BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15760.1
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488420 jgi|Araly1|488420|fgenesh2_kg.6__1554__AT5G15760.1 902 0.0
> Ahg488420 jgi|Araly1|488420|fgenesh2_kg.6__1554__AT5G15760.1
Length=621
Score = 902 bits (488), Expect = 0.0
Identities = 578/622 (93%), Gaps = 4/622 (1%)
Strand=Plus/Plus
Query 18 GCTCGCTTAGAAGCTTCAAACGC---AGCTGAAATGGCGGTTCAAGCAAATCAGAGTGCT 74
||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1 GCTCGCTAAGAAGCTTCAAACGCTTTAGCTGAAATGGCGGTTCAATCAAATCAGAGTGCT 60
Query 75 TCTTTTGGGTTCAGAACAGCTTCACCTTCTCAGAAGCTCTCTTCGAAACCCATAGCTCAT 134
||||||||||||||||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 61 TCTTTTGGGTTCAGAACAGCTTCACCTTCTCAGAAGCTCTCTTCGAAACATGTTGTTTAT 120
Query 135 ATCTCTCTATCGACGAAGCTCAAACCCTCTTCTCGACCATCGCTTTCGTGCTCTACTTGG 194
|| || || | |||||||||||| |||||||| | | ||| | |||||||||||||||
Sbjct 121 ATTTCGCTGGCAACGAAGCTCAAATACTCTTCTCTAGCGTCGATCTCGTGCTCTACTTGG 180
Query 195 AATCAGGGTCAAATTCCGGCGAGACACTCCTGTATCAATCCCGGAATATTCGCATATCCC 254
|||| |||||||||||| ||||||||||| ||| ||||||||||||||||||| | ||
Sbjct 181 AATCCTGGTCAAATTCCGACGAGACACTCCGGTAAAAATCCCGGAATATTCGCATCTGCC 240
Query 255 CCCTCCAATCTTACCTTCTCTCATGAACTACCAGAATCTGAATCTCCGCCACTTGGAAAG 314
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 241 CCCTCCAATCTTACCTTCTCTCATGAACCACCAGAATCTGTATCTCCGCCACTTGGAAAG 300
Query 315 AAGAAGATGCGTGTGTTAGTGAAGCCGCTAGAGAAACCAAAGGTGGTACTGAAGTTTGTA 374
||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 301 AAGAAGATGCGGGTGTTAGTGAAGCCGCTGGAGAAACCAAAGGTGGTACTAAAGTTTGTG 360
Query 375 TGGATGCAAAAGGACATAGGAGTTGCATTAGACCATATGATTCCAGGATTTGGAACAATC 434
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 361 TGGATGCAAAAGGACATAGGAGTTGCGTTAGACCATATGATTCCAGGGTTTGGAACAATC 420
Query 435 CCACTTAGTCCATACTACTTCTGGCCTAGGAAAGATGCTTGGGAAGAGCTCAAAACTTTG 494
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 CCACTTAGTCCATACTACTTCTGGCCTAGGAAAGATGCTTGGGAAGAGCTCAAAGCTTTG 480
Query 495 TTAGAGAGCAAGCCTTGGATCTCTGAGCTTCATCGTGTCTTCCTCCTTAACCAAGCTACA 554
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 TTAGAGAGCAAGCCTTGGATCTCTGAGCTTCATCGCGTCTTCCTCCTTAACCAAGCTACA 540
Query 555 GACATCATCAATCTTTGGCAATCAAGCGGTGGAGATTTGTCTTGATTTGGATTCACCAGA 614
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 541 GACATCATCAATCTTTGGCAATCAAGTGGTGGAGATTTGTCTTGATT-GGATTCACCAGA 599
Query 615 TATATCTGTTTATCATAGGTAT 636
|||||||||||||||||||||
Sbjct 600 CATATCTGTTTATCATAGGTAT 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27524746074
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5