BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G16350.1 Length=1658 Score E Sequences producing significant alignments: (Bits) Value Ahg488487 jgi|Araly1|488487|fgenesh2_kg.6__1621__AT5G16350.1 2172 0.0 Ahg488089 jgi|Araly1|488089|fgenesh2_kg.6__1223__AT5G12420.1 1580 0.0 Ahg350432 jgi|Araly1|350432|fgenesh1_pg.C_scaffold_6001025 165 1e-39 > Ahg488487 jgi|Araly1|488487|fgenesh2_kg.6__1621__AT5G16350.1 Length=1484 Score = 2172 bits (1176), Expect = 0.0 Identities = 1366/1456 (94%), Gaps = 19/1456 (1%) Strand=Plus/Plus Query 73 GAGAATGAAGAATGAGGAGGAGGAGCCGCTCAGCCCGATGGCTCGTGTATTCCAATCGCC 132 ||||||| |||| | ||||||||||||||||| |||||||| ||||| |||||||| || Sbjct 30 GAGAATGCAGAAAAATGAGGAGGAGCCGCTCAGTCCGATGGCGCGTGTGTTCCAATCACC 89 Query 133 GGACATAGACTTATGTGCCATCATCAACATTGGGTTCAAAACAAAAATTAATCCCGACGT 192 || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 90 GGGCATAGACTTATGTGCCATCATCAACATTGGTTTCAAAACAAAAATTAATCCCGACGT 149 Query 193 TGTTCTTGATGCTTTGAAGCAAAATGTTTACAAGCATCCTCGTTTCTCCAGCAAACTGTC 252 ||||||||||||||||||||||||||| |||||||| || || | | ||| Sbjct 150 TGTTCTTGATGCTTTGAAGCAAAATGTCTACAAGCA---TC----CT----C--A--GTC 194 Query 253 TGAAAATGGTGAAAAATGGATCGAGACCGAAGTCAATGTAGAAGATCATGTAATCGTACC 312 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 195 TGAAAATGGTGAAAAATGGATTGAGACCAAAGTCAATGTAGAAGATCATGTAATCGTACC 254 Query 313 ATACATAGATCCAGAAGATATATGTGAAGGTGGACAAAGCTTCGTCGATGATTATATCTC 372 |||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||| Sbjct 255 ATACATAGATCCAGAAGAGACATGTGAAGTTGGACAAAGCTTCGTCGATGATTATATCTC 314 Query 373 ACGTCTCACATTGATTCCTCTTGATAGATCAAGACCTTTGTGGGACATTCACATCCTTAA 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 315 ACGTCTCACATTGATTCCTCTTGATAGATCAAGACCTTTGTGGGACATTCACATTCTTAA 374 Query 433 TGTCAAAACCTCATATGCTGAAGCAGTCGGTGTAATAAGATTTAACCATGCGTTGGCAGA 492 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 375 TGTCAAAACCTCAGATGCTGAAGCAGTCGGTGTAATAAGATTTAACCATGCGTTGGCAGA 434 Query 493 TGGAATGTCCTTCATTTCCCTAGTTCTTGCATGTACCCATAAAACATCAAATCCTGACAT 552 ||||||||||||||||||||| || || |||||||||||||||||||||||||| ||||| Sbjct 435 TGGAATGTCCTTCATTTCCCTCGTGCTCGCATGTACCCATAAAACATCAAATCCAGACAT 494 Query 553 GTTGTCTACTGCTATTCCTTCGGTGAAACGGCGAAGCACGGTGTCACATAGCC-Taaaaa 611 |||| |||||||||||||||| ||||| ||||||||||| ||||||||||||| | |||| Sbjct 495 GTTGCCTACTGCTATTCCTTCCGTGAAGCGGCGAAGCACAGTGTCACATAGCCTTGAAAA 554 Query 612 aaaCCGGCTGGTTCTTAACGGCAATATTCACCATTGGTTCTACAATGAGACTAATTTGGA 671 ||| ||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct 555 