BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G15650.1 Length=1530 Score E Sequences producing significant alignments: (Bits) Value Ahg488410 jgi|Araly1|488410|fgenesh2_kg.6__1544__AT5G15650.1 2409 0.0 Ahg477458 jgi|Araly1|477458|fgenesh2_kg.3__159__AT3G02230.1 1314 0.0 Ahg317692 jgi|Araly1|317692|fgenesh1_pm.C_scaffold_3000708 333 2e-90 Ahg926029 jgi|Araly1|926029|scaffold_201590.1 156 5e-37 Ahg942013 jgi|Araly1|942013|scaffold_602557.1 137 2e-31 > Ahg488410 jgi|Araly1|488410|fgenesh2_kg.6__1544__AT5G15650.1 Length=1476 Score = 2409 bits (1304), Expect = 0.0 Identities = 1425/1482 (96%), Gaps = 13/1482 (1%) Strand=Plus/Plus Query 1 AAAACTCACCGACGCGATCCGATCTCATCTCTCTCATTTCGAAACCATGGTTGAGCCGGC 60 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAATCTCACCGACGCGATCCGATCTCATCTCTCTCATTTCGAAACCATGGTTGAGCCGGC 60 Query 61 GAATACTGTTGGTCTTCCGGTGAACCCGACTCCGTTGCTGAAAGATGAGCTCGATATCGT 120 ||||||||||||||| |||||||| ||||| || |||||||||||||||||||||||||| Sbjct 61 GAATACTGTTGGTCTCCCGGTGAATCCGACGCCCTTGCTGAAAGATGAGCTCGATATCGT 120 Query 121 GATTCCGACTATCAGAAACCTCGATTTCCTCGAGATGTGGAGGCCTTTTCTTCAGCCTTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GATTCCGACTATCAGAAACCTCGATTTCCTCGAGATGTGGAGGCCTTTTCTTCAGCCTTA 180 Query 181 CCATCTGATCATCGTCCAGGACGGAGATCCATCGAAGAAGATCCATGTCCCTGAAGGTTA 240 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 181 CCATCTGATCATCGTCCAGGACGGAGATCCGTCGAAGAAGATCCATGTCCCTGAAGGTTA 240 Query 241 CGACTACGAGCTCTACAACAGGAACGACATTAACCGAATCCTCGGACCTAAGGCTTCTTG 300 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct 241 CGACTACGAGCTCTACAACAGGAACGACATTAACCGGATCCTTGGACCTAAAGCTTCTTG 300 Query 301 TATCTCGTTTAAGGATTCTGCTTGTCGATGCTTTGGGTACATGGTGTCTAAGAAGAAGTA 360 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 301 TATCTCCTTTAAGGATTCTGCTTGTCGGTGCTTTGGGTACATGGTGTCTAAGAAGAAGTA 360 Query 361 TATCTTCACCATTGATGACGATTGCTTCGTTGCCAAGGATCCATCAGGCAAAGCAGTGAA 420 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 361 TATCTTCACCATTGATGACGATTGCTTCGTTGCCAAGGATCCATCTGGCAAAGCAGTTAA 420 Query 421 CGCTCTTGAGCAACACATCAAGAACCTTCTCTGCCCATCGTCTCCCTTTTTCTTCAACAC 480 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TGCTCTTGAGCAACACATCAAGAACCTTCTCTGCCCATCGTCTCCCTTTTTCTTCAACAC 480 Query 481 CTTGTATGATCCTTACCGTGAAGGTGCTGATTTCGTCCGTGGATACCCTTTCAGTCTCCG 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CTTGTATGATCCTTACCGTGAAGGTGCTGATTTCGTCCGTGGATACCCTTTCAGTCTCCG 540 Query 541 TGAAGGTGTTTCCACTGCTGTTTCCCATGGTCTTTGGCTCAACATCCCTGACTACGATGC 600 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 541 TGAAGGTGTTTCCACTGCTGTTTCCCATGGTCTCTGGCTCAACATCCCTGACTACGATGC 600 Query 601 CCCGACCCAACTCGTGAAGCCTAAGGAGAGGAACACCAGGTATGTGGATGCTGTCATGAC 