BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16400.1
Length=887
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488494 jgi|Araly1|488494|fgenesh2_kg.6__1628__AT5G16400.1 1092 0.0
> Ahg488494 jgi|Araly1|488494|fgenesh2_kg.6__1628__AT5G16400.1
Length=730
Score = 1092 bits (591), Expect = 0.0
Identities = 690/735 (94%), Gaps = 17/735 (2%)
Strand=Plus/Plus
Query 7 AATTTGGAAATCAAAAGTC-TC-C-CA-GGT--TCCTTTGAAAGATCACACTACTGTTTT 60
||||||||||||||||||| || | || ||| ||||||||||||||||||||||| ||
Sbjct 1 AATTTGGAAATCAAAAGTCGTCTCTCAGGGTGGTCCTTTGAAAGATCACACTACTG--TT 58
Query 61 TTGGACTCGAGCTTCTTCTTCAACAATGCCTCTCTCTCTCCGACTTGCTCCATCTCCGAC 120
||||| ||||||||||||||| ||||||||||||||||| ||| | ||||||||||||||
Sbjct 59 TTGGAGTCGAGCTTCTTCTTCCACAATGCCTCTCTCTCTTCGAGTCGCTCCATCTCCGAC 118
Query 121 GTCTTTCCGTTATTCTCCGA-TTACATCTACCGGCGCCGGAGGATTTTCCCCCGTGAAGC 179
| ||||||||| ||||||| || ||||||||||||| | |||||| ||||||||||||
Sbjct 119 ATATTTCCGTTACTCTCCGACTT-CATCTACCGGCGCTGTCGGATTTCCCCCCGTGAAGC 177
Query 180 AGCACTGCCGGATCCCGAATTCGGGCGTCGCGACGAAAATTGGATTCTGTTCTGGTGGTG 239
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 178 AGCACTGCCGGATCCCGAATTCCGGCGTCGCGACGAAAATCGGATTCTGTTCTGGTGGTG 237
Query 240 GT-G-G-TGTTTTAGATTCCGGT-AGAAGGATTGGTTCCTGTGTGGTGAGGTGTAGCTTA 295
|| | | |||||||||||||||| || ||||||||||||| |||||||||||||||||||
Sbjct 238 GTGGTGATGTTTTAGATTCCGGTAAG-AGGATTGGTTCCTATGTGGTGAGGTGTAGCTTA 296
Query 296 GAAACAGTGAATGTCACTGTTGGCCAGGTGACGGAGGTTGATAAGGACACGTTCTGGCCA 355
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 297 GAAACAGTGAATGTCAGTGTCGGCCAGGTGACGGAGGTTGATAAGGACACGTTCTGGCCA 356
Query 356 ATTGTTAAAGCCGCCGGTGATAAGATTGTTGTCCTCGACATGTACACTCAGTGGTGTGGT 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ATTGTTAAAGCCGCCGGTGATAAGATTGTTGTCCTCGACATGTACACTCAGTGGTGTGGT 416
Query 416 CCTTGCAAAGTGATTGCTCCCAAATACAAAGAGCTATCGGAGAAGTACCAGGACATGGTG 475
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 417 CCTTGCAAAGTGATTGCTCCCAAGTACAAAGAACTATCGGAGAAGTACCAGGACATGGTG 476
Query 476 TTTCTTAAGCTTGATTGTAACCAAGACAACAAGCCATTGGCGAAAG-AGCTAGGAATTAG 534
|||||||||||||| || |||||||| |||||||||||||| |||| |||||||||||||
Sbjct 477 TTTCTTAAGCTTGACTGCAACCAAGAAAACAAGCCATTGGC-AAAGGAGCTAGGAATTAG 535
Query 535 AGTGGTTCCAACTTTTAAAATCTTGAAAGACAACAAGGTAGTAAAGGAAGTGACCGGGGC 594
|||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 536 AGTGGTTCCAACCTTTAAGATCTTGAAGGACAACAAGGTAGTAAAGGAAGTGACCGGGGC 595
Query 595 AAAATATGAAGACTTACTTGCAGCCATTGAAGCAGCAAGGTCAGGCTGAGTCTCTCTCTA 654
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 596 AAAATATGAAGACTTACTTGGAGCCATTGAAGCAGCAAGGTCAGGCTGAGTCTCTCTCTA 655
Query 655 TATCACTCATTATGTAAAGTATTAGGATCATTCTCCATCCATGTAATTCGTTTGGTTCTA 714
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 656 TATCACTCATTATGTAAAGTATTAGGATCATACTCCATCCATGTAATTGGTTTGGTTCTA 715
Query 715 TGTATGTAACTCTTT 729
|||||||||||||||
Sbjct 716 TGTATGTAACTCTTT 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32861954454
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5