BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G16540.1 Length=1497 Score E Sequences producing significant alignments: (Bits) Value Ahg488510 jgi|Araly1|488510|fgenesh2_kg.6__1644__AT5G16540.1 2104 0.0 Ahg477525 jgi|Araly1|477525|fgenesh2_kg.3__226__AT3G02830.1 416 2e-115 Ahg941150 jgi|Araly1|941150|scaffold_601694.1 211 1e-53 > Ahg488510 jgi|Araly1|488510|fgenesh2_kg.6__1644__AT5G16540.1 Length=1490 Score = 2104 bits (1139), Expect = 0.0 Identities = 1374/1483 (93%), Gaps = 34/1483 (2%) Strand=Plus/Plus Query 34 tctctctgctttctctctctagacgtgatctctaattctctaatgtctTCCTGCATTGCC 93 ||| ||||||||||||||||||||||| | |||||| |||||||||| ||||| | Sbjct 23 TCT-TCTGCTTTCTCTCTCTAGACGTG-----T--TTCTCT-ATGTCTTCCTCCATTGTC 73 Query 94 ATTTCCTCTAACCCCTCCACAATCGGAGGAAGACGATTCCTGGGAGCAAGAGAAACGATG 153 ||| ||||||| | ||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 74 ATTACCTCTAAACTCTCCACAATCGGAGGAAGACGATTCGTGGGAGGAAGAGAAACGATG 133 Query 154 GGACTTCCCATCGGAAAATCTCTTAGAGTGAG-AGAATTATGGTGTGTTCTTAATGCTTA 212 ||| ||||| |||||||||||| ||||||||| |||||||||| ||| |||||||||||| Sbjct 134 GGATTTCCCGTCGGAAAATCTC-TAGAGTGAGAAGAATTATGGCGTG-TCTTAATGCTTA 191 Query 213 ATAATCACCGACACAGCCATTGTTCTTCATCATCTCCATGGA--TT--TT---GA-TT-C 263 ||| |||| ||| |||||||||||| |||||||||||||||| || || || || | Sbjct 192 ATACTCACGGACGCAGCCATTGTTCGTCATCATCTCCATGGATTTTGATTCCAGAGTTCC 251 Query 264 CATTTCTCGGGAAAGCACTTTTCTTTCCCCATTGCTTAACCAAAATGCAATGTGGCAAAT 323 |||||| ||||||||||||| ||||||| | |||||||||||| |||||||||||||||| Sbjct 252 CATTTCACGGGAAAGCACTTCTCTTTCCACGTTGCTTAACCAAGATGCAATGTGGCAAAT 311 Query 324 GAACTTGGGATCAGATGATACAATGGGTGTTGATGGGTCTTATCCGGAACGTCACGGAGA 383 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 312 GAACTTGGGATCAGATGATACAATGGGTCTTGATGGGTCTTATCCGGAACGTCACGGAGA 371 Query 384 GCCAGATTGTGCTTATTATATAAGGACTGGACTTTGTAGGTTTGGTTCAACTTGCCGATT 443 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 372 GCCAGATTGTGCTTATTACATAAGGACTGGACTTTGTAGGTTTGGTTCTACTTGCCGATT 431 Query 444 CAATCATCCTCACGACCGGAAACTGGTTATAGCAACTGCAAGGATTAAAGGAGAATACCC 503 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 432 CAATCATCCCCACGACCGGAAACTGGTTATAGCAACAGCAAGGATTAAAGGAGAATACCC 491 Query 504 TGAAAGAATTGGTCAGCCTGAATGTGAGTTTTATCTGAAGACAGGGACCTGCAAATTCGG 563 |||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||| Sbjct 492 TGAAAGAATTGGGCAGCCTGAATGTGAGTTTTATCTTAAAACAGGAACCTGCAAATTCGG 551 Query 564 