660 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CCCTACCCAACTCGTGAAGCCTAAGGAGAGGAACACCAGGTATGTGGATGCTGTCATGAC 660 Query 661 CATCCCAAAGGGAACACTTTTCCCAATGTGTGGTATGAACTTGGCTTTTGACCGTGATTT 720 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 661 CATCCCAAAGGGAACACTTTTCCCAATGTGTGGTATGAACTTGGCTTTCGACCGTGATTT 720 Query 721 GATTGGCCCGGCTATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTCGTTACGA 780 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 721 GATTGGCCCAGCTATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTCGCTACGA 780 Query 781 CGATATGTGGGCTGGTTGGTGCATCAAGGTGATCTGTGACCACTTGAGCTTGGGAGTGAA 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 CGATATGTGGGCTGGTTGGTGCATCAAGGTGATCTGTGACCACTTGAGCTTGGGAGTGAA 840 Query 841 GACCGGTTTACCGTATATCTACCACAGCAAAGCGAGCAACCCTTTTGTTAACCTGAAGAA 900 ||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 841 GACCGGTTTGCCGTATATCTACCACAGCAAAGCGAGCAACCCTTTTGTGAACTTGAAGAA 900 Query 901 GGAATACAAGGGAATCTTCTGGCAGGAGGAGATCATTCCGTTCTTCCAGAACGCAAAGCT 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 GGAATACAAGGGAATCTTCTGGCAGGAGGAGATCATTCCGTTCTTCCAGAACGCAAAGCT 960 Query 961 ATCGAAAGAAGCAGTAACTGTTCAGCAATGCTACATTGAGCTCTCAAAGATGGTCAAGGA 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 961 ATCGAAAGAAGCAGTAACTGTTCAGCAATGCTACATTGAGCTCTCAAAGATGGTGAAGGA 1020 Query 1021 GAAGTTGAGCTCCTTAGACCCGTACTTTGACAAGCTTGCAGATGCCATGGTTACATGGAT 1080 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1021 GAAGTTGAGCTCCTTAGACCCGTACTTTGACAAGCTTGCAGACGCCATGGTTACATGGAT 1080 Query 1081 TGAAGCTTGGGATGAGCTTAACCCACCAGCAGCCAGTGGCAAAGCTTGAGAGCAGTATGA 1140 ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 1081 TGAAGCTTGGGATGAGCTTAACCCACCAGCAGCCAATGGCAAAGCTTGAG--CAGTATGA 1138 Query 1141 GCCAAAAA--GAAAAAG-CCACCAAAGTTTTGGTTATTTTTAGCTCAAATTATCGTTACT 1197 |||||||| |||||| |||||| ||||||||||||||| ||||||||||||| ||||| Sbjct 1139 GCCAAAAAAAGAAAAAAACCACCACAGTTTTGGTTATTTT-AGCTCAAATTATCTTTACT 1197 Query 1198 TTTAAATTTCTGATTTTACGAACCTTTCTTGCtttttttACACATTTGAGTAGTTTT-CA 1256 |||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| || Sbjct 1198 TTTAAATTTCGGATTTTATGAACCTTTCTTGCTTTTTT-ACACATTTGAGTAGTTTTTCA 1256 Query 1257 TCATCAGTACTTTCTCATTGTCCGGTTATGGTTTTTGCATTTGGTTTAAATATCACCGGT 1316 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 1257 TCATCAGTACTTTCTCATTGTCCGATTATGGTTCTTGCATTTGGTTTAAATATCACCGGT 1316 Query 1317 TTATTTATAAACAGTGGTGGATTAGTAGTACTATTTTCTGAGtttttttCTTTGTTTCAT 1376 ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| Sbjct 1317 TTATTTATAAACAGTGGTGGATTTGTAGTACTATTTTCTGAGCTTTTTTCTTTGTTTCAT 1376 Query 1377 TAATAAAAAGGCCTTTTCATAGGTGTTTGCAATTAGt-ttttt--tCCCCCATTAATCAT 