BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G15780.1 Length=1483 Score E Sequences producing significant alignments: (Bits) Value Ahg488422 jgi|Araly1|488422|fgenesh2_kg.6__1556__AT5G15780.1 1489 0.0 > Ahg488422 jgi|Araly1|488422|fgenesh2_kg.6__1556__AT5G15780.1 Length=1319 Score = 1489 bits (806), Expect = 0.0 Identities = 966/1039 (93%), Gaps = 27/1039 (3%) Strand=Plus/Plus Query 2 TCTTTTAACAATCTCTTCGTTTTTCGTGGCTCACTCATCTTCACACCACACTCCTATATA 61 ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 1 TCTTTTAACAATCTCTTTGTTTTTCCTGGCTCACTCATCTTCACACCACACTCCTATATA 60 Query 62 TATACCCCCTCTTTCCTC---CGATAGTGAGAGATAGAGTCGATAATTATGGAGAGAATA 118 ||| |||||||||||| |||||||||||||||||||||||| ||||||||||| | Sbjct 61 TAT---CCCTCTTTCCTCGATAGATAGTGAGAGATAGAGTCGATAACTATGGAGAGAACA 117 Query 119 ACGACCTTATGGTTTTGGTTTAGTCTTATGATTTTCTTAGGAATCTCTATCAATGGAGGT 178 || | ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 118 ACCAACTTATGGGTTTGGTTTAGTCTTATGATTTTCTTAGGAATCTCTATTAATGGAGGT 177 Query 179 -TTGTCTCAAGGACAGCAACATGTTATGAAGAAGACACGTTCTTCTGCAGTTGTAGTAGG 237 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 178 CTT-TCTCAAGGACAGCAACATGTTATGAAGAAGACACGTTCTTCTGCAGTTGTAGTCGG 236 Query 238 AACTGTCTACTGTGACACTTGTTTTAACGGCGCCTTCTCGAAATCACCCAACCACTTAAT 297 |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct 237 AACTGTCTACTGTGACACTTGTTTTAACGGTGCCTTCTCGAAATCACACAACCACTTAAT 296 Query 298 CTCAGGTGCTTTAGTTGCAGTGGAATGCATTGACGAGAACTCGAAACCGAGTTTCAGACA 357 | |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 297 CCCAGGTGCTTTAGTTGCTGTGGAATGCATTGACGAGAACTCGAAACCGAGTTTTAGACA 356 Query 358 AGAAGTGAAAACAGACAAGCGCGGCGAATTCAAAGTGAAGCTACCATTCTCTGTGAGCAA 417 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 AGAGGTGAAAACAGACAAGCGCGGCGAATTCAAAGTGAAGCTACCATTCTCTGTGAGCAA 416 Query 418 ACATGTGAAGAAGATCAAGAGATGCTCTGTGAAGTTGCTAAGTAGCTCACAGCCTTACTG 477 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 417 ACATGTGAAGAAGATCAAGAGATGCTCTGTGAAGTTGCTAAGTAGCTCACAACCTTACTG 476 Query 478 TTCTATAGCTTCGTCTGCTACTTCTTCTTCTCTCAAACGCCTTAAATCAAACCATCATGG 537 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 TTCTATAGCTTCGTCCGCTACTTCTTCTTCTCTCAAACGCCTTAAATCAAACCATCATGG 536 Query 538 AGAGAATACTAGGGTTTTCTCTGCAGGGTTCTTCACTTTCAGACCCGAAAACCAACCAGA 597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 AGAGAATACTAGGGTTTTCTCTGCAGGGTTCTTCACTTTCAGACCCGAAAACCAACCAGA 596 Query 598 GATTTGTAGCCAAAAACCTATCAATCTCCGCG-GTTCCAAGCCTCTTTTACCGGATCCTT 656 |||||||||||||||||| |||||||||| || || |||||||||||||||||||||||| Sbjct 597 GATTTGTAGCCAAAAACCAATCAATCTCCCCGCGT-CCAAGCCTCTTTTACCGGATCCTT 655 Query 657 CATTtcctccaccgctccaagatcctcctaatccttcccctctcccaaatctccctatcg 716 |||| |||| |||| |||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 656 CATTCCCTCAACCGATCCAAGATCCTCCTAATCCTTCCCCTATCCCAAATCTCCCCATCG 715 Query 717 ttcctcctCTTCCAAACTTACCTGTTCCAAAGTTACCTGTTCCGGACTTACCTCTTCCTC 776 ||||||| ||||| ||||| | || | | | | |||||||||||| |||||| Sbjct 716 TTCCTCCCCTTCCGAACTT----G--CC----T--C-T-T-CCGGACTTACCTATTCCTC 