BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G15870.1 Length=2238 Score E Sequences producing significant alignments: (Bits) Value Ahg941077 jgi|Araly1|941077|scaffold_601621.1 3441 0.0 > Ahg941077 jgi|Araly1|941077|scaffold_601621.1 Length=2287 Score = 3441 bits (1863), Expect = 0.0 Identities = 2119/2244 (94%), Gaps = 12/2244 (1%) Strand=Plus/Plus Query 1 ATGTTGAAAAAAGTGAGGCGAAAAGTCAAAGTCTTAATCACCAAACCCTTTAAAAAGCCC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27 ATGTTGAAAAAAGTGAGGCGAAAAGTCAAAGTCTTAATCACCAAACCCTTTAAAAAGCCC 86 Query 61 AAGAACAGacc-tcca--tcaccaccaccacctcttcctcttcctccttcaccatctcca 117 ||||||| ||| || | | ||| ||||||||||||||||||||||||||||||||||| Sbjct 87 AAGAACACACCTTCAAGGCCTCCATCACCACCTCTTCCTCTTCCTCCTTCACCATCTCCA 146 Query 118 ccaccGTCTCAACAAATGTCTTCCTCAAGACaaaaaaaCACTCCGTTTCTCTTCCCAAGA 177 |||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 147 CCACCGCCTCAAGAAATGTCTTCCTCAAGACAAAGAAACACTCCGTTTCTCTTCCCAAGA 206 Query 178 TCCGATTCCTCTGTTCTACCCGACCCGTCTCGTTTCTTCAGCCACGATCTCCTCTCATCT 237 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 207 TCCGATTCCTCTGTTTTACCCGACCCGTCTCGTTTCTTCAGCCACGATCTCCTCTCAACT 266 Query 238 CCTCTCCCTACAAACTCTTTCTTCCAAAACTTCACTCTCAACAATGGCGACCAAGCTGAG 297 |||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 267 CCTCTCCCCACAAACTCATTCTTCCAAAACTTCACTCTCAAAAATGGCGACCAAGCTGAG 326 Query 298 TACTTTCATCCTTACATCATCAAACCCTCGACTTCATCTCTCTCCATCTCCTACCCATCT 357 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 327 TACTTTCACCCTTACATCATCAAACCCTCGACTTCATCTCTCTCCATCTCATACCCATCT 386 Query 358 CTCTCCCACAACTCTGCTTTCATCTACGAAGCTTTCAACGCCGACATAACCATAACCGGG 417 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 387 CTCTCCCACAACTCTGCTTTCATCTACGAAGCTTTCAACGCCGACATCATCATAACCGGG 446 Query 418 TCAGATGGACCCGACCCGCATTCTCGTAAATCTCATCTCATCTCTTCCTTCAGCGATCTC 477 |||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| Sbjct 447 TCAGATGGACCCGACCCGCATTCTCGAAAAACTCATCTGATCTCTTCCTTCAGCGATCTC 506 Query 478 GGCGTCACTCTCGATTTCCCCTCCTCTAATCTCAGATTCTTCCTCGTTAGAGGAAGCCCT 537 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 507 GGCGTCACTCTCGATTTCCCTTCCTCTAATCTCAGATTCTTCCTCGTCAGAGGAAGCCCT 566 Query 538 TTCATCACCTTCTCCGTTAACTCCTCCATCACAATCTCAACGATCCACGCTGTTTTATCA 597 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 567 TTCATCACCTTCTCCGTTAACTCCTCCATCACAATCTCAACGATCCACGCCGTTTTATCA 626 Query 598 CTTTCCGGTAACACCTCTTCAACAAAGTACACCGTCAAACTCAACAACAACCAAACATGG 657 ||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| Sbjct 627 CTTTCCGGTAACACCTCATCAACAAAGTACACCGCCAAGCTCAACAACAACCAAACATGG 686 Query 658 CTAATCTACGCCTCTTCTCCGATCAATCTAACCAAAGACGGCGTTTCTTCAATCAATTGC 717 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 687 