1433 ||||||||| | |||| |||| ||| ||||||||||| ||||| | || ||||||||| Sbjct 1377 TAATAAAAAAGTCTTT-CATAAGTGATTGCAATTAGTATTTTTGGTTTCC-ATTAATCAT 1434 Query 1434 CGATTATCATAGGTATGTTATGGCTTTAAATGGTATAAGGAA 1475 | ||||||||||||||||| |||| |||| |||||||||||| Sbjct 1435 CCATTATCATAGGTATGTTTTGGCATTAAGTGGTATAAGGAA 1476 > Ahg477458 jgi|Araly1|477458|fgenesh2_kg.3__159__AT3G02230.1 Length=1381 Score = 1314 bits (711), Expect = 0.0 Identities = 950/1067 (89%), Gaps = 10/1067 (1%) Strand=Plus/Plus Query 46 CATGGTTGAGCCGGCGAATACTGTTGGTCTTCCGGTGAA-CCCGACTCCGTTGCTGAAAG 104 ||||||||||||||||||||| ||||| |||||||||| | | | ||| ||| |||| | Sbjct 66 CATGGTTGAGCCGGCGAATACCGTTGGAATTCCGGTGAATCAC-ATTCCATTGTTGAAGG 124 Query 105 ATGAGCTCGATATCGTGATTCCGACTATCAGAAACCTCGATTTCCTCGAGATGTGGAGGC 164 ||||||||||||||||||| || || ||| | |||||||||||||| ||||||||||||| Sbjct 125 ATGAGCTCGATATCGTGATCCCCACGATCCGTAACCTCGATTTCCTGGAGATGTGGAGGC 184 Query 165 CTTTTCTTCAGCCTTACCATCTGATCATCGTCCAGGACGGAGATCCATCGAAGAAGA-TC 223 ||||||||||||||||||||||||| |||||||| || |||||||||||||||| | | Sbjct 185 CTTTTCTTCAGCCTTACCATCTGATTATCGTCCAAGATGGAGATCCATCGAAGACCATTG 244 Query 224 CATGTCCCTGAA-GGTTACGACTACGAGCTCTACAACAGGAACGACATTAACCGAATCCT 282 | |||||||||| |||| ||| ||||| |||||||||||||||||||| ||||| ||||| Sbjct 245 C-TGTCCCTGAAGGGTT-CGATTACGAACTCTACAACAGGAACGACATCAACCGTATCCT 302 Query 283 CGGACCTAAGGCTTCTTGTATCTCGTTTAAGGATTCTGCTTGTCGATGCTTTGGGTACAT 342 || ||||| ||||| || || || || ||||| ||||||||||| ||||| || ||||| Sbjct 303 TGGTCCTAAAGCTTCCTGCATTTCCTTCAAGGACTCTGCTTGTCGTTGCTTCGGCTACAT 362 Query 343 GGTGTCTAAGAAGAAGTATATCTTCACCATTGATGACGATTGCTTCGTTGCCAAGGATCC 402 ||| || ||||||||||| |||||||| ||||| |||||||||||||||||||||||||| Sbjct 363 GGTCTCCAAGAAGAAGTACATCTTCACTATTGACGACGATTGCTTCGTTGCCAAGGATCC 422 Query 403 ATCAGGCAAAGCAGTGAACGCTCTTGAGCAACACATCAAGAACCTTCTCTGCCCATCGTC 462 ||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 423 ATCTGGAAAAGCTGTGAACGCTCTTGAGCAACACATCAAGAACCTTCTCTGCCCATCAAC 482 Query 463 TCCCTTTTTCTTCAACACCTTGTATGATCCTTACCGTGAAGGTGCTGATTTCGTCCGTGG 522 ||| |||||||||||||||||||| || || ||||||||||||||||| ||||||||||| Sbjct 483 TCCATTTTTCTTCAACACCTTGTACGACCCATACCGTGAAGGTGCTGACTTCGTCCGTGG 542 Query 523 ATACCCTTTCAGTCTCCGTGAAGGTGTTTCCACTGCTGTTTCCCATGGTCTTTGGCTCAA 582 ||||||||||||||||||||| ||||||||||| |||||||| || ||||| |||||||| Sbjct 543 ATACCCTTTCAGTCTCCGTGAGGGTGTTTCCACCGCTGTTTCTCACGGTCTGTGGCTCAA 602 Query 583 CATCCCTGACTACGATGCCCCGACCCAACTCGTGAAGCCTAAGGAGAGGAACACCAGGTA 642 ||||||||| ||||||||||| |||||||| |||||||||||||| |||||||| ||||| Sbjct 603 CATCCCTGATTACGATGCCCCTACCCAACTTGTGAAGCCTAAGGAAAGGAACACAAGGTA 662 Query 643 TGTGGATGCTGTCATGACCATCCCAAAGGGAACACTTTTCCCAATGTGTGGTATGAACTT 702 |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| Sbjct 663 TGTGGATGCTGTCATGACCATCCCAAAGGGAACACTCTTCCCTATGTGTGGCATGAACTT 722 Query 703 GGCTTTTGACCGTGATTTGATTGGCCCGGCTATGTACTTTGGTCTCATGGGTGATGGTCA 762 ||| ||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| Sbjct 723 GGCCTTTGACCGTGAGCTCATTGGTCCGGCTATGTACTTTGGTCTCATGGGTGATGGTCA 782 Query 763 GCCTATTGGTCGTTACGACGATATGTGGGCTGGTTGGTGCATCAAGGTGATCTGTGACCA 822 |||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 783 GCCTATTGGTCGCTACGACGATATGTGGGCTGGATGGTGTATCAAGGTGATCTGTGACCA 842 Query 823 CTTGAGCTTGGGAGTGAAGACCGGTTTACCGTATATCTACCACAGCAAAGCGAGCAACCC 882 ||| | |||||||||||||| ||||| || || || |||||||||||||| || ||||| Sbjct 843 TTTGGGATTGGGAGTGAAGACAGGTTTGCCCTACATTTACCACAGCAAAGCCAGTAACCC 902 Query 883 TTTTGTTAACCTGAAGAAGGAATACAAGGGAATCTTCTGGCAGGAGGAGATCATTCCGTT 942 ||||| ||| |||||||||| |||||||||||||||||||||||||| |||||||| || Sbjct 903 GTTTGTGAACTTGAAGAAGGAGTACAAGGGAATCTTCTGGCAGGAGGATATCATTCCTTT 962 Query 943 CTTCCAGAACGCAAAGCT-ATCGAAAGAAGCAGTAACTGTTCAGCAATGCTACATTGAGC 1001 |||||||| ||||||||| | |||||||||| || || ||||| ||||||||||| |||| Sbjct 963 CTTCCAGAGCGCAAAGCTCA-CGAAAGAAGCTGTGACAGTTCAACAATGCTACATGGAGC 1021 Query 1002 TCTCAAAGATGGTCAAGGAGAAGTTGAGCTCC-TTAGACCCGTACTTTGACAAGCTTGCA 1060 | || ||| |||| ||||||||| | ||| || || || || |||||||||||||||||| Sbjct 1022 TGTCCAAGTTGGTGAAGGAGAAGCTAAGCCCCATT-GATCCTTACTTTGACAAGCTTGCA 1080 Query 1061 GATGCCATGGTTACATGGATTGAAGCTTGGGATGAGCTTAACCCACC 1107 || || ||||| || |||||||||||||||||||||||||||||||| Sbjct 1081 GACGCTATGGTCACCTGGATTGAAGCTTGGGATGAGCTTAACCCACC 1127 > Ahg317692 jgi|Araly1|317692|fgenesh1_pm.C_scaffold_3000708 Length=1125 Score = 333 bits (180), Expect = 2e-90 Identities = 443/566 (78%), Gaps = 33/566 (6%) Strand=Plus/Plus Query 73 TCTTCCGGTG-AACCCGACTCCGTTGCTGAAAGATGAGCTCGATATCGTGATTCCGACTA 131 |||||| ||| ||||| || || || ||||||||||||| || || ||||| || || | Sbjct 16 TCTTCC-GTGAAACCC-ACGCCAATGTTGAAAGATGAGCTAGACATTGTGATACCCACCA 73 Query 132 -TCAGAAACCTCGATTTCC-TCGAGATGTGGAG-GCCTTTTCTTCAGCCTTACCATCTGA 188 || ||||||| || |||| || |||||||| | |||| | || | | |||||||||| Sbjct 74 TTC-GAAACCTTGACTTCCTTC-AGATGTGGCGACCCTTCT-TTGAACAGTACCATCTGA 130 Query 189 TCATCGTCCAGGACGGAGATCCATCGAAGAAG--ATC--CATGTCCCTGAAGGTTACGAC 244 |||| || || || || ||||| ||| | ||| ||| ||| | || ||||||| |||| Sbjct 131 TCATTGTTCAAGATGGTGATCCTTCG-A-AAGTCATCAACAT-T-CCAGAAGGTTTCGAC 186 Query 245 TACGAGCTCTACAACAGGAACGACATTAACCGAATCCTCGGACCTAAGGCTTCTTGTATC 304 |||||||||||||||||||||||||| || |||||| | || || ||||| ||||| || Sbjct 187 TACGAGCTCTACAACAGGAACGACATCAATCGAATCTTGGGTCCCAAGGCCTCTTGCATT 246 Query 305 TCGTTTAAGGATTCTGCTTGTCGATGCTTTGGGTACATGGTGTCTAAGAAGAAGTATATC 364 || || ||||| |||||||| || ||||| || |||||||| || || |||||||| ||| Sbjct 247 TCCTTCAAGGACTCTGCTTGCCGTTGCTTCGGTTACATGGTCTCCAAAAAGAAGTACATC 306 Query 365 TTCACCATTGATGACGATTGCTTCGTTGCCAAGGATCCATCAGGCAAAGCAG-TGAACGC 423 | |||||||||||| |||||||| ||||| ||||||||| | || |||| || | || || Sbjct 307 TACACCATTGATGATGATTGCTTTGTTGCAAAGGATCCAACTGGGAAAG-AGATCAATGC 365 Query 424 TCTTGAGCAACACATCAAGAACCT-TC-TCTGCCCATCGTCTCC-CTTTTTCTTCAACAC 480 |||||||| || ||||||||||| | ||| || ||| | || | ||| ||| ||||| Sbjct 366 GCTTGAGCAGCATATCAAGAACCTCTTATCT-CC-ATCAACCCCGCATTT-CTTTAACAC 422 Query 481 -CTTGTATGATCCTTACCGTGAAGGTGCTGA-TTTCGTCCGTGGATACCCTTTCAGTCTC 538 ||| |||||||| ||| | || || || || ||| || |||||||||||||| ||| | Sbjct 423 ACTT-TATGATCCATACAGAGATGGGGCAGACTTT-GTTCGTGGATACCCTTTTAGTATG 480 Query 539 CGTGAAGGTGTT-TCCACTGCTGTTTCCCATGGTCTTTGGCTCAACATCCCTGACTACGA 597 || |||||| | ||||| || || ||||| || ||||||||||| |||||||| || Sbjct 481 CGCAAAGGTGCCATA-ACTGCGGTATCTCATGGCCTCTGGCTCAACATTCCTGACTATGA 539 Query 598 TGC-CCCGACCCAACTCGTGAAGCCT 622 ||| ||| || || || ||||||||| Sbjct 540 TGCTCCC-ACTCAGCTTGTGAAGCCT 564 > Ahg926029 jgi|Araly1|926029|scaffold_201590.1 Length=341 Score = 156 bits (84), Expect = 5e-37 Identities = 90/93 (97%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 716 GATTTGATTGGCCCGGCTATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTCGT 775 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 159 GATTTGATTGGCCCAGCTATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTCGC 218 Query 776 TACGACGATATGTGGGCTGGTTGGTGCATCAAG 808 |||||||| |||||||||||||||||||||||| Sbjct 219 TACGACGACATGTGGGCTGGTTGGTGCATCAAG 251 Score = 110 bits (59), Expect = 4e-23 Identities = 69/73 (95%), Gaps = 3/73 (4%) Strand=Plus/Plus Query 1083 AAGCTTGGGATGAGCTTAACCCACCAGCAGCCAGTGGCAAAGCTTGAGAGCAGTA-TGAG 1141 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| Sbjct 267 AAGCTTGGGATGAGCTTAACCCACCAGCAGCCAATGGCAAAGCTTGAG--CAGTAATGAG 324 Query 1142 CCAAAAAGAAAAA 1154 ||||||||||||| Sbjct 325 CCAAAAAGAAAAA 337 > Ahg942013 jgi|Araly1|942013|scaffold_602557.1 Length=421 Score = 137 bits (74), Expect = 2e-31 Identities = 88/95 (93%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 716 GATTTGATTGGCCCGGCTATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTCGT 775 |||||||||||||| | ||||||||||||||||||||||||||||||||||||||| | Sbjct 252 GATTTGATTGGCCCAACAATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTAGC 311 Query 776 TACGACGATATGTGGGCTGGTTGGTGCATCAAGGT 810 ||||| || |||||||||||||||||||||||||| Sbjct 312 TACGATGACATGTGGGCTGGTTGGTGCATCAAGGT 346 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57287728480 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5