BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16730.1
Length=2879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488531 jgi|Araly1|488531|fgenesh2_kg.6__1665__AT5G16730.1 3114 0.0
Ahg927786 jgi|Araly1|927786|scaffold_300243.1 699 0.0
> Ahg488531 jgi|Araly1|488531|fgenesh2_kg.6__1665__AT5G16730.1
Length=2745
Score = 3114 bits (1686), Expect = 0.0
Identities = 1971/2108 (94%), Gaps = 21/2108 (1%)
Strand=Plus/Plus
Query 293 ACTACTCCTACCGGGAAATCATCTCCAGCAACTCCAAGAATAGCAAAAAGAACAGTTAAT 352
|||||| |||| ||||||||| |||| ||||||||||||||||||||||| |||| |||
Sbjct 252 ACTACTACTACGGGGAAATCAACTCCCGCAACTCCAAGAATAGCAAAAAGGGCAGTGAAT 311
Query 353 AAATCCGAAACTAGTAATAATAATTC-TCCA-T-CTACTACTACTCCACATTCACGTCTT 409
||||||||||||||||||||| | | || | | ||||||||||||||||||||||||||
Sbjct 312 AAATCCGAAACTAGTAATAATTCTCCATCAACTACTACTACTACTCCACATTCACGTCTT 371
Query 410 TCTCTTGATCGTTCTTCTCCAAATTCCAA---ATCTTCTGTTGAGAGACGATCACCAAAG 466
||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 372 TCTCTTGATCGCTCTTCTCCAAATTCCAAGTCTTCTTCTGTTGAGAGACGATCTCCAAAG 431
Query 467 CTTCCAACTCCTCCTGAGAAATCTCAAGCGCGAGTAGCAGCGGTGAAAGGAACAGAATCA 526
||||||||||||||||||||| |||||||||| | | ||||||||||||||||||||||
Sbjct 432 CTTCCAACTCCTCCTGAGAAAACTCAAGCGCG-G--GTAGCGGTGAAAGGAACAGAATCA 488
Query 527 CCGCAGACGACCACACGGTTGAGTCAGATCAAGGAAGATTTGAAGAAAGCTAATGAGCGG 586
|||| | || | | ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 489 CCGC--A-GA-C-C-CGGTTGAGTCAAATCAAGGAAGATTTCAAGAAAGCTAATGAGCGG 542
Query 587 A-TATCTTCATTGGAGAAGGATAAAGCTAAAGCACTTGATGAACTCAAACAAGCTAAAAA 645
| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 543 ATTA-CTTCATTGGAGAAGGATAAAGCTAAAGCACTTGATGAACTCAAACAAGCCAAAAA 601
Query 646 AGAAGCTGAACAAGTGACTCTGAAGCTTGATGATGCTTTAAAAGCTCAGAAGCATGTGGA 705
|||||||||| ||| |||| ||||||| | ||||||||| ||||||||||| ||||| ||
Sbjct 602 AGAAGCTGAAGAAGCGACTGTGAAGCTGGTTGATGCTTTGAAAGCTCAGAAACATGTAGA 661
Query 706 GGAGAATTCTGAGATTGAAAAATTTCAGGCTGTTGAGGCAGGGATCGAGGCAGTTCAGAA 765
|||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 662 GGAGAATTCTGAGATTGAGAAGTTTCAGGCTGTTGAGGCGGGGATCGAGGCAGTTCAGAA 721
Query 766 CAATGAAGAAGAATTGAAGAAAGAACTTGAGACTGTTAAGAACCAACATGCTTCGGATTC 825
||||||||||||||||||||||||||| |||| |||||||||||||||||| || |||||
Sbjct 722 CAATGAAGAAGAATTGAAGAAAGAACTAGAGAGTGTTAAGAACCAACATGCATCAGATTC 781
Query 826 TGCTGCTCTTGTTGCGGTTAGACAGGAGCTTGAGAAAATCAATGAAGAATTGGCTGCGGC 885
|||||||||||| | ||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 782 AGCTGCTCTTGTTTCCGTTAGACTGGAGCTTGAGAAAATCAATGAAGAATTGGTTGCGGC 841
Query 886 TTTTGATGCTAAGA-GTAAGGCCTTGAGCCAAGCGGAGGATGCTAGTAAGACGGCTGAGA 944
||||||||||| | ||||||||||||||||| || |||||||||||||||||||| |