CTAATCTACGCCTCTTCTCCGATCAATCTAACCAAAGACGGCGTTTCTTCCATCAATTGC 746 Query 718 GGTGATGGGTTTTCGGGTATTATCCGGATCGTCGTGTTACCAAATCCAAATCCGTATTTC 777 |||| ||||||||||||||||||||| ||||||| ||||||||||||| || | || Sbjct 747 GGTGCTGGGTTTTCGGGTATTATCCGAATCGTCGCGTTACCAAATCCAGAT---T-TT-- 800 Query 778 GAAACAATCCTCGACGGATTCAGTTGCTCTTACCCAGTTTCCGGTGACGCTGATTTCACA 837 ||| || |||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 801 GAATCAGTCCTCGACAGATTCAGTTGCTGTTACCCAGTTTCCGGTGACGCTGATTTCACA 860 Query 838 AAGCCGTTTGCTTTAGAGTATAAATGGGAGAAACGAGGCTATGGAGATCTTCTAATGCTA 897 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 861 AAGCCCTTTGCTTTAGAGTATAAATGGGACAAACGAGGCTATGGAGATCTTCTAATGCTA 920 Query 898 GCTCATCCTCTTCATCTCAAGCTTTTATCAACCAACGATTGTTCTATCACAGTTCTAGAC 957 ||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| Sbjct 921 GCTCATCCTCTTCATCTCAAGCTTTTATCAAACAACGATTGTTCAATCGCAGTTCTAGAC 980 Query 958 AATTTCAAATACAACAGCATCGACGGTGATTTAGTAGGTGTCATCGGAGATTCATGGGTT 1017 ||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 981 AATTTCAGATACAACAGCATCGACGGAGATTTAGTAGGTGTCGTCGGAGATTCATGGGTT 1040 Query 1018 TTAAAACCAGACCCTGTTTCTGTTACGTGGCACTCTATCAAAGGAGTTCAAGAAGATTCT 1077 || ||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 1041 TTGAAACCAGACCCTGTTTCGGTAACGTGGCACTCTATCAAAGGAGTTCAAGAAGATTCT 1100 Query 1078 CACCAAGAGATCATCTCTGCTCTAATCAAAGACGTTAACGCTTTAGATTCATCAGCTGAG 1137 ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| | Sbjct 1101 CACCAAGAGATTATCTCAGCTCTAATCAAAGACGTAAACGCTTTAGATTCATCAGCTCCG 1160 Query 1138 GTCACCAACTCTTCGTATTTCTACGCGAAATTGATCGCGAGGGCGGCGAGGTTAGCTTTA 1197 ||||| ||||||||||||| ||||||||||||||||| || || ||||||||||||||| Sbjct 1161 GTCACGGACTCTTCGTATTTTTACGCGAAATTGATCGCTAGAGCTGCGAGGTTAGCTTTA 1220 Query 1198 ATAGCTGAAGAAGTTTGTTATCTGGATGTTATTCCAAAGATTAGAACTTACTTGAAGAAC 1257 || |||||||||||||||||||| ||||| |||||| |||||||||||||||||||||| Sbjct 1221 ATCGCTGAAGAAGTTTGTTATCTCGATGTGATTCCAGCGATTAGAACTTACTTGAAGAAC 1280 Query 1258 ATGATCGAGCCGTGGCTTAATGGAAGTTTCGGACCAAATGGTTTCTTGTATGATCCAAAA 1317 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| Sbjct 1281 ATGATCGAGCCGTGGCTTAATGGAAGTTTCGGACCAAATGGGTTCTTATATGATCCTAAA 1340 Query 1318 TGGGGAGGTGTGATTACTAAGCTAGGATCTAGAGATTCAGGAGCAGATTTTGGGTTTGGG 1377 |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||| Sbjct 1341 TGGGGAGGTGTGATCACCAAGCTAGGATCGAGAGATTCAGGAGCAGATTTTGGGTTTGGG 1400 Query 1378 ATTTACAATGATCATCATTATCATTTAGGTTACTTTGTTTATGCGATTGCTGTGCTTGCA 1437 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1401 ATTTATAATGATCATCATTATCATTTAGGCTACTTTGTTTATGCGATTGCTGTGCTTGCA 1460 Query 1438 AAGATTGATCCTTTATGGGGGAAGAGATACAGACCTCAAGCGTATACTTTAATGGCGGAT 1497 |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 1461 AAGATTGATCCTTTATGGGGAAAGAGATACAAACCTCAAGCGTATACTTTAATGGCGGAT 