BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15250.2
Length=2214
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893435 jgi|Araly1|893435|Al_scaffold_0006_1431 1825 0.0
> Ahg893435 jgi|Araly1|893435|Al_scaffold_0006_1431
Length=2058
Score = 1825 bits (988), Expect = 0.0
Identities = 1115/1177 (95%), Gaps = 5/1177 (0%)
Strand=Plus/Plus
Query 27 ATGAAAATGGCATCATCATCATCAGCTTTGTCTTTCCCTCTCTCCAACATCCCAACCTGT 86
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGAAAATGGCATCATCATCATCAGCTTTGTCTCTCCCTCTCTCCAACATCCCAACCTGT 60
Query 87 AGTAAGAAGTCTCAACAATTTCAAAAACCGGCTTCTTTATCCAAATCCAGTCACACACAT 146
| ||||||||| ||| | ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 AATAAGAAGTCCCAAGAGTTTCAAAAACCGGCTCCTTTATCCAAATCCAGTCACACACAT 120
Query 147 AAACCTAGTCTCAAAACCCAAATTTTACACCACAAATTCACTAAGAGAAATTTACTGAGT 206
||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 121 AAACCTAGTCTTAAAACCCAAACTTTACACCACAAACTCACTAAGAGAAATTTACTGAGT 180
Query 207 TTGACGACTGCCTTGGGATTTACGTCAGCGCTAGGAACTGTTCTTGCTCACCCCGCAAAA 266
|| |||||||||||||||||||||| | ||||||||| |||||||||||||||||| |
Sbjct 181 TT---GACTGCCTTGGGATTTACGTCATCTCTAGGAACTTTTCTTGCTCACCCCGCAAGA 237
Query 267 GCTGAACCAGAAGCTCCCATCGAAGCCACTTCCAATAGAATGTCGTATTCGAGATTCCTG 326
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 238 GCTGAACCAGAAGCTCCCATCGAAGCCACTTCCAATAGAATGTCGTACTCGAGATTCCTG 297
Query 327 CAGCATCTGAAAGAGAATGAAGTGAAGAAAGTTGACTTGATCGAGAACGGAACGGTTGCG 386
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 298 CAGCATCTGAAAGAGAATGAAGTGAAGAAAGTTGACTTGATCGAGAACGGAACCGTTGCG 357
Query 387 ATCGTAGAGATCTCTAATCCAGTAGTAGGAAAGATCCAGAGGGTTAGGGTTAACCTTCCC 446
|||| ||||||||||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 358 ATCGCAGAGATCTCTATTCCAGCATTAGGAAAGATCCAGAGGGTTAGGGTTAACCTTCCC 417
Query 447 GGTTTACCAGTCGATCTGGTGAGGGAGATGAAGGAGAAGAACGTCGATTTCGCTGCTCAT 506
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GGTTTACCGGTTGATCTGGTGAGGGAGATGAAGGAGAAGAACGTCGATTTCGCTGCTCAT 477
Query 507 CCCATGAATGTGAACTGGGGAGCTTTCTTGCTCAACTTCTTGGGGAATTTAGGGTTTCCT 566
|||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 478 CCCATGGATGTGAATTGGGGAGCTTTCTTGCTCAACTTCTTGGGAAATTTAGGGTTTCCT 537
Query 567 TTGATCTTGCTTGTCTCTCTGCTTTTAACATCTTCTTCAAGAAGAAACCCTGCTGGACCT 626
|||||||| |||| ||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 538 TTGATCTTACTTGGCTCTCTGCTTTTAACATCTTCTTCAAGAAAAAATCCTGGTGGACCC 597
Query 627 AACTTGCCTTTTGGTCTTGGAAGAAGCAAAGCTAAGTTTCAGATGGAGCCTAACACAGGG 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AACTTGCCTTTTGGTCTTGGAAGAAGCAAAGCTAAGTTTCAGATGGAGCCTAACACAGGG 657
