BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G16320.1 Length=1518 Score E Sequences producing significant alignments: (Bits) Value Ahg488485 jgi|Araly1|488485|fgenesh2_kg.6__1619__AT5G16320.1 1857 0.0 > Ahg488485 jgi|Araly1|488485|fgenesh2_kg.6__1619__AT5G16320.1 Length=1432 Score = 1857 bits (1005), Expect = 0.0 Identities = 1303/1440 (90%), Gaps = 48/1440 (3%) Strand=Plus/Plus Query 1 AAACAATGACGGCGAGTGAGACTATCGCCACCGCGATAAATCAGATTGATGAGAAGAAGG 60 ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct 1 AAACAATGACGACGACTGAGACTATCGCCACCGCGATAAATCAGATTGATGAGAAGAAAG 60 Query 61 AAAAGCTAAAGAAAGCTTTCGACGATCTTCAAGCTCATCGCTCTCTCCTTTCACCGTCTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 61 AAAAGCTAAAGAAAGCTTTCGACGATCTTCAAGCTCATCGCTCTCTCCTTTCACCGTCCT 120 Query 121 TCTCACTTTCCTGGTCTGAGATCGATTCTCACTTTTCCTCTCTCCAATCCTCCCTTGCTA 180 |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 121 TCTCTCTTTCCTGGTCTGAGATCGATTCTCACTTTTCCTCCCTCCAATCCTCCCTCGCTA 180 Query 181 GCCGTTTCCGCCTCCTCCACTCTACATCTCCTTTGGAACATGATTCGTATAGAATCGACG 240 |||||||||||||||||| |||||| |||||||| || ||||||||| |||| ||||| Sbjct 181 ACCGTTTCCGCCTCCTCCAATCTACAGCTCCTTTGCAAGATGATTCGTTTAGACTCGACA 240 Query 241 CTTCTGATGCAGGGAAATCGTCGTCTTCGGAGGAGGTATCGGAGCAACCCGTTGTTGAGC 300 ||||| | | | || || |||||||||||||||||||||||||||||||||| Sbjct 241 CTTCT-A--C-------T--TCTTCGTCGGAGGAGGTATCGGAGCAACCCGTTGTTGAGC 288 Query 301 CGGAGTTGAGAGCCTTGTGTGAGAAGATTGACGGAATTGGTTTGATTAAGTATTTGATTA 360 ||||||||| ||| |||||||||||||| |||||||||||||||| |||||||||||| Sbjct 289 CGGAGTTGATAGCGTTGTGTGAGAAGATGGACGGAATTGGTTTGAGCAAGTATTTGATT- 347 Query 361 GGAT--ATGGGATGATGAAACTCCTCTCAATCAGGAAGTTTCTGCAGCGATTCGTTACTC 418 | | |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 348 -GTTCAATGGGATGATGACGCTCCTCTCAATCAGGAAGTTTCTGCAGCGATTCGTTACTC 406 Query 419 TCCGGATACGGCGTCCATGGTGCTTGACGCGATTGAAGGTTCGAACTACACACCGTCATC 478 ||||||| ||||||||| | | | |||| | | |||| ||||| || Sbjct 407 TCCGGATCCGGCGTCCA-------T---G-G--TGAA----C---C-ACACTCCGTCGTC 445 Query 479 ATCGGGAAGATCATTCGATGTAAGGAGAGTTTTCGTTTTGTTAATGGAAGTTTTGATTGA 538 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 446 ATCGGGAAAATCATTCGATGTAAGGAGAGTTTTCGTTTTGTTAATGGAAGTTTTGATTGA 505 Query 539 GA-TCAATGCGAATATCACTGTTGATACGAGAAATAGAGCTAAGAAACTGGCTTACCATT 597 || | ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 506 GAGT-AATGCGAATATCACTGTTGATACGAGAAATAGAGCTAAGAAACTGGCTTACGGTT 564 Query 598 GGAAATCTAAGGTTGGTGTC-AAGCCTTTCGAGGCGTTAGTGTTTCTGCATTTGGTCGCA 656 ||||| | ||| | | | | ||||||||||||||||| |||||||||||||| |||||| Sbjct 565 GGAAAACGAAGATAGAT-ACTAAGCCTTTCGAGGCGTTGGTGTTTCTGCATTTAGTCGCA 623 Query 657 GCTTTTGAATTAGGATCAGAATTTGACACAGAGGAGCTTTCTGATTACGTTTTCATGATC 716 ||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 