BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15640.1
Length=1554
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941053 jgi|Araly1|941053|scaffold_601597.1 1724 0.0
> Ahg941053 jgi|Araly1|941053|scaffold_601597.1
Length=1012
Score = 1724 bits (933), Expect = 0.0
Identities = 985/1011 (97%), Gaps = 0/1011 (0%)
Strand=Plus/Plus
Query 201 CAGCTTCCGTGAGAGAGTCATGGACACGCCACCGACTTCTCGTATCGCATCTTTTGGTCA 260
|||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 2 CAGCATCCGTGAGAGAGTCATGAACACGCCACCGACTTCTCGTGTCGCATCTTTTGGTCA 61
Query 261 GACGGAGATTAACTGGGACAAACTTGACAAAAGGAGGTTCTACATTAATGGAGCTGGCCT 320
||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||
Sbjct 62 GACGGAGATTAACTGGGACAAACTTGACAAAAGGAGGTTTTACGTTGTTGGAGCTGGCCT 121
Query 321 CTTCACTGGTGTTACAGTAGCTCTGTATCCTGTATCCGTTGTGAAAACAAGGCTTCAAGT 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 CTTCACTGGTGTTACAGTAGCTCTGTATCCTGTATCCGTTGTGAAAACAAGGCTTCAAGT 181
Query 381 TGCTTCTAAAGAGATTGCTGAGAGAAGTGCCTTTTCTGTAGTTAAAGGAATTTTAAAGAA 440
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 182 TGCTTCTAAAGAGATTGCTGAGAGAAGTGCCTTTTCTGTAGTTAAAGGAATCTTAAAGAA 241
Query 441 TGATGGTGTTCCTGGTCTGTACCGAGGTTTTGGTACTGTCATTACAGGTGCTGTACCTGC 500
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 242 TGATGGTGTTCCTGGTCTGTACCGAGGCTTTGGTACTGTCATTACAGGTGCAGTACCTGC 301
Query 501 AAGAATCATATTTCTAACTGCTCTTGAGACCACTAAGATTTCTGCTTTTAAGTTGGTTGC 560
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 302 AAGGATTATATTTCTAACTGCTCTTGAGACCACAAAGATTTCTGCTTTTAAGTTGGTTGC 361
Query 561 ACCTTTGGAGTTAAGTGAACCTACACAAGCCGCCATTGCAAATGGAATTGCTGGCATGAC 620
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 362 ACCTTTGGAGCTAAGTGAACCTACACAAGCCGCCATTGCAAATGGAATTGCCGGCATGAC 421
Query 621 AGCATCTCTTTTCTCACAGGCTGTGTTTGTCCCAATTGATGTTGTTAGCCAAAAGTTGAT 680
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 422 AGCATCGCTTTTCTCACAGGCTGTTTTTGTCCCAATTGATGTTGTTAGCCAAAAGTTGAT 481
Query 681 GGTACAAGGATACTCAGGTCATGCTACATATACTGGTGGTATCGATGTTGCCACAAAAAT 740
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 482 GGTACAAGGATACTCAGGGCATGCTACATATACTGGTGGTATCGATGTCGCCACAAAAAT 541
Query 741 CATTAAGTCATATGGTGTAAGGGGATTATACAGAGGGTTTGGTCTGTCTGTTATGACCTA 800
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 542 CATTAAGTCATATGGCGTAAGGGGCTTATACAGAGGGTTTGGTCTGTCTGTTATGACCTA 601
Query 801 TTCTCCTTCAAGTGCCGCTTGGTGGGCTAGCTATGGATCAAGCCAACGTGTTATCTGGAG 860
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 602 TTCTCCTTCAAGTGCTGCTTGGTGGGCTAGCTACGGATCAAGCCAACGTGTTATCTGGAG 661
Query 861 ATTCTTAGGTTATGGTGGTGACTCGGATGCAACTGCTGCTCCTAGTAAGTCAAAAATTGT 920
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 ATTCTTAGGTCATGGTGGTGACTCGGATGCAACTGCTGCTCCTAGTAAGTCAAAAATTGT 721
Query 921 TATGGTCCAGGCTGCTGGAGGAATTATTGCTGGTGCAACAGCATCCTCAATTACAACACC 980
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 TCTGGTCCAGGCTGCTGGAGGAATTATTGCTGGTGCAACAGCATCCTCAATTACAACACC 781
Query 981 ATTAGACACAATCAAAACGCGACTGCAGGTCATGGGACATCAAGAAAATAGACCTTCAGC 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 ATTAGACACAATCAAAACGCGACTGCAGGTCATGGGACATCAAGAAAATAGACCTTCAGC 841
Query 1041 GAAACAAGTGGTGAAAAAACTGCTAGCAGAAGATGGCTGGAAAGGATTCTATAGGGGTTT 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 GAAACAAGTGGTGAAAAAACTGCTAGCAGAAGATGGCTGGAAAGGATTCTATAGGGGTTT 901
Query 1101 GGGCCCAAGATTCTTTAGCATGTCGGCTTGGGGAACCTCGATGATATTGACTTACGAATA 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 GGGCCCAAGATTCTTTAGCATGTCGGCTTGGGGAACCTCGATGATATTGACTTACGAATA 961
Query 1161 CTTAAAGCGTCTGTGTGCAATAGAAGATTAGAAAGCTTCACTACTGTTCGT 1211
|||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 962 CTTAAAGCGTCTGTGTGCAATAGAAGATTAGAAAGCCTCACTACTGTTCGT 1012
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58201894360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5