BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15400.1
Length=3503
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488386 jgi|Araly1|488386|fgenesh2_kg.6__1520__AT5G15400.1 5360 0.0
> Ahg488386 jgi|Araly1|488386|fgenesh2_kg.6__1520__AT5G15400.1
Length=3459
Score = 5360 bits (2902), Expect = 0.0
Identities = 3184/3319 (96%), Gaps = 23/3319 (1%)
Strand=Plus/Plus
Query 191 TCTCAAATCGAGTTTCGAGTGTTTGATTTGATTCGTAAAATCAATGGCGACGAGCAAACC 250
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 157 TCTCAAATCGAGTTTCGAGTG-TTGATTTGATTCGTAAAATCAATGGCGACGAGCAAACC 215
Query 251 TCAAAGATCGCCGGCTGAAATTGAGGATATAATCCTCCGGAAGATATTTTATGTAACCCT 310
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 216 TCAAAGATCGCCGGCTGAAATTGAGGATATTATCCTCCGGAAGATATTTTATGTAACCCT 275
Query 311 AACGGAATCAACTGATTCCGATCCTCGTATTGTTTACTTGGAGATGACGGCCGCTGAGAT 370
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 276 AACGGAATCAGCTGATTCCGATCCTCGAATTGTTTACTTGGAGATGACGGCCGCTGAGAT 335
Query 371 TCTCAGCGAAGGTAAAGAGCTTTTGCTTTCTCGTGATTTGATGGAGAGAGTTCTCATAGA 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 TCTCAGCGAAGGTAAAGAGCTTTTGCTTTCTCGTGATTTGATGGAGAGAGTTCTCATAGA 395
Query 431 TCGTCTCTCCGGCGACTTTTCCGACGCCGAACCGCCTTTCCCGTATTTAATCGGTTGCCA 490
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
Sbjct 396 TCGTCTCTCCGGCGACTTTTCCGACGCTGAACCGCCTTTCCCGTATTTACTCGGTTGCTA 455
Query 491 CCGTCGTGCTTACGACGAATCGAAGAAAATCCAGTCGATGAAGGATAAGAATCTGAGATC 550
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 456 CCGTCGTGCTTACGACGAATCGAAGAAAATCCAGTCGATGAAGGACAAGAATCTGAGATC 515
Query 551 GGAGATGGAGATTGTCACTAAACAAGCGAAGAAGCTTGCTGTTTCTTACTGTAGGATTCA 610
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 516 GGAGATGGAGATTGTGACTAAACAGGCGAAGAAGCTTGCTGTTTCTTACTGTAGGATTCA 575
Query 611 CTTGGGGAATCCTGACATGTTTGGGAACTCGGATAAACCTAGTGGTGGATTGGATAATAG 670
||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 576 CTTGGGGAATCCTGATATGTTTGGGAACTCGGATAAACCTACCGGTGGACTGGATAATAG 635
Query 671 GTTGAAGAAGAGGAATGTCTCTCCGGTTCTTCCGTTGATCTTTGCTGAGGTTGGTTCTGG 730
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 636 GTTGAAGAAGAGGAATGTCTCTCCGGTTCTGCCGTTGATCTTTGCTGAGGTTGGTTCTGG 695
Query 731 TTCGTTGGATATGTTTGGAGCTAGTAGCAGTGGGGTTCAAGCTCCTCCTGGGTTTTTGGA 790
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 696 TTCGTTGGATATGTTTGGAGCTAGTAGCAGTGGGGTTCAGGCTCCTCCGGGGTTTTTGGA 755
Query 791 TGAGTTTTTCAAAGACTCGGATTTTGATAGCTTGGACTCGATTCTAAAGGAGCTGTATGA 850
|||||| |||||||| || |||||||||||||||||| ||||||||||||||||||||||
Sbjct 756 TGAGTTCTTCAAAGATTCAGATTTTGATAGCTTGGACCCGATTCTAAAGGAGCTGTATGA 815
Query 851 GGATTTGAGGTCTACGGTTATAAATGTATCAGTGCTTGGAGATTTCCAGCCACCACTGAG 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 816 GGATTTGAGGTCTACGGTTATAAATGTATCAGTGCTTGGAGATTTCCAGCCACCATTGAG 875
Query 911 GGCACTCAAGTATCTTGTTAGCTTACCAGTAGGAGCTAAATCTCTGGTTAGTCATGAGTG 970
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 876 GGCACTTAAGTATCTTGTTAGCTTACCAGTAGGAGCTAAATCTCTGGTTAGTCACCAGTG 935
Query 971 GTGGGTTCCACGGGGTGCCTATATGAACGGCCGAGCAATGGAGTTGACTAGCATTCTTGG 1030
