BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15500.2
Length=1511
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941035 jgi|Araly1|941035|scaffold_601579.1 1628 0.0
> Ahg941035 jgi|Araly1|941035|scaffold_601579.1
Length=1102
Score = 1628 bits (881), Expect = 0.0
Identities = 1022/1089 (94%), Gaps = 13/1089 (1%)
Strand=Plus/Plus
Query 338 GGTATGACGCCATTGCTAGTTGCGGTAAGTAGAAAGAAGATTGATCTGATGTCAGAATTC 397
|||||||| |||||||||||||| ||||| | |||||||||||||||||| |||||||||
Sbjct 18 GGTATGACACCATTGCTAGTTGCAGTAAGCAAAAAGAAGATTGATCTGATATCAGAATTC 77
Query 398 TTCTTGGGTTGTCCCGAAAGCATTGTGGACGCAAATGTGAACGGAGAAAACGCTCTTCAC 457
||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 78 TTCTTGGTTTGCCCCGAAAGCATTGTGGACGCAAACGTGAACGGAGAAAACGCTCTTCAC 137
Query 458 ATCGCCGTGAATAACTACGACCAAAGAGAAGGATTAAGCGTTCTTAAAGTTCTCATGGGA 517
|||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 138 ATCGCCTTGAGTAACTACGACCAAAGAGAAGGATTAAGCGTTATTAAAGTTCTCATGGGA 197
Query 518 TGGATCTTAAGATTGTGTCAAAAAGATGCAGAGTGGATCGAGACAAGAGTCATAAACCGA 577
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 198 TGGATCCTAAGATTGTGTCAAAAAGATGCAGAGTGGATCGAGACAAGAGTGATAAACCGA 257
Query 578 AGAGACAAAGACGGTAACACGCCTTTACATCTCGCGGCGTACGAGATCAATCGTCAAGCT 637
|||||||||||||||| ||| ||||||||||||||||||||||||| ||||| |||||||
Sbjct 258 AGAGACAAAGACGGTAGCACACCTTTACATCTCGCGGCGTACGAGAACAATCTTCAAGCT 317
Query 638 ATGAAATTGTTGTTAGAGAGCTCCAAGATTAACGTCAACATTGAGAACAAGAACGGTTTA 697
||||||||| |||||||||| || ||||||||||||||||| |||||||||| |||||||
Sbjct 318 ATGAAATTGATGTTAGAGAGTTCAAAGATTAACGTCAACATCGAGAACAAGACCGGTTTA 377
Query 698 ACCGTGT-TCGACATTGCTGTGTTACACAATAACAGAGAGATAGAGAGAATGGTTAAGAG 756
||||| | |||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 378 ACCGT-TCTCGACATTGCTGCATTACACAATAACAGAGAGACAGAGAGAATGGTTAAGAG 436
Query 757 ACATGGTGGAAAACGTTCGGTTTCTCTTGTCAAGATTAAGACAACATCGGATATACTCGC 816
|||||||||| |||||||||||||||| || ||||||||||||||||||||| |||||||
Sbjct 437 ACATGGTGGAGAACGTTCGGTTTCTCTGGTTAAGATTAAGACAACATCGGATCTACTCGC 496
Query 817 GTCGCAGCTTTCTTGGAGAGAATCGAGACGGACGAAGAAGATTCGGTTTTATTCTTGGAT 876
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 497 GTCGCAGCTTTCTTGGAGAGAATCGAGACGGACAAAGAAGATTCGGTTTTATTCTTGGAT 556
Query 877 CTCTGAAGAGAGAAGAAACGCTCTTTTAGTGGTCGCAACTCTCATCGTCACAGCTACATA 936
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||
Sbjct 557 CTCTGAAGAGAGAAGAAACGCTCTTTTAGTGGTCGCAGCTCTCATAGTCACAGCTACTTA 616
Query 937 TCAGACGGTTCTCCAACCTCCCGGAGGCGTGTCTGATGGCG-GTGGTCAAAA-----G-A 989
|||||| |||||||| |||||||| ||||| |||||||| | | |||||||| | |
Sbjct 617 TCAGACCGTTCTCCAGCCTCCCGGGGGCGTATCTGATGG-GAGCGGTCAAAACGGTGGAA 675
Query 990 GTGGAACAAGCGGTCCGAAAGCGGGTTCAGTGGTTATGGACGAGGTCTACTTTATCTGGT 1049
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 CTGGAACAAGCGGTCCGAAAGCGGGTTCAGTGGTTATGGACGAGGTCTACTTTATCTGGT 735
Query 1050 TATGGTTGTGGAACAGTGCGGGGTTCTGCTTTGCGATTGAGATGATGATACGTTTGTTGA 1109
||||||| |||||||||||||| |||| |||||| |||||||||||||||||||||||||
Sbjct 736 TATGGTTATGGAACAGTGCGGGTTTCTACTTTGCCATTGAGATGATGATACGTTTGTTGA 795
Query 1110 GTTTAGGACAAGAGAGTATGTTTTGGTATTACCCTCTGTTCGTTCCTATGGTCTTGGCTT 1169
|||||||||||||||||||||| |||||||| ||||||||||||||| || |||||||||
Sbjct 796 GTTTAGGACAAGAGAGTATGTTCTGGTATTATCCTCTGTTCGTTCCTCTGCTCTTGGCTT 855
Query 1170 ACTCTGTTGCAGGGGATGTGATCAAGCCGAACGCAAGAGCGTACACGATCGCAGGTGTGG 1229
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 ACTATGTTGCAGGGGATGTGATCAAGCCGAACGCAAGAGCGTACACGATCGCAGGTGTGG 915
Query 1230 GTGCGATCGTGGTTCTTATAATTTGGGGATTGGTAGTTTGGTTTTGGGAATGGGTGCAGT 1289
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 916 GTGCGATCGTGGTTCTTATAATTTGGGGATTGGTAGTTCGCTTTTGGGAATGGGTGCAGT 975
Query 1290 CTAAGAGAACCAAGCAA-CGTGGACCCAAGAGTGGATTGGTTTGGGAAGGTTTCACTACG 1348
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 CTAAGAGAACCAAG-ATGCGTGGACCCAAGAGTGGATTGGTTTGGGAAGGTTTCACTACG 1034
Query 1349 TTGGATCAAGCTAGAGGTGTTGCGCCTAATCGGTATGTGATTAGGTAATCTTAATTTCCT 1408
|||||||||||||||||| |||||||||||||||||| ||||||||||| ||| ||||||
Sbjct 1035 TTGGATCAAGCTAGAGGTTTTGCGCCTAATCGGTATGGGATTAGGTAATTTTA-TTTCCT 1093
Query 1409 CTTGTTATT 1417
|||||||||
Sbjct 1094 CTTGTTATT 1102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56564013825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5