Query 687 ATAACGTTCGAGGATGTAGCAGGAGTAGACGAAGCCAAGCAAGACTTTGAAGAGATCGTT 746
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 658 ATAACGTTCGACGATGTAGCAGGAGTAGACGAAGCCAAGCAAGACTTCGAAGAGATCGTT 717
Query 747 GAATTTTTGAAAACCCCAGAGAAATTCTCAGCTTTGGGGGCTAAAATCCCAAAAGGCGTC 806
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GAATTCTTGAAAACCCCAGAGAAATTCTCAGCTTTGGGGGCTAAAATCCCAAAAGGCGTC 777
Query 807 TTGTTGACCGGACCGCCAGGAACCGGAAAGACACTCTTGGCCAAGGCTATAGCCGGAGAA 866
|||||||| |||||||| ||||| ||||| || |||||||||||||||||||| ||||||
Sbjct 778 TTGTTGACTGGACCGCCGGGAACTGGAAAAACTCTCTTGGCCAAGGCTATAGCTGGAGAA 837
Query 867 GCCGGTGTTCCttttttttCATTGTCTGGTTCGGAGTTCATAGAGATGTTTGTTGGTGTA 926
||||||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 838 GCCGGTGTTCCGTTTTTCTCATTGTCCGGATCGGAGTTCATAGAGATGTTTGTTGGTGTA 897
Query 927 GGAGCATCTAGAGCTAGAGACTTGTTTAACAAGGCAAAGGCTAATTCACCTTGTATAGTG 986
||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 898 GGAGCATCTAGGGTTAGAGACTTGTTCAACAAGGCAAAGGCTAATTCACCTTGTATAGTG 957
Query 987 TTCATTGATGAGATTGATGCTGTTGGGAGAATGAGAGGAACCGGTATAGGAGGAGGAAAC 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TTCATTGATGAGATTGATGCTGTTGGGAGAATGAGAGGAACCGGTATAGGAGGAGGAAAC 1017
Query 1047 GACGAACGTGAGCAGACGCTAAACCAGATATTAACCGAAATGGATGGGTTTGCGGGGAAT 1106
||||||||||||||||| ||||||||||| ||||| |||||||| |||||| ||||||||
Sbjct 1018 GACGAACGTGAGCAGACACTAAACCAGATTTTAACTGAAATGGACGGGTTTACGGGGAAT 1077
Query 1107 ACCGGAGTAATTGTGATCGCTGCAACGAACCGGCCAGAGATTCTAGACTCTGCTTTGCTC 1166
|||||||| ||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1078 ACCGGAGTGATTGTAATCGCTGCAACGAACCGGCCGGAAATTCTAGACTCTGCTTTGCTC 1137
Query 1167 CGACCAGGAAGATTCGATAGGCAGGTAT--GTTGGTT 1201
||||||||||||||||| |||||||| | |||||||
Sbjct 1138 CGACCAGGAAGATTCGACAGGCAGGTTTCCGTTGGTT 1174
Score = 1352 bits (732), Expect = 0.0
Identities = 850/907 (94%), Gaps = 8/907 (1%)
Strand=Plus/Plus
Query 1257 CAGGTTTCTGTTGGTTTACCGGATATAAGAGGAAGAGAGGAGATATTAAAAGTTCACAGC 1316
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1159 CAGGTTTCCGTTGGTTTACCGGATATAAGAGGAAGAGAAGAGATATTAAAAGTTCACAGC 1218
Query 1317 AGAAGCAAGAAACTCGACAAAGATGTATCTTTGAGCGTAATTGCCATGAGAACTCCAGGT 1376
| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1219 AAAAGCAAGAAACTCGACAAAGATGTGTCTTTGAGCGTGATTGCCATGAGAACTCCAGGT 1278
Query 1377 TTTAGTGGAGCTGACTTGGCCAATCTTATGAACGAAGCAGCGATTCTCGCCGGAAGAAGA 1436
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1279 TTCAGTGGAGCTGACTTGGCGAATCTTATGAACGAAGCCGCGATTCTCGCCGGAAGAAGA 1338
Query 1437 GGAAAAGACAAGATTACCCTTACAGAGATCGACGACTCTATCGATCGGATAGTCGCCGGA 1496