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 GTGGATTCCACGGGGTGCCTATATGAACGGCCGAGCAATGGAGTTGACTAGCATTCTTGG 995
Query 1031 GCCTTTCTTCCATATTAG-TGCGCTGCCAGATAATACACTATTCAAGAGTCAACCTGATG 1089
||||||||||||||||| | |||||||||||||| | |||||||||||||| |||||||
Sbjct 996 CCCTTTCTTCCATATTAGCT-CGCTGCCAGATAATTCGCTATTCAAGAGTCATCCTGATG 1054
Query 1090 TTGGGCAGCAGTGTTTCTCTGAAGCATCGGAACGTCGTCCCGCAGATTTATTATCATCCT 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 TTGGGCAGCAGTGTTTCTCTGAAGCATCGGAACGTCGTCCCGCAGATTTATTATCATCCT 1114
Query 1150 TCTCCACGATTAAAAATTTCATGAACATTTTGTACAGCGGGCTGCATGATGTATTGATGA 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1115 TCTCCACGATTAAAAATTTCATGAACATTTTGTACAGCGGGCTGCATGATGTACTGATGA 1174
Query 1210 TTTTACTTAAAAGTACTGATACCCGTGAGCGTGTTCTACAGTTTCTTGCAGAGGTGATCA 1269
|||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1175 TTTTACTTAAAAGTACCGATACCCGTGAGTGTGTTTTACAGTTTCTTGCAGAGGTGATCA 1234
Query 1270 ATGCAAATGCGTCTAGAGCCCATATACAGGTTGATCCAGTCTCTTGTGCTAGCTCAGGCA 1329
||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1235 ATGCAAATGCGTCGAGAGGCCATATACAGGTTGATGCAGTCTCTTGTGCTAGCTCAGGCA 1294
Query 1330 TGTTTGTTAACCTTAGTGCAGTAATGCTCCGGCTCTGTGAACCATTTTTAGACCCACATT 1389
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 TGTTTGTTAACCTCAGTGCAGTAATGCTCCGGCTCTGTGAACCATTTTTAGACCCACATT 1354
Query 1390 TAACGAAAAGGGATAAGATTGATCCAAAATACGCATTCTGTGGCCATCGCTTAAAATTAA 1449
|||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1355 TAACTAAAAGGGATAAGATTGATCCAAAATATGCATTCTGTGGTCATCGCTTAAAATTAA 1414
Query 1450 GCGACTTGACCGCTCTCCATGCATCATCCGAAGAAGTTACTGAGTGGATTGGCAAAGATG 1509
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1415 GCGACTTGACTGCTCTCCATGCATCATCCGAAGAAGTTTCTGAGTGGATTGGCAAAGATG 1474
Query 1510 CTATGGCAAACGCAAATGATGCTGGGCGAGAAAATGGGAACGAAAGTCGCTTGTTACAAT 1569
|||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1475 CTATGGCAAACGTAAATGGTGCTGGGCGAGAAAACGGGAACGAAAGTCGCTTGTTACAAT 1534
Query 1570 CCAAAGAAGCCACAAGTTCTAGTAGTAATGCTTCTGGGCAAAATGCAAAGTCAGCAACTA 1629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1535 CCAAAGAAGCCACAAGTTCTAGTAGTAATGCTTCTGGGCAAAATGCAAAGTCAGCAACTA 1594
Query 1630 AATACACTTTCATTTGTGAATGCTTCTTTATGACTGCTAGGGTCCTCAATTTGGGTCTCC 1689
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1595 AATACACTTTCATTTGTGAATGCTTCTTTATGACTGCGAGGGTCCTCAATTTGGGTCTCC 1654
Query 1690 TAAAAGCACTCTCTGACTTTAAACATCTTGCTCAGGACATCTCGAGAGGTGAAGATAATC 1749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1655 TAAAAGCACTCTCTGACTTTAAACATCTTGCTCAGGACATCTCGAGAGGTGAAGATAATC 1714
Query 1750 TTGCAACGCTAAAAGCCATGAGAGATCAAGCACCTTCTCCACAGTTGGAACTTGATATAT 1809
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1715 TTGCAACACTAAAAGCCATGAGAGATCAAGCACCTTCTCCACAGTTGGAACTTGATATAT 1774
Query 1810 CCCGAATGGAAAAAGAACTAGAGCTGTCTTCGCAGGAAAAGCTTTGCCATGAGGCCCAAA 1869
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1775 CCCGAATGGAAAAAGAACTAGAGCTGTATTCGCAGGAAAAGCTTTGCCATGAGGCCCAAA 1834
Query 1870 TATTGAGGGATGGAGATTTTATTCAGCGAGCTCTGTCTTTCTATCGCCTAATGGTTGTTT 1929
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1835 TATTGAGGGATGGAGATTTTATTCAGCGAGCTCTTTCTTTCTATCGCCTAGTGGTTGTTT 1894