Sbjct 842 CAATGATGCTAAGACG-AAGGCCTTGAGCCAAGCAGATGATGCTAGTAAGACGGCTGATA 900
Query 945 TTCATGCAGAGAAAGTTGACATCTTGTCTTCGGAGTTAACGAGGTTGAAAGCTTTGCTTG 1004
||||||| ||||||||||||||||||||||||||||| || | ||||||||||||||||
Sbjct 901 TTCATGCGGAGAAAGTTGACATCTTGTCTTCGGAGTTGGCGCGCTTGAAAGCTTTGCTTG 960
Query 1005 ATTCAACCCGAGAGAAGACTGCCATATCGGATAACGAGATGGTTGCCAAGCTAGAAGACG 1064
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 961 ATTCAACCCGAGAAAAGACTGCCATATCGGGCAACGAGATGGTTGCCAAGCTAGAAGACG 1020
Query 1065 AGATTGTGGTTTTGAAAAGAGATCTTGAGTCAGCGAGAGGTTTTGAGGCAGAGGTTAAAG 1124
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1021 AGATTGTGGTTTTGAAAAGAGATCTTGAGAAAGCGAGAGGTTTCAAGGCAGAGGTTAAAG 1080
Query 1125 AAAAAGAGATGATCGTCGAGAAGCTTAATGTTGACCTTGAAGCTGCGAAGATGGCTGAGT 1184
|||||||| ||||| |||||||||||||||||||||| |||||| |||||||||| ||||
Sbjct 1081 AAAAAGAGGTGATCATCGAGAAGCTTAATGTTGACCTCGAAGCTTCGAAGATGGCAGAGT 1140
Query 1185 CTAATGCACACAGCTTGTCTAACGAGTGGCAGAGCAAAGCCAAAGAACTGGAGGAACAGC 1244
| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TTTATGCACACAACTTGTCTGACGAGTGGCAGAGCAAAGCCAAAGAACTGGAGGAACAGC 1200
Query 1245 TAGAAGAAGCTAACAAGTTGGAGAGGTCTGCTTCTGTATCTTTGGAATCTGTGATGAAAC 1304
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1201 TAGAAGAAGCTAACAAGTTGGAGAGATCTGCTTCTGTATCTTTGGAATCTGTGATGAAAC 1260
Query 1305 AGCTTGAAGGAAGCAATGATAAATTGCATGACACGGAAACTGAAATCACTGATCTTAAGG 1364
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1261 AGCTTGAAGGAAGCAATGATAAATTGCATGATATGGAAACTGAAATCACTGATCTTAAGG 1320
Query 1365 AGAGAATTGTGACATTGGAGACGACAGTTGCTAAACAAAAGGAGGATCTTGAGGTATCAG 1424
||| ||| |||||||||||||||||| |||||||||||||||||||||| |||| ||| |
Sbjct 1321 AGAAAATCGTGACATTGGAGACGACAATTGCTAAACAAAAGGAGGATCTCGAGGAATCTG 1380
Query 1425 AGCAACGGTTGGGCAGTGTagaagaagaagtatctaagaatgaaaaagaagtagagaagt 1484
|| ||||||||||||||| |||||||||| ||||||||| |||||||||||||||||| |
Sbjct 1381 AGAAACGGTTGGGCAGTGCAGAAGAAGAATTATCTAAGACTGAAAAAGAAGTAGAGAACT 1440
Query 1485 tgaagaGTGAGCTTGAGACTGTGAAGGAGGAGAAGAATCGTGCTTTGAAGAAGGAGCAAG 1544
|||||||||||||||| ||| ||||||||||||| ||||| ||||| |||||||||||||
Sbjct 1441 TGAAGAGTGAGCTTGAAACTTTGAAGGAGGAGAAAAATCGGGCTTTAAAGAAGGAGCAAG 1500
Query 1545 ATGCTACTTCAAGGGTTCAAAGGCTCTCAGAAGAGAAAAGCAAGCTCTTATCAGATTTAG 1604
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1501 ATGCTACTTCAAGAGTTCAAAGGCTCTCGGAAGAGAAAAGCAAGCTCTTATCAGATCTAG 1560
Query 1605 AGAGCTCAAAAGAGGAAGAGGAGAAGAGTAAGAAAGCAATGGAGAGTTTGGCTTCAGCTT 1664
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 1561 AGAGCTCAAAAGAGGAAGAGGAGAAGAGTAAGAAAGCGATGGAGAGTTTAGCTTCGGCTC 1620
Query 1665 TGCACGAAGTGTCGAGTGAAGGAAGGGAGTTGAAAGAGAAGTTGTTGAGTCAAGGCGATC 1724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 TGCACGAAGTGTCGAGTGAAGGAAGGGAGTTGAAAGAGAAGTTGTTGAGTCAAGGCGATC 1680
