BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16030.3
Length=1278
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893513 jgi|Araly1|893513|Al_scaffold_0006_1509 1343 0.0
Ahg488454 jgi|Araly1|488454|fgenesh2_kg.6__1588__AT5G16040.1 110 3e-23
> Ahg893513 jgi|Araly1|893513|Al_scaffold_0006_1509
Length=1017
Score = 1343 bits (727), Expect = 0.0
Identities = 953/1054 (90%), Gaps = 47/1054 (4%)
Strand=Plus/Plus
Query 65 ATGGCTTTGCGAGGAGATGAGCATGAGTTTATGAACTTAAGAGAATGGGATCGAAGAGCT 124
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGGCTTTGCGAGGAGATGAGCCTGAGTTTATGAACCTAAGAGAATGGGATCGAAGAGCT 60
Query 125 CGATTAATCCGCGAAAACCCGAGTTCAAGAAGATTCTCAGCTTCATACATTGGAAGCTTC 184
|| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 61 CGTTTAATCCGCGAAAACCCGACTTCAAGAAGATTCTCTGCTTCATACATTGGAAGCTTC 120
Query 185 CGAGAAGATCACCACAAGTCTTCTTTTAGAACAACAAACTTCAACAACATCTCTAGTACT 244
||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 121 CGAGAAGATCATCACAAGTCTTCTTTTAG---AACAAACTTCAACAATATCTCTAGTACT 177
Query 245 GCCTCTTCTCCTGGCTACACTCTCAAAGAAGAGATTGACCCATCAACATATTCCTTCACC 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GCCTCTTCTCCTGGCTACACTCTCAAAGAAGAGATTGACCCATCAACATATTCCTTCACC 237
Query 305 AATGCACTCAAAGCATTACAAGCAAAGACAATGTACAATAACAGGGAATGGTTAGCACAA 364
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 238 AATGCACTTAAAGCATTACAAGCAAAGACAATGTACAATAACAGAGAATGGTTAGCACAA 297
Query 365 GAAGGGTTTGCATTGAATTCGAAGTGGAACGAAGCAGAGAAATATATCTGCAATCCATTG 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GAAGGGTTTGCATTGAATTCGAAGTGGAACGAAGCAGAGAAATATATCTGCAATCCATTG 357
Query 425 TCTGGAGAAGTACCAATGGAGTGTTTGTCTGCTAAAACATTAAGTGCAAGATCCTTCAGA 484
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TCTGGAGAAGTTCCAATGGAGTGTTTGTCTGCTAAAACATTAAGTGCAAGATCCTTCAGA 417
Query 485 AACTTATCAACCATGTCTGCTCCTCTTCA-C--TTCCCTAGTCCCAATCCATTGATGAAT 541
|||||||| |||||||||||||||||||| | ||||||| |||||||||||||||||||
Sbjct 418 AACTTATCCACCATGTCTGCTCCTCTTCAACACTTCCCTAATCCCAATCCATTGATGAAT 477
Query 542 AATATTGCTCAAAACAAACCAAATAATAATCCTAACGTTAGAGTCATTCACGAGGATCTT 601
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 478 AATATTGGTCAAAACAAACCAAATAATAATCCTAACGTTAGAGTTATTCACGAGGATCTT 537
Query 602 TATGCTCCTGATCCTGAACTTCTTGCTCTAGTA-AATTATgggggggTGTTTTTAGCGGA 660
|||||||||||||||| |||| |||||| || | || | | | ||| | |||
Sbjct 538 TATGCTCCTGATCCTGTACTTGTTGCTCGAGCAGAAA-A-GAAAGT-TGTG----G-GGA 589
Query 661 A-AAGAAAGTTGTGGGGATGAAGCGAGATGTGGGCATACAGAGTACGACGTCGGTGGATC 719
||| || |||||| || | | ||| |||| || || || | ||||||
Sbjct 590 TGAAGCGAGATGTGGGCAT-A--C-AGA-------ATAC-GA---CGTCG--G-TGGATC 631
Query 720 TTAGCTCCGGTAGCCCTAGTCCGGCAAAAACGCCTCCGATTATGGAAAGGTCGTTAAAAC 779
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||
Sbjct 632 TTAGCTCCGGTAGCCCTAGTCCGGCAAAGACGCCTCCGATTACGGAAAGGTCGTTGAAAC 691
Query 780 GACACGTGGAAGCTGATGATTGGCCAGTGGATATCAATCTCAAAGTGAAAGGTCAACAAC 839
||||||||||||||||||||| |||| ||||| ||||||||||| ||||||||||||||
Sbjct 692 GACACGTGGAAGCTGATGATTCGCCACTGGATTTCAATCTCAAACTGAAAGGTCAACAAG 751
Query 840 AGGATGTgaagttgg-aagagaaagaaaaagaagaagagaagcaagatatgagcaacgaa 898
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 752 AGGATGTGAAGTTGGGAA-AGAAAGAAAAAGAAGAAGAGAAGCAAGATATGAGCAACGAG 810
Query 899 gaagatgaagaagaagaagaagaagagaagcaagatatgagtgaagaagatgataaa-ga 957
||||| |||| ||||||||||| ||| | | |||| | ||| || ||||| || | ||
Sbjct 811 GAAGAAGAAGGAGAAGAAGAAGTAGA-A-G-AAGA-A-GAGA-AACAAGAT-ATTAGTGA 863
Query 958 agaagaagacgaac---aagaagaagaagagaagaccaagaagaagaagagaGGACCTGG 1014
|||||| || ||| || || |||||||||||||||||||||||||||||||| ||||
Sbjct 864 AGAAGATGAAGAAGGGGAACAACAAGAAGAGAAGACCAAGAAGAAGAAGAGAGGAACTGG 923
Query 1015 ATGTTTCTCATGGGTGAGATCAAGACAAAGACAAGCAAGAAAATCAAAGTATATCTTCCC 1074
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 924 ATGTTTCTCATGGGTGAGAACAAGACAAAGACAAGCAAGAAAATCAAAGTACATCTTCCC 983
Query 1075 TATTTGTGTTCCTCATCTTGTCAAAGGTTGTTGA 1108
||||||||||||||||||||||||||||||||||
Sbjct 984 TATTTGTGTTCCTCATCTTGTCAAAGGTTGTTGA 1017
> Ahg488454 jgi|Araly1|488454|fgenesh2_kg.6__1588__AT5G16040.1
Length=1397
Score = 110 bits (59), Expect = 3e-23
Identities = 69/73 (95%), Gaps = 3/73 (4%)
Strand=Plus/Minus
Query 1209 ATCAAAAACAAAATCATGATGATATTATAT-TTAGTTCTTCCTC--TTTCATATAGATTC 1265
|||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct 1397 ATCAAAAACAAAATCATGATGATATTATATATTAGTTCTTCCTCTTTTTGATATAGATTC 1338
Query 1266 ATCATTCATGGGA 1278
|||||||||||||
Sbjct 1337 ATCATTCATGGGA 1325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47768015001
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5