BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G15850.1
Length=1698
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488432 jgi|Araly1|488432|fgenesh2_kg.6__1566__AT5G15850.1 2095 0.0
> Ahg488432 jgi|Araly1|488432|fgenesh2_kg.6__1566__AT5G15850.1
Length=1592
Score = 2095 bits (1134), Expect = 0.0
Identities = 1493/1652 (90%), Gaps = 82/1652 (5%)
Strand=Plus/Plus
Query 5 AAATAGTTAG-AAGTTGCACGTTTCAGAACCTAGGTAACATGTGGATGGGTCCTATAGAA 63
||| |||| | || ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 13 AAA-AGTT-GCAACTTGCACGTTCCAGAACCTAGGTAACATGTGGATGGGTCCTATAGAA 70
Query 64 GATTACATAGGAAGAGGTGTTTACACTTATTGAGGAAGAAAGAGAGAAAAAGTAGTAACT 123
|||||||||||||| |||||||||||||| | | | || | | || ||| ||||||
Sbjct 71 GATTACATAGGAAGGGGTGTTTACACTTA-T-A-G-AG--A-A-AG---TAGT-GTAACT 118
Query 124 ATTGGTGCCATTGCAAAGATATAAGAAGACAATTAGtttttttCTTTCTTTCACA-TTTC 182
|||||||||||||||||||||||||||||||||||| |||| || ||||||| ||||
Sbjct 119 ATTGGTGCCATTGCAAAGATATAAGAAGACAATTAG---TTTT-GTT-TTTCACATTTTC 173
Query 183 GTGCTGGTTGATGATTCC-AAAGCTGTAAGCATCTCTGCACTGGA-CCCCTTCTCAAAAA 240
|| |||||||||||||| |||||||||||| ||||||||||||| |||||||||| |||
Sbjct 174 CTGATGGTTGATGATTCCAAAAGCTGTAAGCTTCTCTGCACTGGACCCCCTTCTCAGAAA 233
Query 241 CTCAGCCAGCCACAAGATGATCACTCAAC--ATCAAACCCACAAACTTCTCGCCACGTGT 298
|||||||||||||||| |||||| | || ||||| ||||||||||||||||||||||
Sbjct 234 CTCAGCCAGCCACAAGGTGATCAAACGACTTTTCAAAGCCACAAACTTCTCGCCACGTGT 293
Query 299 CCAGCCCTCAGAATTCTATCCTTCCTTTCCATTTCCATTCAACAACTAATATAGCCTTCT 358
|||| ||||| |||||| ||| || | | |||||||||||| ||||||
Sbjct 294 CCAGATCTCAGGATTCTA---------TCC--TT-C---C-ACAACTAATATAACCTTCT 337
Query 359 TAGTCCCCTGCTGCCTTTACATACGATCTCACTCACCATCAAACAACTACAACATCTGCG 418
|||| ||||||| |||||| |||| ||||||||||||||||||||||||||||||||| |
Sbjct 338 TAGTTCCCTGCTACCTTTAGATACAATCTCACTCACCATCAAACAACTACAACATCTG-G 396
Query 419 GTTAGTATGTTGAAAGTAGAGAGTAACTGGGCACAAGCCTGTGATACATGCCGATCAGCC 478
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 397 GTTAGTATGATGAAAGTAGAGAGTAACTGGGGACAAGCCTGTGATACATGCCGATCAGCC 456
Query 479 GCCTGCACCGTGTACTGCCGGGCTGATTCTGCCTACTTGTGCTCCAGTTGTGATGCTCAA 538
||||| |||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct 457 GCCTGTACCGTGTACTGCCGGGCTGATTCTGCCTACCTGTGCACCAGCTGTGATGCTCAA 516
Query 539 GTTCATGCTGCCAATCGTCTTGCTTCCCGCCATGAACGTGTTCGAGTCTGTCAATCATGT 598
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 517 GTTCATGCTGCCAATCGTCTTGCTTCTCGCCATGAACGTGTTCGAGTCTGTCAATCATGT 576
Query 599 GAGCGAGCCCCGGCTGCCTTTTTCTGCAAGGCAGATGCTGCATCTCTATGCACAACCTGT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 GAGCGAGCCCCGGCTGCCTTTTTCTGCAAGGCAGATGCTGCATCTCTATGCACAACCTGT 636
Query 659 GATTCAGAGATTCATTCCGCAAACCCACTTGCTAGACGCCATCAACGAGTTCCAATTCTG 718
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 GATTCAGAGATTCATTCAGCAAACCCACTTGCTAGACGCCATCAACGAGTTCCAATTCTG 696
Query 719 CCCATTTCTGAGTACTCTTACAGTTCCACGGCCACTAACCATTCATGTGAGACAACAGTG 778
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 CCCATTTCTGAAAACTCTTACAGTTCCACGGCCACTAACCATTCATGTGAGACAACAGTG 756
Query 779 ACAGATCCAGAGAACAGACTTGTGCTTGGTCAAGAAGAAGAGGATGAAGATGAAGCAGAG 838