Query 1930 GGTTAGTTGGACTAGTCGGTGGCTTTAAGATGCCTCTACCGTCAACTTGCCCTATGGAAT 1989
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1895 GGTTAGTTGGACTAGTTGGTGGCTTTAAGATGCCTCTACCGTCAACTTGCCCCATGGATT 1954
Query 1990 TCTCCTGTATGCCTGAGCATTTTGTTGAAGATGCAATGGAGTTGCTGATATTCGCTTCAA 2049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1955 TCTCCTGTATGCCTGAGCATTTTGTTGAAGATGCAATGGAGTTGCTGATATTCGCTTCAA 2014
Query 2050 GAATTCCCAAAGCTTTGGACGGGGTGCCGCTGGACGACTTTATGAACTTCATAATTATGT 2109
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 2015 GAATCCCCAAAGCTTTGGACGGGGTGCCACTGGACGACTTTATGAACTTCATAATCATGT 2074
Query 2110 TCATGGCAAGTCCTGAATATGTTAGAAACCCGTATCTCAGAGCAAAGATGGTTGAAGTTC 2169
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 2075 TCATGGCAAGTCCTGAATATATTAGAAACCCATATCTCAGAGCAAAGATGGTTGAAGTTC 2134
Query 2170 TGAACTGCTGGATGCCTCGTTCAAGTAGTTCTTCTTCTGCTACATCTACTCTCTTTGAGG 2229
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2135 TGAACTGCTGGATGCCTCGTTCAAGTAGTTCTTCTTCTGCTACGTCTACTCTCTTTGAGG 2194
Query 2230 GACATCAGTTATCGCTCGAGTATCTTGTCAGGAATTTACTGAAACTATATGTTGACATTG 2289
| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2195 GGCATCAGTTATCACTCGAGTATCTTGTCAGGAATTTACTGAAATTATATGTTGACATTG 2254
Query 2290 AGTTCACGGGTTCACACACTCAGTTCTATGACAAGTTCAATATTCGCCACAACATTGCCG 2349
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2255 AGTTCACGGGTTCACACACTCAGTTCTATGACAAGTTCAATATTCGCCACAACATTGCTG 2314
Query 2350 AGCTTTTAGAGTATCTCTGGCAGGTGCCTAGTCACCGAAATGCATGGAGACGGATTGCAA 2409
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2315 AGCTATTAGAGTATCTCTGGCAGGTGCCTAGTCACCGAAATGCGTGGAGACGGATTGCAA 2374
Query 2410 AAGACGAAGAGAAGGGCGTGTACTTGAACTTCTTAAACTTCTTAGTCAATGATAGCATCT 2469
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 2375 AAGACGAAGAGAAGGGCGTGTACTTGAACTTCTTAAACTTTTTAGTCAATGATAGCATTT 2434
Query 2470 ATCTTCTGGATGAAAGTCTAAACAAAATTCTCGAGATTAAACAAATCGAGGCAGACATGT 2529
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2435 ATCTTCTGGATGAAAGTCTAAACAAAATTCTCGAGATTAAACAAATCGAGGCAGAGATGT 2494
Query 2530 CAAATACTGCAGAGTGGGAGCAGAGACCAACTCAAGAGAGACAGGAGAGAACAAGACTCT 2589
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2495 CGAATACTGCAGAGTGGGAGCAGAGACCAACTCAAGAGAGACAGGAGAGAACAAGACTCT 2554
Query 2590 TCCATTCGCAGGAGAATATTGTTAGAATCGACATGAAGCTGGCAAATGAAGATGTGACTA 2649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2555 TCCATTCGCAGGAGAATATTGTTAGAATCGACATGAAGCTGGCAAATGAAGATGTGACTA 2614
Query 2650 TGCTTGCATTTACATCCGAGGAGATCACTGCCCCTTTCCTACTCCCTGAGATGGTTGAGA 2709
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 2615 TGCTTGCATTTACATCCGAGGAGATCACTGCCCCTTTTCTACTACCTGAGATGGTTGAGA 2674
Query 2710 GGGTTGCCAACATGCTTAACTACTTCTTGCTACAACTCGTGGGTCCACAGCGTAAATCTT 2769
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2675 GGGTTGCCAATATGCTTAACTACTTCTTGCTACAACTCGTGGGTCCACAGCGTAAATCGT 2734
Query 2770 TAAGCCTGAAAGATCCTGAGAAATATGAATTCCGTCCAAAACAGTTACTTAAACAGATCG 2829
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 2735 TAAGCTTGAAAGATCCTGAGAAGTATGAATTCCGTCCAAAACAGTTACTTAAACAGATTG 2794
