BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G15830.1 Length=819 Score E Sequences producing significant alignments: (Bits) Value Ahg488428 jgi|Araly1|488428|fgenesh2_kg.6__1562__AT5G15830.1 1234 0.0 > Ahg488428 jgi|Araly1|488428|fgenesh2_kg.6__1562__AT5G15830.1 Length=818 Score = 1234 bits (668), Expect = 0.0 Identities = 777/827 (94%), Gaps = 17/827 (2%) Strand=Plus/Plus Query 1 ATTAAACTCACCCTCTTTGAGTTCTAAagagagagagagaAATTGACCATGCAGCCAAAT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATTAAACTCACCCTCTTTGAGTTCTAAAGAGAGAGAGAGAAATTGACCATGCAGCCAAAT 60 Query 61 TATGATAGCTCAAGTCTTaacaacatgcaacaacaagactacttcaacttgaacaactac 120 || |||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 61 TACGATAGCTCAAGTCTTAACAACATGCAACAACAAGACTACTTCCACTTGAAC---TAC 117 Query 121 tacaacaacttaaacccttcaaccaataacaacaacctcaaTATCCTCCAATACCCTCAA 180 ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 118 TACAACAACTTAAACCCTTCAACCAATAACAACAATCTCAATCTCCTCCAATACCCTCAA 177 Query 181 ATTCAAGAACTCAACCTACAATCTCCGGTAAGCAACAACTCCACAACTTCCGATGACGCA 240 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 178 ATTCAAGAACTCAACCTACAATCTCCGGTAAGCAACAACTCTACGACTTCCGATGACGCA 237 Query 241 ACTGAAGAAATCTTCGTCATCAACGAGAGGAAGCAAAGACGTATGGTATCTAACAGAGAG 300 || |||| |||||| |||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 238 ACAGAAGGAATCTTTGTCATCAATGAGAGGAAGCAACGACGTATGGTATCTAACAGAGAG 297 Query 301 TCAGCAAGAAGATCAAGAATGAGAAAGCAAAGACACTTAGATGAGCTTCTCTCACAGGTT 360 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 298 TCAGCAAGAAGATCAAGAATGAGAAAGCAAAGACACTTAGATGAGCTTCTTTCACAGGTT 357 Query 361 GCTTGGCTTCGAAGCGAGAACCACCAGCTTTTAGATAAGCTTAACCAAGTCTCCGACAAC 420 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 358 GCTTGGCTTCGAAGCGAGAACCACCAGCTTCTAGATAAGCTTAACCAAGTCTCCGACAAC 417 Query 421 AATGATCTTGTTATTCAAGAGAACTCGAGTCTTAAAGAAGAAAACTTGGAGCTTCGTCAG 480 ||||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||| Sbjct 418 AATGATCGTGTTATTCAAGAGAACTTGAGCCTTAAAGAGGAAAACTTGGAGCTTCGTCAA 477 Query 481 GTTATCACATCCATGAAGAAGCTTGGAGGAGGCATACATGACAAATATTCTTCTCCGTCG 540 |||||||||||| ||||||||||||||||||| || |||||||||||||||||| | || Sbjct 478 GTTATCACATCCGTGAAGAAGCTTGGAGGAGGGATTCATGACAAATATTCTTCTTCTTC- 536 Query 541 TCTATGGATGAATTGGATCAAGACTTTTCTTCTATCACAGATGATCCAAGAACTCATCAT 600 | ||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||| Sbjct 537 -C-ATGGATGAATTGGATCAAGACTTCTCTTCTATTACAGATGATCCAAGAACGCATCAT 594 Query 601 CCATCATGAGT--TG-TTCTGATCGAGAAAAACATTACTTCAAGTTTCTGCCTCTAATCT 657 ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 595 CCATCATGAGTACTTATTCTGATCGAGAAAAACATTACTTCAAGTTTCTGCCTCTAATCT 654 Query 658 TATCTATTTTCTTTCTTTGGTATCACTTTTTAAACCGTTTAACTACGTACCAAAGTTTGG 717 |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 655 -ATCTATTTTCTTTCTTTGGTATCACTTTTTTAACGGTTTAACTACGTACCAAAGTTTGG 713 Query 718 GTTTTATTTGTTTTTCTGTTGTTTTGTCAGAAGATAATTAAATGATGGATATTTGAAGAT 777 |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 714 GTTTTATTTGTTTTACTGTTGTTTTGTCAGATGATAATTAAATGATGGATATTTGAAGA- 772 Query 778 GATGCTGTAAACAAAGAT-TTAT-AATTAT---ATACATAAATTTGG 819 ||| |||||||||| || |||| |||||| |||||||||||||| Sbjct 773 GATACTGTAAACAA-GAACTTATTAATTATTCTATACATAAATTTGG 818 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30269596098 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5