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 1339 GGAAAAGACAAGATTACCCTTACAGAGATTGACGACTCTATCGATCGAATTGTCGCCGGA 1398
Query 1497 ATGGAAGGGACAAAGATGATCGACGGTAAAAGTAAAGCGATTGTAGCGTACCATGAAGTA 1556
||||||||||| |||||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1399 ATGGAAGGGACGAAGATGGTCGACGGTAAAAGCAAAGCGATTGTAGCGTATCATGAAGTA 1458
Query 1557 GGACATGCAATTTGTGCGACTTTGACGGAGGGTCATGATCCGGTTCAGAAAGTTACGTTG 1616
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1459 GGACACGCAATTTGTGCGACTTTGACGGAGGGTCACGATCCGGTTCAGAAAGTTACGTTA 1518
Query 1617 GTTCCTAGAGGTCAAGCACGTGGTCTCACGTGGTTCTTACCGGGAGAAGATCCGACATTG 1676
||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 1519 GTTCCTAGAGGTCAAGCACGTGGTCTCACGTGGTTTTTGCCGGGAGAAGATCCGACTTTG 1578
Query 1677 GTGTCTAAACAGCAATTGTTCGCTAGAATCGTCGGAGGACTCGGAGGCAGAGCCGCCGAA 1736
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1579 GTGTCTAAACAGCAATTGTTCGCTAGAATCGTCGGAGGACTCGGAGGCAGAGCCGCTGAA 1638
Query 1737 GATGTAATTTTTGGAGAACCGGAGATAACCACCGGCGCTGCCGGTGATCTCCAGCAAGTC 1796
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1639 GATGTAATTTTTGGAGAACCGGAGATAACCACCGGCGCCGCCGGTGATCTCCAGCAAGGC 1698
Query 1797 ACTGAGATAGCAAGACAGATGGTGACGATGTTTGGTATGTCGGAAATCGGTCCATGGGCA 1856
||||||| |||||||||||||||||||||||| || ||||| || || ||||| ||||||
Sbjct 1699 ACTGAGACAGCAAGACAGATGGTGACGATGTTCGGCATGTCCGAGATTGGTCCGTGGGCA 1758
Query 1857 CTAACCGACCCAGCGGTTAAGCAAAACGATGTGGTTCTACGGATGCTAGCGAGGAACTCA 1916
|||||||||||||||||||||||||||| || |||||||| ||| |||||||||||||
Sbjct 1759 TTAACCGACCCAGCGGTTAAGCAAAACGACGTAGTTCTACGTATGTTAGCGAGGAACTCC 1818
Query 1917 ATGTCCGAGAAACTTGCGGAGGATATTGATTCTTGCGTGAAGAAAATAATCGGTGACGCT 1976
|||||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1819 ATGTCCGAAAAACTCGCGGAAGAAATTGATTCTTGCGTGAAGAAAATAATCGGTGACGCT 1878
Query 1977 TACGAGGTTGCGAAA-AAGCACGTGAGGAATAATAGAGAAGCTATAGACAAGCTTGTTGA 2035
|||||| |||| ||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1879 TACGAGATTGC-AAAGAAGCACGTGAGGAATAACAGAGAAGCCATAGACAAGCTTGTTGA 1937
Query 2036 TGTTTTGTTGGAGAAAGAAACCTTAACGGGAGACGAGTTTCGAGCAATTCTGTCTGAGTA 2095
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1938 TGTTTTGTTGGAGAAAGAAACCTTAACGGGAGACGAGTTCCGAGCAATTCTGTCTGAGTA 1997
Query 2096 TACTGATCAACCGTTAAATACCGATGGCGATGTAAGAATTCGAATCAATGACTTGATTAG 2155
|||||||||||| ||||||||||||| || | || |||||||||| |||||||||||
Sbjct 1998 TACTGATCAACCATTAAATACCGATG---AT--A-GAGTTCGAATCAAAGACTTGATTAG 2051
Query 2156 TGTCTAA 2162
||| |||
Sbjct 2052 TGTTTAA 2058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83341456060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5