BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G16110.1 Length=1474 Score E Sequences producing significant alignments: (Bits) Value Ahg488459 jgi|Araly1|488459|fgenesh2_kg.6__1593__AT5G16110.1 1738 0.0 Ahg477491 jgi|Araly1|477491|fgenesh2_kg.3__192__AT3G02555.1 97.1 3e-19 > Ahg488459 jgi|Araly1|488459|fgenesh2_kg.6__1593__AT5G16110.1 Length=1356 Score = 1738 bits (941), Expect = 0.0 Identities = 1277/1422 (90%), Gaps = 91/1422 (6%) Strand=Plus/Plus Query 36 AAAAATTAGAAATGCATGAAAATTAAGCTGTCCACAAATATCACTATTACGACGCCGAGA 95 |||||| | ||||||||||||||||||||||||||||||||||||| ||||||| ||| | Sbjct 1 AAAAATAATAAATGCATGAAAATTAAGCTGTCCACAAATATCACTAATACGACGGCGATA 60 Query 96 AAAAGCAACTTTCCAGTTTGATATACTATTTTGTTTTTAAAGCAAAAATTCCCAATTCCA 155 |||||| | | || | | | | | ||||||||||||| ||| ||||| | Sbjct 61 AAAAGC-A------A--TT--T-T-CCA----G--TTTAAAGCAAAAAATCCTAATTCAA 101 Query 156 -CGAAACGTCGTCGTTTCATGTTGTCTTCAACCTCACCCACACTTTCTTCGGTCTCATCC 214 | ||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 102 CCAAAACGTCATCGTTTCAAGTTGTCTTCAACCTCACCCACAC-TTCTTCGGTCTCATCC 160 Query 215 TTTTATAAAATCCCCATTTCCTCTAACGATTTTTCGCctctctctctctctctctctctc 274 |||||||||||||| ||||||||| ||||||||||| | ||||||||||||| Sbjct 161 TTTTATAAAATCCCTATTTCCTCTGACGATTTTTCG---------C-CTCTCTCTCTCTC 210 Query 275 tctctctttcttctatcttctccgtcatcgttctctctctctcctctcCCGGAGATTTTT 334 |||||| || || || ||| | || || |||||||| || || | |||||||||||| Sbjct 211 TCTCTC--TC-TC--TC-TCT-C-TC-TC--TCTCTCTC-CT-CT-T-CCGGAGATTTTT 255 Query 335 ACTCAGGCGTTCTTCTGTGGATCAGAGGTGAAAAAGATGAATCATTGCAACCTTCAGCAG 394 |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 256 ACTCAGGCGTTCTTCTGTGGATCAAAGGTGAAGAAGATGAATCATTGCAACCTTCAGCAG 315 Query 395 AACGCCTTCATGTCTCGTGAGGAGATGATGGGATTTGACCGTAAGGATCTTGTTGTTTGT 454 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 316 AACGCCTTCATGTCTCGTGAGGAGATGATGGGATTTGATCGCAAGGATCTTGTTGTTTGT 375 Query 455 CCTAAGCCTCGACGTGTTGGTTTACTCGCCAACAACGTTATTCGTCCTCTTAGATTACAT 514 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 376 CCTAAGCCTCGACGTGTTGGTTTACTCGCCAACAACGTCATTCGTCCTCTCAGATTACAT 435 Query 515 ATGAGTCAAGCTGC-AGCCGACTTGTGTGATTCTAAAGCTGGTGCTGAGCTTTTGGAAAT 573 |||||||||||||| | | || ||||||||||||||||||||||| |||||||||||||| Sbjct 436 ATGAGTCAAGCTGCTA-CTGATTTGTGTGATTCTAAAGCTGGTGCAGAGCTTTTGGAAAT 494 Query 574 CATTCGTAGAAAGGAGGATAATGGAACAATAGGGCAGTTACTATCATCATCCCCACCGTA 633 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 495 CATTCGTAGAAAGGAGGATAATGGAACAATAGGGCAGTTACTATCATCATCGCCACCATA 554 Query 634 TTTTCCCGGTTCACCACCGAGTAGAGCGGCGAACCCATTAGCCCAAGATGCTCGTTTTCG 693 |||||| || |||||||| || |||||||||||||||||||||||||||||||| ||||| Sbjct 555 TTTTCCTGGCTCACCACCCAGCAGAGCGGCGAACCCATTAGCCCAAGATGCTCGCTTTCG 614 Query 694 AGATGAGAAACTCAATCCAATCTCACCAAACTCTCCTTTCCTTCAG-CCATATTCGGCAA 752 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 615 AGATGAGAAACTCAATCCAATCTCACCAAACTCTCCTTTCCTTCAGCCCA-ATTCGGCAA 673 Query 753 CCGGGTTTCCATCTCCATCTTCTTCCTCATCATCGTCGTCTTCCCGTGGTTGTGTTAGAA 812 |||| ||||| |||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 674 CCGGTTTTCCGTCTCCATCTTCTTCGTCATCATCGTCG---TCCCGTGGTTGTGTTAGAA 730 Query 813 TGAAATTTGGACTCAACTCGCCTGCAGTTAGAGTAGAAGGATTTGATTGCTTGAACCGTG 872 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 731 