Query 1725 ACGAGTATGAAACACAAATAGATGACTTGAAGTTGGTGATTAAAGCCACAAACGAGAAGT 1784
||||||||||| |||||||||| ||||| |||||||| |||||||| || ||||||||||
Sbjct 1681 ACGAGTATGAATCACAAATAGAAGACTTAAAGTTGGTTATTAAAGCGACGAACGAGAAGT 1740
Query 1785 ACGAGAATATGCTTGACGAGGCGAGACATGAGATCGATGTTCTTGTTAGCGCGGTTGAAC 1844
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1741 ATGAGAATATGCTTGACGAGGCGAGACATGAGATCGATGTTCTTGTTAGCGCGGTCGAAC 1800
Query 1845 AAACCAAGAAACATTTCGAGAGCTCAAAGAAGGATTGGGAGATGAAAGAAGCCAATTTGG 1904
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1801 AAACCAAGAAACATTTCGAGAGCTCAAAGACGGATTGGGAGATGAAAGAAGCCAATTTGG 1860
Query 1905 TGAATTATGTGAAGAAAATGGAAGAAGATGTTGCTTCGATGGGGAAAGAAATGAATAGGC 1964
||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1861 TGAATTACGTGAAGAAAATGGAAGAAGACGTTGCTTCGATGGGGAAGGAAATGAATAGGC 1920
Query 1965 TGGATAATCTGCTGAAGAGAACCGAGGAAGAAGCCGATGCAGCTTGGAAGAAAGAAGCAC 2024
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1921 TAGATAATCTGCTGAAGAGAACCGAGGAAGAAGCCGATGCAGCTTGGAAGAAAGAAGCCC 1980
Query 2025 AGACGAAAGACAGTTTAAAAGAAGTGGAAGAAGAGATTGTTTATCTTCAGGAAACTCTCG 2084
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1981 AGACGAAAGACAGTTTAAAAGAAGTGGAAGAAGAGGTCGTTTATCTTCAGGAAACTCTCG 2040
Query 2085 GGGAAGCAAAAGCTGAAAGCATGAAGCTAAAGGAGAATCTGTTGGATAAAGAAACTGAGT 2144
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2041 GGGAAGCAAAAGCCGAAAGCATGAAGCTAAAGGAGAATCTGTTGGATAAAGAAACTGAGT 2100
Query 2145 TTCAGAACGTCATTCACGAAAACGAGGATCTGAAGGCGAAGGAGGATGTTTC-TCTGAAG 2203
|||| |||||||||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 2101 TTCAAAACGTCATTCACGAAAACGAGGATCTGAGGGCGAAGGAGGATGTTTCGT-TGAAG 2159
Query 2204 AAGATCGAGGAGTTATCGAAGTTACTCGAGGAAGCAATATTGGCCAAGAAGCAACCGGAA 2263
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 2160 AAGATCGAGGAGTTATCAAAGTTACTCGAGGAAGCAATATTGGCCAAGAAGCAACCTGAA 2219
Query 2264 GAAGAGAATGGCGAGCTCAGTGAGAGCGAGAAAGACTATGATTTGCTACCAAAAGTGGTT 2323
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2220 GAAGAGAATGGCGAGCTCAGTGAGAGCGAAAAAGACTATGATTTGCTACCAAAAGTGGTT 2279
Query 2324 GAGTTTTCTTCTGAGAACGGTCATAGAAGTGTAGAAGAGAAATCTGCTAAAGTCGAAACC 2383
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2280 GAGTTTTCTTCTGAGAACGGTCATAGAAGTGTAGAAGAGAAATCTCCTAAAGTCGAAACC 2339
Query 2384 CTTGATCA 2391
|||||||
Sbjct 2340 TTTGATCA 2347
Score = 560 bits (303), Expect = 2e-158
Identities = 374/405 (92%), Gaps = 18/405 (4%)
Strand=Plus/Plus
Query 2430 ATGGCAACGGTATGGAGGAGAAAGAAGTGAATGGAAAACCCGAGGTGGAAACCGAAAAGA 2489
|||| || ||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 2353 ATGGTAATGGTATGGAGGAGAAAGAAGTGAATGGAAAACCCGAGGCGGAAACCGAGAAGA 2412