1520 Query 1498 TACTTGACGTTGGGGAAGAAAGGAGCCAAGTCGAATTCGAATTACCCGCGTTTGAGATGC 1557 ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1521 TACATGACGTTGGGGAAGAAAGGAGCTAAGTCGAATTCGAATTACCCGCGTTTGAGATGT 1580 Query 1558 TTTGATCTTTTCAAGCTTCATTCTTGGGCTGGAGGGTTAACGGAGTTCGCTGACGGGAGG 1617 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1581 TTTGATCTTTTCAAGCTTCATTCTTGGGCTGGAGGGTTAACGGAGTTCGCCGACGGGAGG 1640 Query 1618 AATCAAGAGAGTACAAGCGAGGCTGTCAATGCGTATTACTCCGCTGCTTTGTTGGGGCTA 1677 ||||| |||||||| || |||||||| ||||||||||||||||| || ||||| ||| || Sbjct 1641 AATCAGGAGAGTACGAGTGAGGCTGTGAATGCGTATTACTCCGCCGCGTTGTTAGGGTTA 1700 Query 1678 GCTTATGGGGATACACATTTGGTGGCGGCTGCTTCGATGGTTCTGACGCTGGAGATTCAC 1737 ||||| || ||||||||| |||||||||| ||||||| ||||||||| |||||||||||| Sbjct 1701 GCTTACGGTGATACACATCTGGTGGCGGCGGCTTCGACGGTTCTGACTCTGGAGATTCAC 1760 Query 1738 GCGGCGAAAATGTGGTGGCAGGTGAAAGAAGACGACGCTATTTACCCGCAAGATTTCACA 1797 || |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 1761 GCCGCGAAAATGTGGTGGCAGGTGAAAGAAGACGACGCTATATACCCGCAAGACTTCACA 1820 Query 1798 TCGGAGAATCGTGTGGTTGGAGTGTTATGGTCAACAAAGAGAGACAGTGGCTTATGGTTC 1857 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1821 TCGGAGAATCGTGTGGTTGGAGTTTTATGGTCAACAAAGAGAGACAGTGGCTTATGGTTT 1880 Query 1858 GCGCCTAAAGAGTGGAAAGAATGTCGCCTTGGGATACAGTTATTACCGTTACTTCCGGTA 1917 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1881 GCGCCTAAAGAGTGGAAAGAATGTCGCCTTGGGATACAGTTATTACCGTTACTTCCGGTA 1940 Query 1918 TCAGAAGTTCTGTTCTCGGACGTGACATTCGTGAAACAGCTCGTGAATTGGACAATGCCT 1977 ||||||||||| || || || || ||||||||||| ||||||||||||||||||||||| Sbjct 1941 TCAGAAGTTCTATTTTCCGATGTAACATTCGTGAAGCAGCTCGTGAATTGGACAATGCCG 2000 Query 1978 GCTTTGGCTAGAGACAGCGTCGGAGAAGGGTGGAAAGGATTTGTGTATGCTTTGGAAAGT 2037 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2001 GCGTTGGCGAGAGACAGCGTCGGAGAAGGGTGGAAAGGATTTGTGTATGCTTTGGAAAGT 2060 Query 2038 ATGTACGACAAAGATGGAGCAATGGAGAAGATTAAAGGATTAAATGGGTTTGATGATGGG 2097 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2061 ATTTACGACAAAGATGGAGCAATGGAGAAGATTAAAGGATTAAATGGGTTTGATGATGGG 2120 Query 2098 AACTCTTTAAGTAATCTGTTGTGGTGGGTTCATAGTAGAAACAatgatgatgatgatgat 2157 |||||| | |||||||| ||||||||| |||| ||||||||||||||||||||||||||| Sbjct 2121 AACTCTCTGAGTAATCTTTTGTGGTGGATTCACAGTAGAAACAATGATGATGATGATGAT 2180 Query 2158 --T-ATGAAGAAGACGATGAAGGTGGTTATGGTGGTCATGGCGGTGGCGGGAAGTATTGT 2214 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2181 GATTATGAAGAAGACGATGAAGGTGGTTATGGTGGTCATGGCGGTGGCGGGAAGTATTGC 2240 Query 2215 TCCTTTGGTCATTATTGTCATTAA 2238 || ||||||||||||||| ||||| Sbjct 2241 TCGTTTGGTCATTATTGTAATTAA 2264 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 84255621940 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5