AGTGACTTGCAAGTTTCATCATCCTAGGAACAAAGCTGGTATTGATGGAAGTGTATCAGT 623 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 552 AGTGACTTGCAAGTTTCATCATCCTAGGAACAAAGCTGGGATTGATGGAAGTGTATCAGT 611 Query 624 TAATGTCTTAAGCTATCCTCTACGTCCGAACGAAGATGATTGCTCTTACTTTTTGAGAAT 683 |||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 612 TAATGTCTTAGGCTATCCTCTACGTCCAAACGAAGATGATTGTTCTTACTTTTTGAGAAC 671 Query 684 TGGACAATGTAAATTTGGGGGAACTTGTAAATTCAATCACCCTCAGACTCAATCAACCAA 743 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 672 TGGGCACTGTAAATTTGGGGGAACTTGTAAATTCAATCACCCTCAGACTCAATCAACCAA 731 Query 744 CTTGATGGTTTCTGTTCGTGGCTCTCCGGTTTACTCTGCTCTTCAATCTCTAAC---TGG 800 ||||||||||||| |||||||||||||||||||||||||||||||| ||| ||| ||| Sbjct 732 CTTGATGGTTTCTCTTCGTGGCTCTCCGGTTTACTCTGCTCTTCAACCTCCAACTGATGG 791 Query 801 TCAACCGTCTTATTCTTGGTCGAGAACATCTTTTGTTGCAAACCCTCCTCGTTTGCAAGA 860 ||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct 792 TCAACAGTCTTATTCTTGGCCGAGAACATCTTTTGTTGCAAACCCTCCTCGTTGGCAAGA 851 Query 861 TCCTTCTGGTTTCGCTTCAGGATCTCAAGGAGGTCTCTTCTCATCCGGGTTTCATTCGGG 920 ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct 852 TCCTTCTAGTTTCTCTTCAGGATCTCAAGGAGGTCTCTTCTCATCCGGGTTTCATTCAGG 911 Query 921 AAATTCTGTTCCGCTCGGGTTCTATGCATTACCTAGAGAGAATGTATTCCCGGAAAGACC 980 ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 912 AAACTCTGTTCCGCTCGGGTTCTATGCATTACCTAGAGAGAATGTATTCCCAGAAAGACC 971 Query 981 AGGCCAACCTGAATGCCAATTCTACATGAAGACAGGAGATTGCAAATTTGGAACAGTCTG 1040 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 972 AGGCCAACCTGAATGTCAATTCTACATGAAGACAGGAGATTGCAAATTTGGAACAGTCTG 1031 Query 1041 CAAATTTCATCATCCTAGAGACAGGCAAACCCCTCCTCCTGATTGTGTCTTAAGCTCGGT 1100 ||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||| || Sbjct 1032 CAAATTTCATCATCCAAGAGACAGACAAACCCCTGCTCCTGATTGTGTCTTAAGCTCTGT 1091 Query 1101 TGGCCTTCCTTTACGCCCGGGAGAACCACTGTGCGTGTTCTATTCTCGGTATGGGATCTG 1160 |||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 1092 TGGCCTCCCTTTACGCCAGGGAGAACCACTGTGCGTGTTCTATTCGCGGTATGGGATCTG 1151 Query 1161 CAAGTTTGGTCCAAGCTGTAAATTTGATCACCCGATGCGAGTCTTCACTTACAACAACAA 1220 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1152 CAAGTTTGGTCCAAGCTGTAAATTTGATCACCCGATGCGAGTCTTCACTTACAACAACAA 1211 Query 1221 T-ACTGCATCTCCTTCTCCTTCATCATCT-CTGCATCAAGAGACTGCAATCACCACAGAG 1278 | | ||||||||||||||||||||||||| | ||||||||||||||| ||||||||| || Sbjct 1212 TGA-TGCATCTCCTTCTCCTTCATCATCTTC-GCATCAAGAGACTGCCATCACCACACAG 1269 