Query 2490 AGGAGAAGAAAGATGAGTCCCAAGATGATGACAAAGATGATTCGGTTGAAGTTATATTCA 2549
|||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 2413 AGGAGAAGAAAGATGAATCCC----------C--AGATGATTCGGTTGAAGTTATATTCA 2460
Query 2550 AAATGTGGGAAAGTTGCCAAATCGAGAAGAAAGAAGCTTTTCCGGACAAGAAATCAGAAC 2609
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2461 AAATGTGGGAAAGTTGCCAAATCGAGAAGAAAGAAGCTTTTCCCGACAAGAAATCAGAAC 2520
Query 2610 TAGAGTCACAAGAAGAAGAAGAGGATTCAAGCAAAATCGATGAAAGCGACAAAACCTCAA 2669
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2521 TAGAGTCTCAAGAAGAAGAAGAGGATTCAAGCAAAATCGATGAAAGCGACAAAACCTCAA 2580
Query 2670 CAGAGAACATCGATGAAACCGGAAACGCTTTAACCGCAGAAGATCAGCTTACGATGGaga 2729
||||||||||||||||||| ||||||||||||||||| ||||| ||||||| ||||||||
Sbjct 2581 CAGAGAACATCGATGAAACAGGAAACGCTTTAACCGCCGAAGACCAGCTTATGATGGAGA 2640
Query 2730 agaagatcaagaagaagaagaCTTTACTTGGTAAAGTTGGGAATCTTCTCAAGAAGAAAG 2789
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2641 AGAAGATCAAGAAAAAGAAGACTTTACTTGGTAAAGTTGGGAATCTTCTCAAGAAGAAAG 2700
Query 2790 CACCTG------TAAACCAGAAATAACAAACTCTTCGAGGTAAGG 2828
|||| | |||||||||||||||||||||||||||||||||
Sbjct 2701 CACCCGCACCCGTAAACCAGAAATAACAAACTCTTCGAGGTAAGG 2745
Score = 167 bits (90), Expect = 5e-40
Identities = 105/111 (95%), Gaps = 6/111 (5%)
Strand=Plus/Plus
Query 40 TAGTGAGGCCACTCTGGAGACAACCACACCTGCCATTATCTATATCATTCTCCGTTACTT 99
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 TAGTGAGGCCACTCTGGAGACAACCACACCTGCCATTATCTAT--CATTCTCCGTTACTT 58
Query 100 CGATCCCACCGATTCGAATCAT-T---CTCTCTCTCTTTCTTGATCTGAAA 146
|||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 59 CGATCCCACCGATTCGAATCATATTGTCTCTCTCTCTTTCTTGATCTGAAA 109
> Ahg927786 jgi|Araly1|927786|scaffold_300243.1
Length=2074
Score = 699 bits (378), Expect = 0.0
Identities = 660/795 (83%), Gaps = 24/795 (3%)
Strand=Plus/Plus
Query 1604 GAGAGCTCAAAAGAGGAAGAGGAGAAGAGTAAGAAAGCAATGGAGAGTTTGGCTTCAGCT 1663
|||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 942 GAGAGCTCGAAGGAGGAAGAGGAGAAGAGTAAGAAAGCAATGGAGAGTTTAGCTTCAGCA 1001
Query 1664 TTGCACGAAGTGTCGAGTGAAGGAAGGGAGTTGAAAGAGAAGTTGTTGAGTCAAGGCGAT 1723
||||||||||||||||||||| | | ||||||||||| || ||| ||||||| || |||
Sbjct 1002 TTGCACGAAGTGTCGAGTGAATCACGCGAGTTGAAAGAAAAATTGCTGAGTCAGGGTGAT 1061
Query 1724 CACGAGTATGAAACACAAATAGATGA-CTTGAAGTTGGTGATTAAAGCCACAAACGAGAA 1782
|| || ||||||||||| ||||| || || ||||||||| |||||||| || ||| ||||
Sbjct 1062 CAGGATTATGAAACACAGATAGAAGATCT-GAAGTTGGTCATTAAAGCAACGAACAAGAA 1120
Query 1783 GTACGAGAATATGCTTGACGAGGCGAGACATGAGATCGATGTTCTTGTTAGCGCGGTTGA 1842
||| |||||||||||||| ||||||||||||||||||||||||||||| | ||||| ||
