BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16080.1
Length=1304
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488458 jgi|Araly1|488458|fgenesh2_kg.6__1592__AT5G16080.1 1764 0.0
> Ahg488458 jgi|Araly1|488458|fgenesh2_kg.6__1592__AT5G16080.1
Length=1265
Score = 1764 bits (955), Expect = 0.0
Identities = 1187/1293 (92%), Gaps = 40/1293 (3%)
Strand=Plus/Plus
Query 1 ACTCAATCCAAACTCAACCCACAACGCTACA---CAT--TaaaaaataaaaaaCCTATGG 55
||||||||||||||||||| ||||||||||| ||| |||||||||||||||| ||||
Sbjct 1 ACTCAATCCAAACTCAACCAACAACGCTACACTTCATCATAAAAAATAAAAAACCAATGG 60
Query 56 CAACCATTTCCTTCTCTCACAACCACCAATCCTCCGACAACCGCCGTGGTGGATCCCATC 115
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 61 CAACCATTTCCTTCCCTCACAACCACCAATCCTCCGACAGCCGCCGTGGTGGATCCCACC 120
Query 116 ACCACCGTCACGGCCCCGTCGTGGAAGAGATCGAAGGACTCATCAAAGTTTTCAACGACG 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACCACCGTCACGGCCCCGTCGTGGAAGAGATCGAAGGACTCATCAAAGTTTTCAACGACG 180
Query 176 GCTGCGTCGAAAGACCTCCCATAGTTCCCATCGTCTCA-CCAACCATTCACCCATCTTCT 234
|||||||||||||||||||||||||||||| ||||||| || ||| ||||||||||| ||
Sbjct 181 GCTGCGTCGAAAGACCTCCCATAGTTCCCACCGTCTCATCC-ACCCTTCACCCATCTGCT 239
Query 235 AAAGCCACAGCCTTTGACATCAAACTATCCAACGACACATGGACACGTGTCTACATCCCC 294
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 240 AAAGCCACAGCCTTTGACATCAAACTATCCAACGACACATGGACACGTGTATACATCCCC 299
Query 295 GATGCCGCAGCAGCCTCGCCGTCCGTTACTCTCCCTCTCCTCGTTTACTTCCACGGCGGT 354
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GACGCCGCAGCAGCCTCGCCGTCCGTTACTCTCCCTCTCCTCGTTTACTTCCACGGCGGT 359
Query 355 GGTTTCTGCGTTGGCTCCGCCGCTTGGAGTTGCTACCATGACTTCTTGACCAGCCTTGCC 414
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 360 GGCTTCTGCGTTGGCTCCGCAGCTTGGAGTTGCTACCATGACTTCTTGACCAGCCTCGCC 419
Query 415 GTTAAAGCCCGTTGCGTCATCGTTTCCGTAAACTACCGTTTAGCCCCTGAACACCGTCTC 474
||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 420 GTTCAAGCCCGTTGCGTTGTCGTCTCCGTAAACTACCGTTTAGCCCCTGAACACCGTCTC 479
Query 475 CCGGCGGCGTACGACGACGGCGTTAATGTCGTCTCGTGGCTAGTCAAGCAACAAATATCT 534
|||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| ||||
Sbjct 480 CCGGCGGCGTACGATGACGGCGTTAACGTCGTCACGTGGCTAGTCAAGCAACAAACATCT 539
Query 535 ACCGGTGGTGGATATCCTTCTTGGTTGAGTAAATGTAACCTCTCAAACGTTTTCTTGGCC 594
| | |||||||||||||||||| ||||||| || |||||||||||||||| |||||||
Sbjct 540 AAC---GGTGGATATCCTTCTTGGGTGAGTAAGTGCAACCTCTCAAACGTTTACTTGGCC 596
Query 595 GGAGATAGCGCCGGAGCCAACATAGCTTACCAAGTCGCCGTAAGAATCATGGCCAGTGGC 654