Query 1279 CTCAGGAATCTCCTAGTCTCTTCTTCTGTGGAAGCAAAACCCACATCACTCCCTGAAACA 1338 |||||||||||| ||||||||||||| |||||||||| ||||||| |||||||||||||| Sbjct 1270 CTCAGGAATCTCATAGTCTCTTCTTCAGTGGAAGCAACACCCACAACACTCCCTGAAACA 1329 Query 1339 ACCTCTGCTAAAGACACCATTGTTGATGCACAGCACTGAAAACC-CTGTGTTTTGTCTAT 1397 |||||||||||||| ||||||||| ||||||| |||||||| || || |||||||||| | Sbjct 1330 ACCTCTGCTAAAGAAACCATTGTTCATGCACAACACTGAAA-CCACTTTGTTTTGTCTGT 1388 Query 1398 CTTGAAACAATATGTAACATTTGTTTTGCTTTATCTTGTAAGCATTTATGTACAGAGATG 1457 |||||| ||| || |||||||||||||| ||||||| |||| |||||||||||||||||| Sbjct 1389 CTTGAA-CAACATTTAACATTTGTTTTGTTTTATCTCGTAAACATTTATGTACAGAGATG 1447 Query 1458 ATATCTGA--T-CTAATCTGATTCGCCTTTTGTTGTAATTTTC 1497 | | | | | || |||||||||||||||||||||||||||| Sbjct 1448 AGAAATTAACTTCTGATCTGATTCGCCTTTTGTTGTAATTTTC 1490 > Ahg477525 jgi|Araly1|477525|fgenesh2_kg.3__226__AT3G02830.1 Length=1649 Score = 416 bits (225), Expect = 2e-115 Identities = 396/478 (83%), Gaps = 13/478 (3%) Strand=Plus/Plus Query 281 CTTTTCTTTCCCCATTGCTTAACCAAAATGCAATGTGGCAAATGAACTTGGGATCAGATG 340 ||| |||||| || || | || ||| ||||||||||||||||||| ||| | ||||||| Sbjct 289 CTTCTCTTTCACCTTTAATGAATCAAGATGCAATGTGGCAAATGAATTTGAGTTCAGATG 348 Query 341 ATACAATGGGTGTTGA-TGGGTCTTATCCGGAACG-TCACGGAGAGCCAGATTGTGCTTA 398 | ||||| | | | ||| || || || ||||| || |||||||| |||||| |||| Sbjct 349 AAACAAT--G-G-AAACTGGTTCCTACCCTGAACGACCA-GGAGAGCCTGATTGTTCTTA 403 Query 399 TTATATAAGGACTGGACTTTGTAGGTTTGGTTCAACTTGCCGATTCAATCATCCTCACGA 458 ||| ||||| |||||||||||||| ||||| || ||||| || ||||||||||||| || Sbjct 404 TTACATAAGAACTGGACTTTGTAGATTTGGCTCTACTTGTCGGTTCAATCATCCTCGTGA 463 Query 459 CCGGAAACTGGTTATAGCAACTGCAAGGATTAAAGGAGAATACCCTGAAAGAATTGGTCA 518 ||| ||||||||||||| ||||||||||| | |||||| ||||||||||| |||||||| Sbjct 464 TCGGGAACTGGTTATAGCCACTGCAAGGATGAGAGGAGAGTACCCTGAAAGGATTGGTCA 523 Query 519 GCCTGAATGTGAGTTTTATCTGAAGACAGGGACCTGCAAATTCGGAGTGACTTGCAAGTT 578 ||||||||| |||| ||| |||||||||| |||||||| || ||||| || || ||||| Sbjct 524 GCCTGAATGCGAGTACTATTTGAAGACAGGAACCTGCAAGTTTGGAGTAACATGTAAGTT 583 Query 579 TCATCATCCTAGGAACAAAGCTGGTATTGATGGAAGTGTATCAGTTAATGTCTTAAGCTA 638 ||||||||||||||||||||||||||||| |||||| || || | ||| | ||| |||| Sbjct 584 TCATCATCCTAGGAACAAAGCTGGTATTGCTGGAAGAGTCTCTCTCAATATGTTAGGCTA 643 Query 639 TCCTCTACG-TCCGAACGAAGATGATTGCT-CTTACTTTT-TGAGAATTGGACAATGTAA 695 |||||| || || ||| |||| |||||| | |||| |||| | |||| ||||| ||||| Sbjct 644 