AAA-TGGCAGGTTCTTAAGGGCAATATTCACCATTGGTTCTACAATGAGACTGATTTGGA 613 Query 672 ATACATTGGTAGATATGTTCTTGCTTTTTGCTACTATGTTGTTTCTGAAGGATACAAAAA 731 ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| | Sbjct 614 ATACATTGGTAGATATGTTCTTGCTTTTTGCGACTATGTTGTTTTTGAAGGATACAAATA 673 Query 732 CACCACTAAAAGGCGGTGCGAATGTCAGGAGCAATCCAAAGACATTTTATCACCGAAATA 791 | |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 674 CGCCACTAAAAGGCGGTGCGAATGTCAGGAGCAATCCAAAGAGATTCTATCACCGAAATA 733 Query 792 TCTCTCTAGATGACATTAAACTTATCAAGAACGCTATGAACATGACTATCAACGATGTTC 851 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 734 TCTCTCTAGATGACATTAAACTTATCAAGAACGCTATGAACATGACTATCAACGATGTTC 793 Query 852 TACTCGGAATTACACAAGCTGCTCTTTCTAGCTATTTGAACCGACGATATGAACACGAAA 911 ||||||||||||||||||| || |||||||||||||||||||||| ||| ||||| | | Sbjct 794 TACTCGGAATTACACAAGCCGCACTTTCTAGCTATTTGAACCGACAATACGAACAAGCCA 853 Query 912 ATAATAATGAGGAGGATGGAGTATTGACTTCATATACAAACAATCTTCCAGATCGAATAC 971 | ||||||||||||||||||| ||||||||||||| | ||||||||||| ||| | |||| Sbjct 854 AGAATAATGAGGAGGATGGAGCATTGACTTCATATCCGAACAATCTTCCGGATGGCATAC 913 Query 972 GATTTCGTGCAGGTTGTACGGTAAACCTAAGGTCAGACATCGGGTTCAAGCCTTTGGCAG 1031 ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 914 GATTTCGTGCAGGTTGTACCGTAAACTTAAGGTCAGACATCGGGTTCAAGCCTTTGGCAG 973 Query 1032 AAATGATGGTCAAGGATTCAAAATGCAGATGGGGAAACTACTTTAGCTTTATTATTTTAC 1091 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 974 AAATGATGGTCAAGGATTCAAAATGCAGATGGGGAAACTACTTTAGCTTTTTTATTTTAC 1033 Query 1092 CATTATCGATTAGTTTAGAAACCGATCCATTGGTTTATCTAAACAAATCCAAAGCTATGA 1151 | ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1034 CGTTATCGATTGGTTTAGAAACCGATCCATTGGTTTATCTAAAAAAATCCAAAGCTATGA 1093 Query 1152 TGGCTCGAACGAAGCACTCTTATCAAGCAGCTCTAACGTATTTTCTTATCAAAATATCCC 1211 ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1094 TGGCTCGAAAGAAGCACTCCTATCAAGCAGCTCTAACGTATTTTCTTATCAAAATATCCC 1153 Query 1212 TAAAAGTGTTAGGAGCTAAGGCAACGACATCATTATTCAATCAACACTTGATGAACATAA 1271 ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 1154 TAAAAGTGTTAGGAGCTAAGGCAACAACATCATTATTCATTCAACACTTGATGAACATAA 1213 Query 1272 CGACATGTGTTTCAAACGTTATGGGTCCTATGGAAGAAATCAGTTTCAATGGCCATCCTG 1331 | ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1214 CAACATGTGTTTCAAACGTTATGGGCCCTATGGAAGAAATCAGTTTCCATGGCCATCCTG 1273 Query 1332 TCGCTTACATTTCTCCAAGCTCTTATGGACACTCACATGCATTGTTGATACATTACACAA 1391 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1274 TCGCTTACATTTCTCCAAGCGCTTATGGACACTCACATGCATTGTTGATACATTACACAA 1333 Query 1392 GTTATGCTG-GTGAAATGACAATTACTATAACGGTTGATCCTACTGTAATACCGGATCCT 