TGAAATTTGGACTCAACTCGCCTGCAGTTAGAGTAGAAGGATTTGATTGCTTGAACCGTG 790 Query 873 ACCGTCAAAACTCGAGCATCCCTGCCATGGCTTAGTAGACAAACAACaaaaaaaCAAGTG 932 |||| ||||||||||||||||||||||||||||||||||||||||| || || |||||| Sbjct 791 ACCGCCAAAACTCGAGCATCCCTGCCATGGCTTAGTAGACAAACAA-AAGAA--CAAGTG 847 Query 933 TACATAGAGATTCCGGAATCGTTCGTTCGCCAATGCCTAACAGAGGAGGATTTGATTACT 992 || ||||||||||||||||||||| | | ||||||||||||||||||||||||||||| Sbjct 848 TATATAGAGATTCCGGAATCGTTCA--C-C-AATGCCTAACAGAGGAGGATTTGATTACT 903 Query 993 ACTGCTGCAACTATTACTACTACCATTTTTGAAAGTAAATGAATATGTTTTTGTTTTTCA 1052 |||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 904 ACTGCTGCTACTATTACTACTACCATTTTTGAA-GTAAATGAATATGTTTTTGCTTTTCA 962 Query 1053 TCTTCTCCTAagaga--gagagaga-g-GGAAG-AGGAAGGAGGAAGATGAAGATCAGTT 1107 |||| |||||||||| ||||| || | ||||| |||||||||||||||||||||||||| Sbjct 963 TCTTTTCCTAAGAGATCGAGAGGGAAGAGGAAGGAGGAAGGAGGAAGATGAAGATCAGTT 1022 Query 1108 ACCGTCGCCGGTCACCGTTT---AACTGTTTTATTCAGGTTAGTGTTTGTATATAAAGAT 1164 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1023 ACCGTCGCCGGTCACCGTTTTTTAACTGTTTTATTCAGGTTAGTGTTTGTATATAAAGAT 1082 Query 1165 GCAGTATTTAAAAGAAGAGTCGAATCTATGTATTCGTTTGGTGTTTTTCTGGGTCGGGCG 1224 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1083 GCAGTATTTAAATGAAGAGTCGAATCTATGTATTCGTTTGGTGTTTTTCTGGGTCGGGCG 1142 Query 1225 GATCTTTAGTACTGTTTCATATATAACTAAGAGG-GAAGATTAGAAGATGAAGAAGCTGT 1283 |||||||| ||||||| ||||||||||||| || ||||||||||||| | | ||| Sbjct 1143 GATCTTTATTACTGTT--ATATATAACTAAG-GGAGAAGATTAGAAGA--A-GT---TGT 1193 Query 1284 AAAATTTTCTTGGG-AAGAAAA-CTCTGGTTTCTATCTTCTCGTTGTAATATAGATAATC 1341 |||||||||| ||| || |||| |||||||||||||||||||||||||||||||||||| Sbjct 1194 AAAATTTTCTCGGGGAAAAAAAACTCTGGTTTCTATCTTCTCGTTGTAATATAGATAATG 1253 Query 1342 AACTTGGATTTATCTTCTTTCAGA---T-TCA-C-C-ATTGTATATAGTAATGTTTA-TT 1393 || ||||||||||||||||||||| | ||| | | |||||||||||||||||||| || Sbjct 1254 AATTTGGATTTATCTTCTTTCAGAGAGTATCATCACCATTGTATATAGTAATGTTTAATT 1313 Query 1394 TT-T-CTTGGTGATTTCTAAGTTCTCTCTCACCTTTGTATAT 1433 || | ||| || | || ||||||||||||||||||||||| Sbjct 1314 TTCTTCTTCTTGGTGACTTAGTTCTCTCTCACCTTTGTATAT 1355 > Ahg477491 jgi|Araly1|477491|fgenesh2_kg.3__192__AT3G02555.1 Length=746 Score = 97.1 bits (52), Expect = 3e-19 Identities = 186/244 (76%), Gaps = 35/244 (14%) Strand=Plus/Plus Query 365 AAAAAGATGAATCATTGCAACCTTCAGCAGAACGCCTTCATGTCTCGTGAGGAGAT-GAT 423 ||||| ||||||||||| | |||||||||||||||||||||||||||||| || || || Sbjct 59 AAAAA-ATGAATCATTGTAGCCTTCAGCAGAACGCCTTCATGTCTCGTGACGA-ATCGA- 115 Query 424 G-GGATTTGA-CCGTAAGGATCTTGTTGTTTGTCCTAA-GC-CTC-GACGTGTTGGTT-T 477 | ||||||| || || ||| ||||| ||| || | ||| | || ||| | | Sbjct 116 GAGGATTTGTTCC-TA----TCTA-TTGTTA-TCC-AATGGACTCTGTTGT-TTG-TCCT 165 Query 478 A--C-TCG-C---C-AACAACGTTATTCGTCCTCTTAGATTACATATGAGTCAAGCTGCA 529 | | ||| | | ||||||||||||||||| |||||||||||| | |||||| | | | Sbjct 166 AAGCCTCGTCGTGCCAACAACGTTATTCGTCCCCTTAGATTACATTTTAGTCAATCAGGA 225 Query 530 GCCGACT--TGT--GTGATTCTAAAGCTGGTGCTGAGCTTTTGGAAATCATT-CGTAGAA 584 || || | ||| ||||||||||||| || | || |||||||| || ||| ||||||| Sbjct 226 GCTGA-TGATGTATGTGATTCTAAAGCCGGGGAAGATCTTTTGGACAT-ATTTCGTAGAA 283 Query 585 AGGA 588 |||| Sbjct 284 AGGA 287 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55154674760 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5