760 Query 777 TAG-TTCCTCCTCTTCTTCCACCAGGACCTCAGAAATCAGCTTCCTTGCATAACAAGAAA 835 || |||||||||||||||| |||||||| ||||||||| ||||| |||||||||||||| Sbjct 761 -AGGTTCCTCCTCTTCTTCCCCCAGGACCACAGAAATCATCTTCCGTGCATAACAAGAAA 819 Query 836 TCTGATTCCTTGAAAGACAAGAAAACCGAAGCACTAAAACCCAATTTCTTCTTTCCGCCA 895 ||||||||||| |||||||||||| | |||| |||||||||| ||||||||||||||||| Sbjct 820 TCTGATTCCTTTAAAGACAAGAAAGCTGAAGTACTAAAACCCGATTTCTTCTTTCCGCCA 879 Query 896 AACCCGTTAAACCCGCCATCTATCATCCCTCCAAACCCGCTCATTCCTTCTATCCCAACC 955 |||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct 880 AACCCGTTAAACCCGCCATCTATCATCCCTCCGAACCCTCTGATTCCTTCTATCCCAACC 939 Query 956 CCTACTCTCCCTCCAAACCCGCTTATtccttctcccccaagtctccctccaatcccacta 1015 || |||||||||||||||||| | |||||||||||||||| |||||||||||||||| || Sbjct 940 CCAACTCTCCCTCCAAACCCGGTCATTCCTTCTCCCCCAACTCTCCCTCCAATCCCATTA 999 Query 1016 atccctactcccccaactc 1034 |||||| |||||||||||| Sbjct 1000 ATCCCTTCTCCCCCAACTC 1018 Score = 270 bits (146), Expect = 2e-71 Identities = 182/198 (92%), Gaps = 7/198 (4%) Strand=Plus/Plus Query 1242 tccctccggcccctctcatcccgggaatccctcctcTTTCACCTTCCTTTTCTAGTCACC 1301 |||||||| |||||||||||| ||||||||||| || ||||||||||||||||||||| Sbjct 1127 TCCCTCCGATCCCTCTCATCCCTGGAATCCCTCCGGTTACACCTTCCTTTTCTAGTCACC 1186 Query 1302 ATCAACCCTAA-ATTAGCAATCCTTTCCTTACATTTCCAATTATGTAATCTATATGTATC 1360 ||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1187 ATCAACCTTAACTTTAGCAATCCTTTCCTCACATTTCCAATTATGTAATCTATATGTATC 1246 Query 1361 ATCC-GCTTTAAATTGTTACTTTTTTCCTCTGCATTTTCACTTGTTGGCTTGTTGTCATT 1419 |||| | ||||||||| | |||||||||||||||||||||||||||||||||||| ||| Sbjct 1247 ATCCTG-TTTAAATTG-T--TTTTTTCCTCTGCATTTTCACTTGTTGGCTTGTTGT-ATT 1301 Query 1420 TCAATAAATATTGTTTAC 1437 |||||||||||||||||| Sbjct 1302 TCAATAAATATTGTTTAC 1319 Score = 237 bits (128), Expect = 2e-61 Identities = 225/269 (84%), Gaps = 17/269 (6%) Strand=Plus/Plus Query 963 TCCCTCCAAACCCGCTTATtccttc--t--c--ccccaagtctccctccaatcccactaa 1016 ||||||| ||||| || |||||||| | | |||||| ||||||||||| ||| | | Sbjct 905 TCCCTCCGAACCCTCTGATTCCTTCTATCCCAACCCCAACTCTCCCTCCAAACCCGGTCA 964 Query 1017 tccctactcccccaactctccctACAATTCCGTTACTTCCTACTCCCCCGACTCCTACTC 1076 | ||| ||||||||||||||||| |||| || ||| | ||| ||||||| ||||| |||| Sbjct 965 TTCCTTCTCCCCCAACTCTCCCTCCAATCCCATTAATCCCTTCTCCCCCAACTCCAACTC 1024 Query 1077 TGCCACCGATTCCAACAATTCCGACTCTTCCACCTCTTCCGGTTCTTCCACCTGTCCCTA 1136 ||||||||||||||||||||||||||||||| | | | ||| |||||||||||||| | Sbjct 1025 TGCCACCGATTCCAACAATTCCGACTCTTCCGC-T-T-CCG---CTTCCACCTGTCCCAA 1078 Query 1137 TCGTGAATCCGCCTTCACTACCGCCACCACCACCTTCTTTCCCTGTTCCGCTCCCTCCGG 1196 |||| ||||||||| |||||||||||||||| |||||||||||| |||||||||||| Sbjct 1079 TCGTAAATCCGCCTGCACTACCGCCACCACC---TTCTTTCCCTGTCCCGCTCCCTCCGA 1135 Query 1197 TCCCTGG-ACTCCCTGGCatccctccggt 1224 ||||| | ||||||| ||||||||||| Sbjct 1136 TCCCTCTCA-TCCCTGGAATCCCTCCGGT 1163 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55497486965 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5