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 597 GGAGATAGCGCCGGAGCCAACATAGCTTACCAAGTCGCCGTCAGAATCACCGCCAGTGGC 656
Query 655 AAATACGCAAACACTCTACACCTCAAGGGCATTATTCTCATCCACCCTTTCTTCGGCGGC 714
||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||||
Sbjct 657 AAATACGTAAACACTCCAAACCTCAAGGGCATAATTCTCATCCACCCTTTCTTCGGCGGC 716
Query 715 GAATCAAGAACGTCTTCGGAGAAACAACAACATCACACCAAGTCATCGGCGCTTACTCTT 774
|||||||||||||| ||||||||||| ||||| ||| ||||||||||||| || ||||||
Sbjct 717 GAATCAAGAACGTCCTCGGAGAAACAGCAACACCACTCCAAGTCATCGGCTCTAACTCTT 776
Query 775 TCAGCTTCCGACGCATATTGGCGTCTAGCTCTGCCACGTGGAGCGAGTAGAGACCATCCA 834
||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 777 CCAGCTTCCGACGCGTATTGGCGACTGGCTCTGCCACGTGGAGCGAGTAGAGACCATCCT 836
Query 835 TGGTGTAACCCTCTGATGAGCT---CGGCGGGAGCGAAGTTACCGACGACGATGGTGTTC 891
||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||
Sbjct 837 TGGTGTAACCCTCTGGGGAGCTCGACGGCGGGTGCGAAGTTACCGACGACGATGGTGTTC 896
Query 892 ATGGCGGAGTTTGATATACTAAAAGA-ACGAAACTTGGAGATGTGTAAAGTGATGAGAAG 950
|||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct 897 ATGGCGGAGTTTGATATACTAAAAGATA-GAAACTTGGAGATGTGTGAAGTGATGAGAAG 955
Query 951 CCATGGGAAGAGAGTTGAAGGTATAGTTCATGGAGGTGTTGGTCACGCTTTTCATATTCT 1010
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 956 CCATGGGAAGAGAGTTGAAGGTATTGTTCATGGAGGTGTTGGTCACGCTTTTCATATTCT 1015
Query 1011 CGACAACTCGTCGGTGTCACGTGATCGAATCCACGACATGATGTGTCGTCTTCACAACTT 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CGACAACTCGTCGGTGTCACGTGATCGAATCCACGACATGATGTGTCGTCTTCACAACTT 1075
Query 1071 CATACATCCATCATAATAATTCCCTAAAGACCTT-TTTCTGAAACCTTTAATTGATTTAA 1129
||||||||||| | | ||||||||||||||| || |||| | ||||| |||||||||| |
Sbjct 1076 CATACATCCAT-A-A-TAATTCCCTAAAGACTTTCTTTC-GCAACCTATAATTGATTTTA 1131
Query 1130 AATGTTGTTCTTGAAAAATAATAAGAGATAAAAACTTGAAATGTTGTGTTTTTATTGTGG 1189
||||||| || ||| || | ||| | | | | ||||||||| |||||||
Sbjct 1132 AATGTTG-----GA----TAA-AA-ACTTAATA--T-G---T-TTGTGTTTTGATTGTGG 1173
Query 1190 ATTAAAGTAAGCTTTGCTTTGTAGTGTTTTTTCAGTGAAGGTGAATA-GTATAAATTATG 1248
||||||||||| ||||||||||||||||||| || || | ||| || | ||||||||||
Sbjct 1174 ATTAAAGTAAGTTTTGCTTTGTAGTGTTTTT-CAATGGATGTGTATTTGGATAAATTATG 1232
Query 1249 TAATACAATAGATGGACTTGTACTTTTAAGTTA 1281
|||| | ||||||||||||||||||||||||||
Sbjct 1233 TAATTCTATAGATGGACTTGTACTTTTAAGTTA 1265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48759210843
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5