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 757 ACAGATCCAGAGAACAGACTGGTGCTTGGTCAAGAAGAAGAGGATGAAGATGAAGCAGAG 816
Query 839 GCGGCTTCATGGTTGTTGCCTAATTCAGGGAAAAACAGTGGTAACAACAATGGCTTCTCG 898
|||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 817 GCGGCTTCGTGGTTGTTGCCTAATTCAGGGAAAAACAATGGTAACAACAATGGGTTCTCT 876
Query 899 ATTGGGGATGAGTTTCTGAACCTTGTTGATTATAGTTCGAGTGATAAGCAATTCACAGAT 958
||||| || ||||||||| ||||||||||||| ||||||||||||||||||||||| |||
Sbjct 877 ATTGGTGACGAGTTTCTGGACCTTGTTGATTACAGTTCGAGTGATAAGCAATTCACGGAT 936
Query 959 CAATCCAATCAGTATCAACTAGACTGCAACGTACCTCAGAGGAGCTATGGGGAAGATGGA 1018
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 937 CAATCCAATCAGTATCAACTAGACTGCAACGTACCTCAGAGGAGCTATGAGGA---TGGA 993
Query 1019 GTTGTTCCACTTCAAATTGAAGTATCAAAGGG-CA--TGTACCAAGAGCAACAGAACTTT 1075
|| || ||||||||| |||||||||||||||| || || |||| |||||||||||||||
Sbjct 994 GTCGTACCACTTCAAGTTGAAGTATCAAAGGGTCACATGCACCACGAGCAACAGAACTTT 1053
Query 1076 CAGCTGAGTATCAACTGTGGCTCCTGGGGAGCTCTTCGAAGCTCCAATGGTTCCCTCAGT 1135
||| ||||||||| |||||||||| |||||| ||||||||||||||||||||| |||
Sbjct 1054 CAGTTGAGTATCACCTGTGGCTCCCCAAGAGCTCATCGAAGCTCCAATGGTTCCCTAAGT 1113
Query 1136 CATATGGTGA-ATGTTTCATCTATGGACCTGGGAGTTGTGCCGGAGTCAACAACGAGTGA 1194
|||||||| | ||||||||||||| ||||||||||||||||| || | | |
Sbjct 1114 CATATGGT-ACATGTTTCATCTATTGACCTGGGAGTTGTGCC--AG--A-----G--T-- 1159
Query 1195 CGCAACAGTATCAAACCCAAGATCGCCCAAAGCGGTAACAGACCAACCACCTTACCCTCC 1254
| |||| | | |||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1160 C--AACA--A--A--CCCAAGATCGCCCAAAGCGGTAACAGACCAACTACCTGACCCTCC 1211
Query 1255 AGCTCAGATGCTCAGTCCAAGGGACagagaagctagagtcctgagatacagagagaagaa 1314
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1212 AGCTCAGATGCTCAGTCCAAGAGACAGAGAGGCTAGAGTCCTGAGATACAGAGAGAAGAA 1271
Query 1315 gaagatgaggaaatttgagaagaCGATAAGATATGCTTCAAGGAAAGCGTATGCAGAGAA 1374
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 GAAGATGAGAAAATTTGAGAAGACGATAAGATATGCTTCAAGGAAAGCGTATGCAGAGAA 1331
Query 1375 AAGACCACGGATCAAGGGCCGGTTTGCAAAGAAGAAAGATGTCGATGAAGAGGCAAACCA 1434
|||||||||||||||||| ||||||||||||| ||| || || |||| |||||||||| |
Sbjct 1332 AAGACCACGGATCAAGGGGCGGTTTGCAAAGAGGAACGAAGTTGATGCAGAGGCAAACGA 1391
Query 1435 AGCTTTCTCCACAATGATAACATTTGACACCGGATATGGAATTGTTCCATCATTCTGATG 1494
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1392 AGCTTTCTCCACAATCATAACGTTTGACACCGGATATGGAATTGTTCCATCATTCTGATG 1451
Query 1495 CTGCTATGGCAAAACTAGACTGCATGCTTGTAAATTACTTCTGGTTTGAAATTCCTGCAA 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1452 CTGCTATGGCAAAACTAGACTGCATGCTTGTAAATTACTTCTGGTTTGAAATTCCTGCAA 1511
Query 1555 GTTATTACCACGGTTTTATGCATATAGGGTCTGTAGTTTACTAGTTTTGCCTAACTAGTA 1614
||| ||||||||||| ||||||||||| ||||||||| | || | |||||||||
Sbjct 1512 GTTGTTACCACGGTT--ATGCATATAGGC-CTGTAGTTT--T-GT----C-TAACTAGTA 1560
Query 1615 CGAGTTAATTAGATATACACTCATACTTAGCT 1646
||||||||||||||||| | ||||| ||||||
Sbjct 1561 CGAGTTAATTAGATATATATTCATATTTAGCT 1592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63686889640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5