TCCTCTCCGCTC-GAATGAAGTTGATTG-TGCTTA-TTTTCTAAGAACCGGACATTGTAA 700 Query 696 ATTTGGGGGAACTTGTAAATTCAATCACCCTCAGACTCAATCAACCAACTTGATGGTT 753 |||||| || |||||||||||||| ||||||||| ||||| |||||||| |||||||| Sbjct 701 ATTTGGTGGTACTTGTAAATTCAACCACCCTCAGCCTCAACCAACCAACATGATGGTT 758 Score = 329 bits (178), Expect = 3e-89 Identities = 273/319 (86%), Gaps = 6/319 (2%) Strand=Plus/Plus Query 906 CGGGTTTC-ATTCGGGAAATTCTGTTCCGCT---CGGGT-TCTATGCATTACCTAGAGAG 960 |||||||| || ||||| ||||||||| | |||| | |||||||| || || || Sbjct 1006 CGGGTTTCAATCCGGGATCCTCTGTTCCGATAGGAGGGTAT-TATGCATTGCCGAGGGAA 1064 Query 961 AATGTATTCCCGGAAAGACCAGGCCAACCTGAATGCCAATTCTACATGAAGACAGGAGAT 1020 ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| || Sbjct 1065 AATGTGTTCCCGGAAAGACCAGGACAACCCGAATGCCAATTCTACATGAAGACAGGTGAC 1124 Query 1021 TGCAAATTTGGAACAGTCTGCAAATTTCATCATCCTAGAGACAGGCAAACCCCTCCTCCT 1080 ||||||||||| ||||| ||||| ||||| |||||||||||||| ||| | ||||||||| Sbjct 1125 TGCAAATTTGGCACAGTTTGCAAGTTTCACCATCCTAGAGACAGACAAGCTCCTCCTCCT 1184 Query 1081 GATTGTGTCTTAAGCTCGGTTGGCCTTCCTTTACGCCCGGGAGAACCACTGTGCGTGTTC 1140 |||||| |||||||||| ||||||| |||||||||||||||||||| |||| |||||| Sbjct 1185 GATTGTCTCTTAAGCTCCATTGGCCTCCCTTTACGCCCGGGAGAACCGTTGTGTGTGTTC 1244 Query 1141 TATTCTCGGTATGGGATCTGCAAGTTTGGTCCAAGCTGTAAATTTGATCACCCGATGCGA 1200 ||| |||| ||||| |||||||| ||||||||||||||||||||||||||||| ||| || Sbjct 1245 TATACTCGATATGGAATCTGCAAATTTGGTCCAAGCTGTAAATTTGATCACCCAATGAGA 1304 Query 1201 GTCTTCACTTACAACAACA 1219 || ||| | ||| | |||| Sbjct 1305 GTATTCGCATACGAGAACA 1323 > Ahg941150 jgi|Araly1|941150|scaffold_601694.1 Length=190 Score = 211 bits (114), Expect = 1e-53 Identities = 153/171 (89%), Gaps = 5/171 (3%) Strand=Plus/Minus Query 1200 AGTCTTCACTTACAACAACAAT-ACTGCATCTCCTTCTCCTTCATCATCTCTGCATCAAG 1258 |||||||||||||||||||||| | |||| || || || ||||||||||||| || |||| Sbjct 179 AGTCTTCACTTACAACAACAATGA-TGCACCTTCTCCTTCTTCATCATCTCTACAACAAG 121 Query 1259 AGACTGCAATCACCACAGAGCTCAGGAATCTCCTAGTCT-CTTCTTCTGTGGAAGCAAAA 1317 ||||||| ||||||||| ||||||||||||||||||||| ||| ||| || ||||||| | Sbjct 120 AGACTGCCATCACCACACAGCTCAGGAATCTCCTAGTCTCCTTTTTC-GTAGAAGCAACA 62 Query 1318 CCCACATCACTCCCTGAAACAACCTCTGCTAAAGACACCATTGTTGATGCA 1368 |||||| ||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 61 CCCACAACACTCGCTGAAACAACCTCTGCTAAAGACACCATTGTT-ATGCA 12 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56030750395 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5