1450 ||||||||| | ||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1334 GTTATGCTGAG-GAAATGACAATCACGATAACGGTTGATCCTACTGTAATACCGGATCCT 1392 Query 1451 CACAAGATTTGTGATGATATGGAAGAATCACTGAAAACAATGAAAGCTGTTCTCTGGGAA 1510 |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1393 CACAAGATTTTTGATGATATGGAAGAATCACTGAAAACAATGAAAGCTGTTCTTTGGGAA 1452 Query 1511 AGAGGGTTACTCAAAG 1526 ||||| |||||| ||| Sbjct 1453 AGAGGTTTACTCTAAG 1468 Score = 54.7 bits (29), Expect = 2e-06 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 16 AACTTAATAAATAGCGTTGGAGAGAGAGA 44 ||||||||||||||||||||||||||||| Sbjct 1 AACTTAATAAATAGCGTTGGAGAGAGAGA 29 > Ahg488089 jgi|Araly1|488089|fgenesh2_kg.6__1223__AT5G12420.1 Length=1704 Score = 1580 bits (855), Expect = 0.0 Identities = 1282/1483 (86%), Gaps = 49/1483 (3%) Strand=Plus/Plus Query 66 GGGAAA-GGAGAATGAAGAATGAGGAGGAGGAGCCGCTCAGCCCGATGGCTCGTGTATTC 124 |||||| ||||||||| || | ||||||||||||||| ||||||||||| ||||||||| Sbjct 1 GGGAAAGGGAGAATGACTAACGGGGAGGAGGAGCCGCTTAGCCCGATGGCGCGTGTATTC 60 Query 125 CAATCGCCGGACATAGACTTATGTGCCATCATCAACATTGGG-TTCAAAACAAAAATTAA 183 |||||||||| |||||||||||||||| | | || || |||| |||||||| || ||||| Sbjct 61 CAATCGCCGGGCATAGACTTATGTGCCGTGACCATCA-TGGGTTTCAAAACCAAGATTAA 119 Query 184 TCCCGACGTTGTTCTTGATGCTTTGAAGCAAAATGTTTACAAGCATCCTCGTTTCTCCAG 243 ||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||| Sbjct 120 TCCCGACGTTGTTCTTGATGCCTTGAAGCAAAATGTCTCCAAGCATCCTCGTTTCTCCAG 179 Query 244 CAAACTGTCTGAAAATGGTGAAAAATGGATCGAGACCGAAGTCAATGTAGAAGATCATGT 303 || ||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 180 CATACTGTCTGATAATGGTGCAAAATGGATCGAGACCGAAGTTAATGTAGAAGATCATGT 239 Query 304 AATCGTACCATACATAGATCCAGAAGATATATGTGAAGGTGGACAAAGCTTCGTCGATGA 363 ||| |||||||||||||| |||||||| ||| |||||||||||||||||||| ||||||| Sbjct 240 AATTGTACCATACATAGACCCAGAAGAGATAGGTGAAGGTGGACAAAGCTTCATCGATGA 299 Query 364 TTATATCTCACGTCTCAC-ATTGATTCCTCTTGATAGATCAAGACCTTTGTGGGACATTC 422 |||||| ||||||||||| | ||||||||||||||||||||||||| ||||||||||||| Sbjct 300 TTATATGTCACGTCTCACGA-TGATTCCTCTTGATAGATCAAGACCCTTGTGGGACATTC 358 Query 423 ACATCCTTAATGTCAAAACCTCATATGCTGAAGCAGTCGGTGTAATAAGATTTAACCATG 482 |||||||||| |||||||||||| ||||||||||||| || | ||||||| | ||||| Sbjct 359 ACATCCTTAACGTCAAAACCTCAGATGCTGAAGCAGTTAGTTTTATAAGATCTCACCATT 418 Query 483 CGTTGGCAGATGGAATGTCCTTCATTTCCCT-AGTTCTTGCATGTACCCATAAAACATCA 541 |||||| ||||||||||||||| ||||| || | | || ||||||||||||||||||||| Sbjct 419 CGTTGGGAGATGGAATGTCCTTGATTTCTCTCA-TGCTCGCATGTACCCATAAAACATCA 477 Query 542 