BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G16290.1 Length=1804 Score E Sequences producing significant alignments: (Bits) Value Ahg488480 jgi|Araly1|488480|fgenesh2_kg.6__1614__AT5G16290.2 2508 0.0 > Ahg488480 jgi|Araly1|488480|fgenesh2_kg.6__1614__AT5G16290.2 Length=1734 Score = 2508 bits (1358), Expect = 0.0 Identities = 1629/1752 (93%), Gaps = 50/1752 (3%) Strand=Plus/Plus Query 40 TCACCCAAAGTttctctctttctctcttc-tc--ct-tctGCTGTTTTCCGCCTCACACC 95 |||||||||||||| |||||||||||||| || || ||||||||||||||||||||||| Sbjct 1 TCACCCAAAGTTTCCCTCTTTCTCTCTTCTTCTTCTCTCTGCTGTTTTCCGCCTCACACC 60 Query 96 ATTACTCTCCCAGA-AATGGCGGCGACGACGACTGCTACTTCATTATTCTCATCTCGTCT 154 |||||||||||| | ||||||||||||| |||||||| ||||| || | || | | ||| Sbjct 61 ATTACTCTCCCA-ACAATGGCGGCGACGGCGACTGCTGCTTCACTA-T-TC--C-CATCT 114 Query 155 TCACTTCCAGAATCAGAATCAAGGTTATGGGTTTCCGGCGAAAACCCCCAACTCCCTGCA 214 | ||||||||||||||| | ||| |||||| |||||||||||||||||||||||| |||| Sbjct 115 T-ACTTCCAGAATCAGATTAAAGTTTATGGCTTTCCGGCGAAAACCCCCAACTCCGTGCA 173 Query 215 AGTAAATCAGATCATCGACGGGAGGAAGATGAGGAATGCCACTGTTCTCTCAGCTGCTTC 274 ||||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||| || Sbjct 174 AGTAACTCAAATCATCGACGGGAGGAAGATGAGAAATGCCACTGTTCTCTCTGCTGCCTC 233 Query 275 CACTGATAAAGCCATCACCACTGCTCAATCTGTAGCTCCGACGGCTTGTGATAGAGTAAG 334 ||| ||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||| Sbjct 234 CACCGATAAAGCCATCACCACCGCTCAATCTGTAGCTGCGACGGCTAGTGATAGAGTAAG 293 Query 335 GAGGCATACAATCTCGGTGTTTGTGGGCGATGAGAGCGGTATAATAAATAGAATTGCTGG 394 ||||||||| ||||||||||||||||| |||||||||||||||||||| | |||||||| Sbjct 294 GAGGCATACCATCTCGGTGTTTGTGGGTGATGAGAGCGGTATAATAAACCGGATTGCTGG 353 Query 395 AGTATTTGCTAGAAGGGGATACAATATTGAGTCCCTTGCCGTAGGATTGAATGAAGACAA 454 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 354 AGTGTTTGCTAGAAGGGGATACAATATTGAGTCCCTTGCCGTGGGATTGAATGAAGACAA 413 Query 455 GGCTCTGTTTACTATAGTTGTTCTTGGAACAGATAAAGTCTTGCAGCAAGTTGTAGAACA 514 ||||||||||||||| ||||||||||| ||||| ||||||||||| ||||| |||||||| Sbjct 414 GGCTCTGTTTACTATCGTTGTTCTTGGGACAGACAAAGTCTTGCAACAAGTCGTAGAACA 473 Query 515 GCTTAACAAGCTCGTCAATGTCATCAAGGTGGAAGATCTCTCCAAGGAGCCCCATGTAGA 574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 474 GCTTAACAAGCTCGTCAATGTCATCAAGGTGGAAGATCTCTCCAAGGAGCCCCATGTAGA 533 Query 575 ACGTGAGTTAATGCTCATTAAACTTAACGCTGATCCAAGCACCCGCTCAGAGATCATGTG 634 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 534 ACGTGAATTAATGCTCATTAAACTTAACGCTGATCCAAGCACCCGCTCAGAGATCATGTG 593 Query 635 GTTGGTGGATATCTTTAGAGCAAAAATCGTGGATACCTCAGAGCAATCTCTAACGATTGA 694 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 594 GTTGGTGGATATCTTTAGAGCAAAAATCGTGGATACCTCAGAGCACTCTCTAACGATTGA 653 Query 695 GGTAACTGGAGACCCTGGAAAAATGGTTGCACTAACGACAAACTTAGAGAAGTTTGGAAT 754 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 654 GGTAACTGGAGACCCAGGAAAAATGGTTGCACTAACGACAAACTTAGAGAAGTTTGGAAT 713 Query 755 AAAAGAAATTGCGAGAACAGGGAAGATTGCTCTGAGACGGGAAAAGATGGGAGAAACCGC 814 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 714 AAAAGAAATTGCAAGAACAGGGAAGATTGCTCTGAGACGGGAAAAGATGGGAGAAACCGC 773 Query 815 TCCGTTTTGGAGATTTTCAGCGGCATCATATCCACATCTTGTAAAGGAATCATC-TC--A 871 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| || | Sbjct 774 TCCGTTTTGGAGATTTTCAGCGGCATCATACCCACATCTTGTAAAGGAATCATCATCTCA 833 