624 GCTTTTGAATTGGGATCAGAATTTAACTCAGAGGAGCTTTCTGATTACGTTTTCATGATC 683 Query 717 GCTAAGTATAAGCAAGCAACTTTGGTTTGTAACAAGATTGGTGTAGATAGGAAAAGAGTT 776 |||||||| || |||||||||| ||| ||||||||||||||| |||||||| ||||||| Sbjct 684 GCTAAGTACAAACAAGCAACTTCGGTGTGTAACAAGATTGGTTTAGATAGGGAAAGAGTC 743 Query 777 GGGAAACTCATCAAGACTCTCTTGGATTCTGGTAAACCAATTTTAGCAGTCAAATTCATG 836 |||| ||||||||||| ||| |||||||||| ||| |||| || ||||||||||||||| Sbjct 744 GGGACACTCATCAAGAAACTCATGGATTCTGGCAAATCAATCTTGGCAGTCAAATTCATG 803 Query 837 TATGAGTGTGGGATGACTGATGAATTTGAGCCAATCCCTGTTTTGAAATCTTACATTAAG 896 |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 804 TATGAGTGTGGGATGACTGATGAATTCGAGCCAATCTCTGTTTTGAAATCTTACATTAAG 863 Query 897 GACTGTAGAGAAGCTGCTCTTAGAGTTTGCGTGGAAGATAACTACTCT-CTCAAGTCGCA 955 |||| |||||||||||||||||||||||||||||| |||||||||||| | ||||||||| Sbjct 864 GACTCTAGAGAAGCTGCTCTTAGAGTTTGCGTGGAGGATAACTACTCTAC-CAAGTCGCA 922 Query 956 GAACGAAGCC-TCTGATAAAGAAGTCAGTGCCTTGAAACCATTGATCAAAATCATCAAAG 1014 |||||||||| | |||||||||||||||||| ||||| || ||||||||||||||||| Sbjct 923 GAACGAAGCCAT-TGATAAAGAAGTCAGTGCAATGAAAGCAGCGATCAAAATCATCAAAG 981 Query 1015 ATCAGAACCTTGAATCAGAGTTTACTCAGGAGAAAGTTGAGGAACGTGTAGAAGAGCTGG 1074 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 982 ATCAGAACCTTGAATCCGAGTTTACTCAGGAGAAAGTTGAGGAGCGTGTAGAAGAGCTGG 1041 Query 1075 AGAAAAATAAGGCATTGAGGAAACGCAACACGACTAATCCTCCCAAGCAAGAGCCACAGC 1134 |||| |||||||| |||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 1042 AGAAGTATAAGGCACTGAGGAAACGCAACACCACTAATCCTCCCAAGGAAGAGCCACAGC 1101 Query 1135 AAAAGGGGAAAAAGCGGACTAGAGACTGCAAAAATGGGTCACAAGTTCCAGTTCCGAGTC 1194 ||||||||||||| ||||| | |||||| |||||| |||||||||||| |||||||| Sbjct 1102 AAAAGGGGAAAAAACGGACGCGTGACTGC---AATGGGACACAAGTTCCAGCTCCGAGTC 1158 Query 1195 AGCAGCTACTTTCTAGACCAGAAGCTCTTCTTATGCCTGAGCATAGTCATCATGGCTTAC 1254 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1159 AGCAGCTACTTTCTAGACCAGAAGCTCTGCTTATGCCTGAGCATAGTCATCATGGCTTAC 1218 Query 1255 AGTTGAACCCTTATGGTCTTATGACCTCAGCATTTTCTGGTGTTGTTGTGAACCCATTAA 1314 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1219 AGTTGAACCCTTATGGTCTTATGACCTCAGCATTTTCTGGTGTTGTTGTGAACCCATTAG 1278 Query 1315 CTGGGCTCTTTGGTTCAGGTGCAACTCCTCAATCTCTTTACTATGCTCAGCAAACTGGAT 1374 | |||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||| Sbjct 1279 CCGGGCTCTTTGGTTCCGCTGCAACTCCTCAACCTCTTTACTATGCTCAGCAAACTGGAT 1338 Query 1375 ATGTGTTGCCGCCTCAATACCACCCGCCTTATTATTCTCAGTAGCTAGCTGCATCTCGAC 1434 ||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 1339 TTGTATTGCCGCCTCAATACCACCCACCTTATTATTCTCAGTAGCTAGCAGCATCTCGAC 1398 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56830645540 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5