AATCCTGACATGTTGTCTACTGCTATTCCTTCGGTGAAACGGCGAAG-CACGGTGTCACA 600 |||| |||||||| || | |||||||||| | |||||||||| || |||| |||| || Sbjct 478 GATCCAGACATGTTTTCAAATGCTATTCCTCCCATGAAACGGCG-AGCCACGTTGTCGCA 536 Query 601 TAGCC-Taaaa-aaaaCCGGCTGGTTCTTAACG-GCAATATTCACCATTGGTTCTACAAT 657 |||| ||||| ||| ||||||||||| | | | ||||||||||||||||||||||| Sbjct 537 CAGCCTTAAAACCAAA--GGCTGGTTCTTGA-GATCGATATTCACCATTGGTTCTACAAT 593 Query 658 GAGACTAATTTGGAATAC-ATTGGTAGATATGTTCTTGCTTTTTGCTACTATGTTGTTTC 716 |||||| |||||||||| | | |||||||||| |||||||| || ||| |||||||| Sbjct 594 GAGACTGCTTTGGAATACAACT-ATAGATATGTTGTTGCTTTTGGCGACTGTGTTGTTTT 652 Query 717 TGAAGGATACAAAAACACCACTAAAAGGCGGTGCGAATGTCAGGAGCAATCCAAAGACAT 776 |||||||||||||||| |||||||||||||| ||| ||||||| | ||||||||||| || Sbjct 653 TGAAGGATACAAAAACGCCACTAAAAGGCGGGGCGGATGTCAGAAACAATCCAAAGAGAT 712 Query 777 TTTATCACCGAAATATCTCTCTAGATGACATTAAACTTATCAAGAACGCTATGAACATGA 836 |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 713 TTTATCACCGAATTATCTCTTTAGATGACATTAAACTTATCAAGAACGCTATGAACATGA 772 Query 837 CTATCAACGATGTTCTACTCGGAATTACACAAGC-TGCTCTTTCT-AGCTATTTGAACCG 894 ||||||||||||||||||| ||||||||| |||| | |||||||| | |||||||||||| Sbjct 773 CTATCAACGATGTTCTACTTGGAATTACAAAAGCCT-CTCTTTCTCA-CTATTTGAACCG 830 Query 895 ACGAT-ATGAACACGAAAATAATAATGAGGAGGATGGAGTATTGACTTCATATACA-AAC 952 || || |||| || ||| | | ||||||||||||| |||||| || ||| || ||| Sbjct 831 AC-ATTATGA-CAAGAAGA-AG----GAGGAGGATGGAGCATTGACATCGTAT-CAGAAC 882 Query 953 AATCTTCCAGATCGAATACGATTTCGTGCAGGTTGTACGGTAAACCTAAGGTCAGACATC 1012 |||||||| ||| ||||||||||||||| | |||||| ||||| ||||||||||||||| Sbjct 883 AATCTTCCTGATGGAATACGATTTCGTGTTGCTTGTACAGTAAATCTAAGGTCAGACATC 942 Query 1013 GGGTTCAAGCCTTTGGCAGAAATGATGGTCAAGGATTCAAAATGCAGATGGGGAAACTAC 1072 |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 943 GGGTTCAAGCCTTTGGCAGATATGATGGTGAAGGATTCAAAATGCAGATGGGGAAACTAC 1002 Query 1073 TTTAGCTTTATTATTTTACCATT-ATCGATTAGTTTAGAAACCGATCCATTGGTTTATCT 1131 || ||||||||| |||| ||||| | | || ||||| |||||||||||||||||||| | Sbjct 1003 TTCAGCTTTATTTTTTTGCCATTCACC-ATCGGTTTACAAACCGATCCATTGGTTTATTT 1061 Query 1132 AAACAAA-TCCAAAGCTATGATGGCTCGAACGAAGCACTCTTATCAAGCAGCTCTAACGT 1190 ||| || || ||| | ||||||||||||| ||||||||||||||| || |||||| || Sbjct 1062 AAA-AATGTCAAAATCCATGATGGCTCGAAAGAAGCACTCTTATCACGCGGCTCTAGTGT 1120 Query 1191 ATTTTCTTATCAAAATA-TCCCTAAAAGTGTTAGGAGCTAAGGCAAC-GACATCATTATT 1248 ||||| | |||||||| ||| |||||||||| || || |||||| | | || |||||| Sbjct 1121 ATTTTATCATCAAAATCGTCC-TAAAAGTGTTTGGCGCGAAGGCAGCAG-CAGAATTATT 1178 Query 1249 