BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15840.1
Length=1344
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488429 jgi|Araly1|488429|fgenesh2_kg.6__1563__AT5G15840.1 1962 0.0
> Ahg488429 jgi|Araly1|488429|fgenesh2_kg.6__1563__AT5G15840.1
Length=1339
Score = 1962 bits (1062), Expect = 0.0
Identities = 1259/1352 (93%), Gaps = 21/1352 (2%)
Strand=Plus/Plus
Query 1 ATTAGCCCCTTCTTTCAGATACCAGCTCCCACACCATCAAACTTACTACATCTGAGTTAT 60
|||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||
Sbjct 1 ATTAGCCCCTTCTTTCAGATACAATCTCCCACACCATCAAACTTACTACACCTGAGTTAT 60
Query 61 TATGTTGAAACAAGAGAGTAACGACATAGGTAGTGGAGAGAACAACAGGGCACGACCCTG 120
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||
Sbjct 61 TATGTTGAAACAAGAGAGTAACGACATTGGTAGTGAAGAGAACAACAGGGCACGAGCCTG 120
Query 121 TGACACATGCCGGTCAAACGCCTGCACCGTGTATTGCCATGCAGATTCTGCCTACTTGTG 180
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 121 TGACACATGCCGGTCAAACGCCTGCACCGTGTACTGCCATGCGGATTCTGCCTACTTGTG 180
Query 181 CATGAGCTGTGATGCTCAAGTTCACTCTGCCAATCGCGTTGCTTCCCGCCATAAACGTGT 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 181 CATGAGCTGTGATGCTCAAGTTCACTCTGCCAATCGTGTTGCTTCCCGCCATAAACGGGT 240
Query 241 CCGGGTCTGCGAGTCATGTGAGCGTGCTCCGGCTGCTTTTTTGTGTGAGGCAGATGATGC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCGGGTCTGCGAGTCATGTGAGCGTGCTCCGGCTGCTTTTTTGTGTGAGGCAGATGATGC 300
Query 301 CTCTCTATGCACAGCCTGTGATTCAGAGGTTCATTCTGCAAACCCACTTGCTAGACGCCA 360
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 301 ATCTCTATGCACAGCCTGTGATTCAGAGGTTCATTCTGCAAACCCACTTTCTAGACGCCA 360
Query 361 TCAGCGAGTTCCAATTCTACCAATTTCTGGAAACTCTTTCAGCTCCATGACCACTACTCA 420
||||||||||||||| || |||||||||||||||||||||||||||||| ||| | |||
Sbjct 361 TCAGCGAGTTCCAATCCTGCCAATTTCTGGAAACTCTTTCAGCTCCATGGCCA-T--TCA 417
Query 421 CCACCAAAGCGAGAAAACAATGACCGATCCAGAGAAGAGACTGGTGGTGGATCAAGAGGA 480
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 418 CCACCAAAGCGAGACAACAATGACCGATCCAGAGAAGAGACTGGTGGTGGATCAAGAGAA 477
Query 481 AGGTGAAGAAGGTGATAAGGATGCCAAGGAGGTTGCTTCGTGGCTGTTCCCTAATTCAGA 540
|||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||
Sbjct 478 AGGTGAAGAAGGTGATGAGGATGCCAAGGAGGTGGCTTCGTGGCTGTTCCCTAACTCAGA 537
Query 541 CAAAAATAACAATAACCAAAACAATGGGTTATTGTTTAGTGATGAGTATCTAAACCTTGT 600
|||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 538 CAAAAATATCAATAACCAGAACAATGGGTTATTGTTTAGTGATGAGTATCTAGACCTTGT 597
Query 601 GGATTACAACTCGAGTATGGACTACAAATTCACAGGTGAATAC-AGTCAACACCAACAAA 659
|||||||||||| |||||||||||||||||||||||| ||||| | ||||||||| ||||
Sbjct 598 GGATTACAACTCAAGTATGGACTACAAATTCACAGGTCAATACCA-TCAACACCAGCAAA 656
