATTACGTTCTGCAACAAATGCTGCAGGAAGTGTCTCTGTGTGCCTCC 359 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 300 CCACAAGGCTTGCATTACGTTCTGCAACAAATGCTGCAGAAAGTGTCTCTGTGTGCCTCC 359 Query 360 GGGTTACTATGGGAACAAACAAGTTTGCTCCTGCTACAACAACTGGAAAACTCAAGAGGG 419 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 360 GGGTTACTATGGGAACAAACAAGTTTGCTCTTGCTACAACAACTGGAAAACTCAAGAGGG 419 Query 420 TGGACCAAAATGCCCTTGAAAAAATCTCCCTT--CGTTCC-CTTTTTAT--AATAAAAAT 474 |||||| |||||||||||||| |||||| ||| |||||| |||||| | ||||||||| Sbjct 420 TGGACCTAAATGCCCTTGAAATAATCTCACTTATCGTTCCTCTTTTTTTTTAATAAAAAT 479 Query 475 TTTCAACTATAACTAAATTTCCTTTGATCAATGTTTTATCTACTTTATTCCTAATGTTGT 534 | ||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||| Sbjct 480 GT-CAACTATAACTAAATCTCCTTTGATGAATGTTTTATCTACTTTATTCCGAATGTTGT 538 Query 535 AATGTTATGTCACTCCTTTTCGGATTTTGTTCTAAATCCTaaaaaaaaTGAGAGTGGCCC 594 |||||||||||||||||||| | || |||||||||||||||| ||||||||||| Sbjct 539 AATGTTATGTCACTCCTTTT-G--TT-----CTAAATCCTAAAAAAA-TGAGAGTGGCC- 588 Query 595 TATGAATGATATTTTTCATGAATACTTG 622 ||||||||||||||| |||||||||||| Sbjct 589 TATGAATGATATTTT-CATGAATACTTG 615 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23026241868 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5