CAATCAACACT-TGATGAACATAACGACATGTGTTTCAAACGTTATGGGTCCTATGGAAG 1307 ||| || | ||| ||||| ||||||||||||||||||||| || || || ||||||| Sbjct 1179 TGATCGAC-CGGTGAGGAACACAACGACATGTGTTTCAAACGTCATTGGCCCCATGGAAG 1237 Query 1308 AAATCAGTTTCAATGGCCATCCTGTCGCTTACATTTCTCCAAGCTCTTATGGACACTCAC 1367 ||||||||||| ||||||||||||| ||||||| ||||||| ||||| |||||||||| Sbjct 1238 AAATCAGTTTCCGTGGCCATCCTGTCTCTTACATCGCTCCAAGTTCTTACGGACACTCAC 1297 Query 1368 ATGCATTGTTGATACATTACACAAGTTATGCTGG-TGAAATGACAATTAC-TATAACGGT 1425 ||||| |||||||||||| | |||||||| || | |||||| |||| | | | || | Sbjct 1298 ATGCAATGTTGATACATTTGATGAGTTATGC-GGATAAAATGATAATTTCGT-TGGCG-T 1354 Query 1426 -TGATCCTACTGTAATACCGGATCCTCACAAGATTTGTGATGATATGGAAGAATCACTGA 1484 ||||||||| || |||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 1355 ATGATCCTACCGTCATACCGGACCCTCACAAGATTTGCGATGATATGGAAGAATCACTGA 1414 Query 1485 AAACAATGAAAGCTGT-TCTCTGGGAAAGAGGGTTACTCAAAG 1526 || | ||||||||| | ||| || ||||||||||||||| ||| Sbjct 1415 AAGCGATGAAAGCT-TCTCTATGCGAAAGAGGGTTACTCTAAG 1456 > Ahg350432 jgi|Araly1|350432|fgenesh1_pg.C_scaffold_6001025 Length=957 Score = 165 bits (89), Expect = 1e-39 Identities = 133/154 (86%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 1370 GCATTGTTGATACATTACACAAGTTATGCTGGTGAA-ATGACAAT-TACTATAACGGTTG 1427 |||||| || | |||| || ||||||||| || ||| |||| ||| | | || |||||| Sbjct 802 GCATTGCTGGTGCATTTCATAAGTTATGC-GGAGAAGATGATAATCT-CGATGGCGGTTG 859 Query 1428 ATCCTACTGTAATACCGGATCCTCACAAGATTTGTGATGATATGGAAGAATCACTGAAAA 1487 |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 860 ATCCTACTGTCATACCAGATCCTCACAAGATTTGTGATGATATGGAAGAATCACTGAAAG 919 Query 1488 CAATGAAAGCTGTTCTCTGGGAAAGAGGGTTACT 1521 | |||||| || ||||||| |||||||||||||| Sbjct 920 CGATGAAAACTATTCTCTGTGAAAGAGGGTTACT 953 Score = 126 bits (68), Expect = 5e-28 Identities = 133/163 (82%), Gaps = 9/163 (6%) Strand=Plus/Plus Query 1076 AGCTTTATTATTTTACCATT-ATCGATTAGTTTAGAAACCGATCCATTGGTTTATCTAAA 1134 ||||||||| |||| || || | | || ||||||||||||||||||||||||||||||| Sbjct 647 AGCTTTATT-TTTTGCCGTTCA-CCATCGGTTTAGAAACCGATCCATTGGTTTATCTAAA 704 Query 1135 CAAA-TCCAAAGCTATGATGGCTCGAACGAAGCACTCTTATCAAGC-AGCTCTAACGTAT 1192 || || ||| | ||||||||||||| ||||||||||||||| || | ||||| ||| Sbjct 705 -AATGTCAAAATCCATGATGGCTCGAAAGAAGCACTCTTATCACGCGA-CTCTAGTATAT 762 Query 1193 TTTCTTATCAAAATA-TCCCTAAAAGTGTTAGGAGCTAAGGCA 1234 ||| | |||||||| | | |||||||||| || || |||||| Sbjct 763 TTTATCATCAAAATCGTTC-TAAAAGTGTTTGGCGCCAAGGCA 804 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62163279840 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5