Query 660 ACTGCAGCGTACCACAGACGAGCTACGGGGGAGATAGAGTTGTTCCGCTTAAACTTGAAG 719
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 657 ACTGCGGCGTACCACAGACGAGCTACGGGGGAGATGGAGTTGTTCCGCTTCAACTTGAAG 716
Query 720 AATCAAGGGGCCACCAGTGCCATAACCAACAGAATTTTCAGTTCAATATCAAATATGGCT 779
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 717 AATCAAGGGGCCACCAGTGCCATAACCAACAGAATTTTCAGTTCGATATCAAATATGACT 776
Query 780 CCTCAGGGACTCACTACAACGACAA-TGGTTCCATTAACCATAACGCATACATTTCATCC 838
||||||| | ||||||||||||||| || |||| |||||||||||| |||||||| |||
Sbjct 777 CCTCAGGAAGTCACTACAACGACAACTG-TTCCCTTAACCATAACGTATACATTTTATCT 835
Query 839 ATGGAAACTGGTGTTGTGCCGGAGTCAACAGCATGTGTCACAACAGCTTCACACCCAAGA 898
||||||||||| ||||||||||||||||||||| ||| || |||||||||||||||||||
Sbjct 836 ATGGAAACTGGCGTTGTGCCGGAGTCAACAGCACGTGACAAAACAGCTTCACACCCAAGA 895
Query 899 ACGCCCAAAGGGAC-AGTAGAGCAACAACCTGACCCTGCAAGCCAGATGATAACAGTAAC 957
||||| ||| ||| | ||| |||| |||||||||| ||| ||||||||||| |
Sbjct 896 ACGCCGAAAAAGACGAC-AGACCAACTACCTGACCCTCCAATTCAGATGATAAC-----C 949
Query 958 ACAACTCAGTCCAATGGACAGAGAAGCCAGGGTCCTGAGATACAGAGAGAAGAGGAAGAC 1017
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 950 -CAACTTAGTCCAATGGACAGAGAAGCCAGGGTCCTGAGATACAGAGAGAAGAAGAAGAC 1008
Query 1018 AAGGAAATTTGAGAAGACAATAAGGTATGCTTCGAGGAAGGCATATGCAGAGATAAGACC 1077
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1009 AAGGAAATTTGAGAAGACAATAAGGTATGCTTCAAGGAAGGCATATGCAGAGATAAGACC 1068
Query 1078 GCGGGTCAATGGCCGGTTCGCAAAGAG-AGA-AA-TCGAAGCCGAGGAGCAAGGGTTCAA 1134
||||||||||||||||||||||||||| ||| || ||||||||||||| |||| ||||||
Sbjct 1069 GCGGGTCAATGGCCGGTTCGCAAAGAGGAGAGAAATCGAAGCCGAGGACCAAGTGTTCAA 1128
Query 1135 CACGATGCTAATGTACAACACAGGATATGGGATTGTTCCTTCATTCTGATACTCCTGTGG 1194
||| ||||| |||||| ||||||||||||| ||||||||||||| ||||||||||| |||
Sbjct 1129 CACAATGCTGATGTACGACACAGGATATGGCATTGTTCCTTCATGCTGATACTCCTATGG 1188
Query 1195 CAAAAAGAAAAACTAGATTGCAAGCTGTAAATTACTTTT-AGTTTGAGATTATGTTAGGT 1253
|||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1189 CAAAAATAAAGACTAGATTGCAAGCTGTAAATTACTTTTTAGTTTGAGATTCTGTTAGGT 1248
Query 1254 TTGGTGAAATTCTTAGCTTCAA-GAAGTATTACTACTGTTGTGCAAATGGGTTTGTAGTT 1312
|||||||||||| ||||||||| || ||||||||||||| ||||||||||| | |||||
Sbjct 1249 TTGGTGAAATTCGTAGCTTCAATGAT-TATTACTACTGTTATGCAAATGGGTCTATAGTT 1307
Query 1313 TTGGCTAATTAAAACTATAGTATTCTTCTTTC 1344
|||||||||||| |||||||||||| ||||||
Sbjct 1308 TTGGCTAATTAATACTATAGTATTCCTCTTTC 1339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284127523
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5