BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16650.1
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488524 jgi|Araly1|488524|fgenesh2_kg.6__1658__AT5G16650.1 634 0.0
Ahg903095 jgi|Araly1|903095|Al_scaffold_0003_223 387 1e-106
> Ahg488524 jgi|Araly1|488524|fgenesh2_kg.6__1658__AT5G16650.1
Length=743
Score = 634 bits (343), Expect = 0.0
Identities = 365/376 (97%), Gaps = 0/376 (0%)
Strand=Plus/Plus
Query 257 ATGGAAGACAATGATAAGTCTCCCCCTAAGGATTACTATAAGATTCTAGAAGTTGATTAC 316
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 48 ATGGAAGACAATGATAAGTCTCCCCCTAAGGATTACTATAAGATTCTAGAAGTTGATTAT 107
Query 317 GACGCAACTGAGGAATTGATCAGACTCAATTATCGGAAGCTTGCATTGAAGTGGCATCCT 376
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 108 GACGCAACTGAGGAATTGATCCGACTCAATTATCGGAAGCTTGCTTTGAAGTGGCATCCT 167
Query 377 GATAAGCACAAAGGCGATAGTGCAGCTACAGAAAAATTTCAAGAGATTAATGAAGCTTAT 436
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 168 GATAAGCACAAAGGCGATAGTGCAGCTACAGAAAAATTTCAAGAGATAAATGAAGCTTAT 227
Query 437 AATGTGCTGATGGACCCTGCTAAACGTTTTGAGTATGATTTCACTGGTATATATGAGATC 496
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 228 AATGTGCTGATGGACCCTACTAAACGTTTTGAGTATGATTTCACTGGTATTTATGAGATC 287
Query 497 CACAAATACACTTTACGGGAATATCTCGCCAGATTTAAGGGAATGATACTCACTTGCAAT 556
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 288 CACAAGTATACTTTACGGGAATATCTCGCCAGATTTAAGGGGATGATACTCACTTGCAAT 347
Query 557 GGGCTCGGTATCAGCCAATCCTCATCACCATGGACACATCAATTGGCTGAGACCACCAAA 616
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 348 GGGCTTGGTATCAGCCAATCCTCATCACCATGGACACATCAATTGGCGGAGACCACCAAA 407
Query 617 CAACAGACGAGCAAGG 632
||||||||||||||||
Sbjct 408 CAACAGACGAGCAAGG 423
Score = 414 bits (224), Expect = 5e-115
Identities = 262/279 (94%), Gaps = 7/279 (3%)
Strand=Plus/Plus
Query 632 GATACTGTATAAACTGAAGCAGAAGTTAGAAGAGGGCTGTAAAACTGTACAAAACTGGAG 691
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 468 GATACTGTATAAACTGAAGCAGAAGTTAGAAGAGATCTGTAAAACTGTACAAAACTGGAG 527
Query 692 CTATAGCGC-TTTTATCGCGCATTGATGATATAGTGAAATGCTTTGATTAGGTCTGTTGT 750
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 528 CTATAGCGCTTTTTATCGCGCATTGATGATATAGTGAAATGCTTTAATTAGGTCTGTTGT 587
Query 751 ATTGTTTCTTTATCAATGTAGAATTAGAGAAGCTTGTATTGTCTCTGGCTTCTATTAATA 810
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 588 ATTGTTTCTTTATCGATGTAGAATTAGAGAAGCTTGTATTGTCGATGGCTTCTATTCATA 647
Query 811 CATTCACACATTGGTGATGGTTCAAATCTTTTACCACTCTACTATTCTCATCATTCATGG 870
|||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 648 CATTCACACATTGGTGATGGTTCAAATCTTTTACTA-T--ACTATTCTCATCATTCATGG 704
Query 871 TTTT-CCAGACTTGAGACA-AA-GTGAATAATACAATCT 906
|||| |||||||| | ||| || ||||||||||||||||
Sbjct 705 TTTTTCCAGACTTTAAACATAAAGTGAATAATACAATCT 743
> Ahg903095 jgi|Araly1|903095|Al_scaffold_0003_223
Length=393
Score = 387 bits (209), Expect = 1e-106
Identities = 312/361 (86%), Gaps = 9/361 (2%)
Strand=Plus/Plus
Query 277 TCC-CCCTAAGGATTACTATAAGATTCTAGAAGTTGATTACGACGCAACTGAGGA-ATTG 334
||| ||| ||||||||||||||||| |||||||||||||| || |||||||| || | ||
Sbjct 15 TCCTCCC-AAGGATTACTATAAGATCCTAGAAGTTGATTATGATGCAACTGAAGAGA-TG 72
Query 335 ATCAGACTCAATTATCGGAAGCTTGCATTGAAGTGGCATCCTGATAAGCACAAAGGCGAT 394
|||| | | | |||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 73 ATCAAAGTGAGCTATCGGAAGCTTGCATTGAAGTGGCATCCTGATAAGCATAATGGTGAT 132
Query 395 AGTGCAGCTACAGAAAAATTTCAAGAGATTAATGAAGCTTATAATGTGCTGATGGACCCT 454
| || ||||| ||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 133 ACTGTGGCTACTTCAAAATTTCAAGAGATAAACGAAGCTTATAATGTGCTAATGGACCCT 192
Query 455 GCTAAACGTTTTGAGTATGATTTCACTGGTATATATGAGATCCACAAATACACTTTACGG 514
||| ||||||||||||||||||||| ||||| || |||||||||||||||||||| |||
Sbjct 193 GCTTTACGTTTTGAGTATGATTTCACCGGTATTTACGAGATCCACAAATACACTTTGCGG 252
Query 515 GAATATCTCGCCAGATTTAAGGGAATGATACTCACTTGCAATGGGCTCGGTATCAGCCAA 574
|||||||| || |||||||||||||||||||||||||||||||| || || ||||| ||
Sbjct 253 GAATATCTGGCTAGATTTAAGGGAATGATACTCACTTGCAATGGACTTGGCATCAGTCAC 312
Query 575 TCCTCATCACCATGGACACATCAATTGGCTGAGACCACCA-AACA--ACAGACGAGCAAG 631
|||||||||||||||||||| ||||||| || || | | |||| ||||| |||||||
Sbjct 313 TCCTCATCACCATGGACACAACAATTGG-TG-GAAGGCAATAACACTACAGATGAGCAAG 370
Query 632 G 632
|
Sbjct 371 G 371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33815027379
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5