Query 872 TGAGACTGTTGCAGAGAAAACAAAACTAGCATTGACTGGAAATGGCAATGCATCATCCGG 931 ||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||| || Sbjct 834 TGAAACTGTTGCAGAGAAAACAAAGCTAGCATTGAATGGAAATGGCAATGCATCATCGGG 893 Query 932 GGGTGACGTTTATCCAGTGGAACCCTATAACGATTTCAAACCGGTCCTTGACGCTCATTG 991 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 894 GGGTGACGTTTATCCAGTGGAACCCTATAATGATTTCAAACCGGTCCTTGACGCTCATTG 953 Query 992 GGGAATGGTCTACGATGAAGATTCGAGCGGACTTCGGTCCCACACATTATCTTTACTTGT 1051 |||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 954 GGGAATGGTCTATGACGAAGATTCGAGCGGACTCCGGTCCCACACATTATCTTTACTTGT 1013 Query 1052 GGCCAACGTTCCCGGAGTTCTCAATCTAATAACTGGAGCTATCTCTAGAAGAGGTTATAA 1111 ||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| Sbjct 1014 GGCCAACGTTCCCGGTGTTCTCAATCTAATAACTGGAGCTATCTCCAGGAGAGGTTATAA 1073 Query 1112 CATCCAGAGTCTAGCTGTTGGTCCTGCTGAGAAAGAGGGCTTATCTCGGATTACAACAGT 1171 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1074 CATCCAGAGTCTAGCTGTTGGTCCTGCTGAGAAAGAGGGCTTATCTCGGATTACAACAGT 1133 Query 1172 TATTCCCGGAACTGATGAAAATATAGATAAATTGGTTAGGCAGCTCCAGAAGTTGATTGA 1231 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1134 TATCCCCGGAACTGATGAAAATATAGACAAATTGGTTAGGCAGCTCCAGAAGTTGATTGA 1193 Query 1232 TCTTCAGGAGATCCAAAATATAACGCACATGCCATTTGCGGAGCGAGAACTGATGCTCAT 1291 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1194 TCTTCAGGAGATACAAAATATAACGCACATGCCATTTGCGGAGCGAGAACTGATGCTCAT 1253 Query 1292 CAAAGTAGCTGCTGATACTTCTGCAAGGAGAGATGTTTTAGATATTGCTCAAGTTTTCCG 1351 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 1254 CAAAGTAGCTGCTGATACTTCTGCAAGGAGAGATGTTCTCGATATTGCTCAAGTTTTCCG 1313 Query 1352 TGCTAAAGCCATTGATGTCTCTGATCATACTATCACCCTTGAGGTTACAGGGGATCTCAG 1411 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1314 TGCTAAAGCCATTGATGTCTCTGATCATACTATCACCCTTGAGGTTACAGGGGATCTTAG 1373 Query 1412 AAAAATGTCTGCATTACAAACGCAGTTAGAGGCCTATGGAATCTGCGAGGTGGCTCGGAC 1471 ||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 1374 AAAAATGTCTGCACTACAAACGCAGTTAGAGGCCTATGGACTCTGCGAGGTGGCTAGGAC 1433 Query 1472 AGGAAGAGTGGCATTGGTAAGAGAATCTGGAGTGGATTCGACTTATCTTCGTGGATACTC 1531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1434 AGGAAGAGTGGCATTGGTAAGAGAATCTGGAGTGGATTCGACTTATCTTCGTGGATACTC 1493 Query 1532 TCTTCCTTTGTAGTTC------T-AGA-GA--GGA-CTTGCC-G--CA-AG--CTT-CAG 1573 |||||||||||||||| | ||| || ||| ||| | | || || ||| | | Sbjct 1494 TCTTCCTTTGTAGTTCCAAAGGTTAGATGAAAGGATCTT-CTTGTGCAGAGGACTTACCG 1552 Query 1574 T--GTCGTTCC-TGGAAACTAGTCAAAAGGACTGCACGTTGTTTCAGCATCTGTGATTGA 1630 | | ||| || | ||||||||||||||||||| |||||| ||||||||||| Sbjct 1553 CAAG-C-TTCAGTGTA--CTAGTCAAAAGGACTGCACATTGTTT-----TCTGTGATTGA 1603 Query 1631 TTGCTTCCTCACGAGTCATGGCGCTTCGAGTTGTTGTTATAGGAGGAGCTATTTTA-TGA 1689 ||||||||||||||| ||||||| || |||||||||||||||||||| || ||| | ||| Sbjct 1604 TTGCTTCCTCACGAGCCATGGCGTTTGGAGTTGTTGTTATAGGAGGACCTGTTT-AGTGA 1662 Query 1690 ACTAAAAATAAATAATTATCTTTGTTCCGTTAAATTAGTTTTGCATACTAATC--AAATG 1747 |||||||||||||||| || |||||||||||| |||||||||| ||||| || ||||| Sbjct 1663 ACTAAAAATAAATAATAATGTTTGTTCCGTTAGATTAGTTTTGAATACTTTTCTCAAATG 1722 Query 1748 TAGAACACTGTT 1759 |||||||||||| Sbjct 1723 TAGAACACTGTT 1734 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67724455610 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5