Query 2830 TTCGCATATATGTTAATCTCGCAAGAGGAGACACAGTAAACATATTCCCTGGTGCCATCT 2889
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
Sbjct 2795 TTCGCATATATGTTAATCTCGCAAGAGGAGACACGGAAAACATATTCCCTGGTGCCATTT 2854
Query 2890 CCAGTGATGGCCGATCATATAATGAACAGCTATTCAATGCAGGAGCAGATGTGCTTAGGA 2949
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 2855 CCAGTGATGGCCGATCATATAACGAACAGCTATTCAATGCAGGAGCAGATGTGCTTAGAA 2914
Query 2950 GAATAGGTGAAGAGGGAAGAATCATTCAAGAGTTTATGGAGTTAGGCACAAAAGCCAAAG 3009
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2915 GAATAGGTGAAGAGGGAAGAATCATTCAAGATTTTATGGAGTTAGGCACAAAAGCCAAAG 2974
Query 3010 CTGCTGCTTCTGAAGCTCTGGATGCTGAAGCTGCACTTGGGGAAATACCAGACGAGTTCC 3069
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2975 CTGCTGCTTCTGAAGCTCTGGATGCTGAAGCTGCACTTGGCGAAATACCAGACGAGTTCC 3034
Query 3070 TTGACCCAATTCAGTACACGCTAATGAGAGATCCAGTAATACTTCCAAGCTCAAGAATCA 3129
||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 3035 TTGACCCAATTCAGTACACACTAATGAGAGATCCAGTGATTCTTCCAAGCTCAAGAATCA 3094
Query 3130 CAGTTGATCGTCCCATCATTCAACGTCATCTTCTCAGCGACAATCATGATCCATTTAACC 3189
|||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 3095 CAGTTGATCGACCCATCATTCAACGTCATCTTCTCAGCGACAATCACGATCCGTTTAACC 3154
Query 3190 GAGCACATTTGACATCGGATATGTTGATACCGGACATCGAGTTGAAGGCGAAAATCGATG 3249
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3155 GAGCACATTTGACATCGGATATGTTGATACCGGACATCGAATTGAAGGCGAAAATCGATG 3214
Query 3250 AGTTTGTGAAGTCGCATCAGTCTAAGAAACGGACAAGTGGAGAAGATAGCAGCAACAAGG 3309
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3215 AGTTTGTGAAGTCGCATCAGTCTAAGAAACGAACAAGTGGAGAAGATAGCAGCAACAAGG 3274
Query 3310 AAAGGATACAGACTACAAACAGTGATATGTTAATTGATTAATTATGTGTTCCAAAAGTAA 3369
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 3275 AAAGGATACAGACTACAAGCAGTGATATGTTAATTGATTAATTATGTGTTCCAAAAATAA 3334
Query 3370 CAAAATAATAACAATTA-TTCAGGACtttttttttttacttttgctaggctttcttttct 3428
| || | || || ||| || ||||||||| || || ||| || | |||
Sbjct 3335 TTTTTTTTTA-CTTTTTGTT-AGG-CTCTTTTTTTTT-CTATT---AGGATTGCGACTCT 3387
Query 3429 -attag-gatttatctatctattttagggcttgctttCCACTTATTTGATGCCACGGGaa 3486
| || | ||||||||||| | ||||||||||||||| |||||||||||||||| ||
Sbjct 3388 CA--AGTG-TTTATCTATCT-T---AGGGCTTGCTTTCCAATTATTTGATGCCACGGAAA 3440
Query 3487 -aaaaa--CTTATAAATAT 3502
||||| |||||||||||
Sbjct 3441 TAAAAAAACTTATAAATAT 3459
Score = 220 bits (119), Expect = 4e-56
Identities = 147/160 (92%), Gaps = 4/160 (3%)
Strand=Plus/Plus
Query 7 AAGAGTTCATAAACAAAAACCTACTCCCAGAAAGTTCTTCCAAATCTCTCGCCATGGTTT 66
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1 AAGAGTTCATAAACAAAAACCTACTCCCAGAAATTTCTTCCAAATCTC--GCCATGGTTT 58
Query 67 CTCTCTTCTTTCGTGAATTTTAGTTTTTCTAA-ATTTAATTATACTTTAAATTGCTAAGT 125
||||| |||||||| |||||||||||||| || ||||||||||||||||||||| |||||
Sbjct 59 CTCTCATCTTTCGTAAATTTTAGTTTTTC-AATATTTAATTATACTTTAAATTGATAAGT 117
Query 126 CCAAACTCTTTCGCTTTTGATTCATCGGTAATACAAGTTT 165
|| ||||||||||||| |||||||||| | ||||| ||||
Sbjct 118 CCCAACTCTTTCGCTTCTGATTCATCGCTGATACACGTTT 157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132288123748
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5