Sbjct 1121 GTATGAGAATATGCTTGATGAGGCGAGACATGAGATCGATGTTCTTGTCAATGCGGTAGA 1180
Query 1843 ACAAACCAAGAAACATTTCGAGAGCTCAAAGA-AGGATTGGGAGATGAAAGAAGCCAATT 1901
||||||||||||||| ||||| ||| ||| | || |||||||||||| ||||||| ||
Sbjct 1181 ACAAACCAAGAAACAGTTCGAAAGCGCAATGGTAG-ATTGGGAGATGAGAGAAGCCGGTT 1239
Query 1902 TGGTGAATTATGTGAAGAAAATGGAAGAAGATGTTGCTTCGATGGGGAAAGAAATGAATA 1961
|||||||| | |||||| || | || ||||| ||| |||| |||||||||||||||||||
Sbjct 1240 TGGTGAATCACGTGAAGGAATTTGATGAAGAAGTTTCTTCAATGGGGAAAGAAATGAATA 1299
Query 1962 GGCTGGATAATCTGCTGAAGAGAACCGAGGAAGAAGCCGATGCAGCTTGG-AAGAAAGAA 2020
|| ||| ||| || | || || || |||||||||| |||||| | ||| || ||||||
Sbjct 1300 GGTTGGGCAATTTGGTTAAAAGGACAAAGGAAGAAGCTGATGCATCATGGGAA-AAAGAA 1358
Query 2021 GCACAGACGAAAGACAGT-TTAAAAGAAGTGGAAGAAGAGATTG-TTTATCTTCAGGAAA 2078
| || | || ||| || ||||| ||||||||||| ||| | | |||||||||||||||
Sbjct 1359 TCCCAAATGAGAGATAGCCTTAAA-GAAGTGGAAGATGAGGT-GATTTATCTTCAGGAAA 1416
Query 2079 CTCTCGGGGAAGCAAAAGCTGAAAGCAT-GAAGCTAAAGGAGAATCTGTTGGATAAAGAA 2137
||||| ||||||| |||||||||| | | ||| ||||||| ||| ||||||||||||||
Sbjct 1417 CTCTCAGGGAAGCGAAAGCTGAAA-CTTTGAAACTAAAGGGGAAAATGTTGGATAAAGAA 1475
Query 2138 ACTGAGTTTCAGAA-CGTCATTCACGAAAACGAGGATCTGA-AGGCGAAGGAGGATGTTT 2195
||||||||||| || ||| |||| || ||||| || || | || ||| |||||| ||
Sbjct 1476 ACTGAGTTTCA-AAGCGTTGTTCATGAGAACGATGAACTCAGAGT-GAAACAGGATGATT 1533
Query 2196 CTCTGAAGAAGATCGAGGAGTTATCGAAGTTACTCGAGGAAGCAATATTGGCCAAGAAGC 2255
|||||||||||||| ||||| ||||| |||||||||| |||||| || | ||||||| |
Sbjct 1534 CTCTGAAGAAGATCAAGGAGCTATCGGAGTTACTCGAAGAAGCATTA--G-CCAAGAAAC 1590
Query 2256 A-ACCGGAAGAAGAGAATGGCGAGCTCAGTGAGAGCGAGAAAGACTATGATTTGCTACCA 2314
| || | |||| | || || |||||||||||||| || ||||||||||||||||| |||
Sbjct 1591 ATACAG-AAGA-G-GAC-GGTGAGCTCAGTGAGAGTGAAAAAGACTATGATTTGCTTCCA 1646
Query 2315 AAAGTGGTTGAGTTTTCTTCTGAGAACGGTCATAGAAGTGTAGAAGAGAAATCTGCTAAA 2374
|| ||||| ||||||||| || || ||| |||||| || ||||||||| ||| |||||
Sbjct 1647 AAGGTGGTCGAGTTTTCTGAGGAAAATGGTTATAGAAATGCAGAAGAGAAGTCTTCTAAA 1706
Query 2375 GTCGAAACCCTTGAT 2389
|| ||||||| |||
Sbjct 1707 GTAAAAACCCTCGAT 1721
Score = 108 bits (58), Expect = 3e-22
Identities = 215/285 (75%), Gaps = 33/285 (12%)
Strand=Plus/Plus
Query 2534 GTTGAAGTTATA-TTCAAAATGTGGGAAAGTTGCCAAATCGAGAAGAAAGAAGCTTTTCC 2592
||||||||| | || ||||||||||||||||| || || ||||||||||||| ||||||
Sbjct 1794 GTTGAAGTT-GAGTTTAAAATGTGGGAAAGTTGTCAGATTGAGAAGAAAGAAG-TTTTCC 1851
Query 2593 GGACAA--G-AAATCAGAACTAGAGTC-ACAAGAAGAAGAAGAGGATTCAAG-C-AAAAT 2646
|||| | ||| |||||| |||||| ||| |||||| ||||| ||| | |||
Sbjct 1852 --ACAAGGGAAAACCAGAACAAGAGTCTGCAA-AAGAAGTAGAGG----AAGACTTAAA- 1903
Query 2647 CGATGAAAGCGACAAAACCTCAACAGAGAACATCGATGAAACC-GGAAACGCTTTAACCG 2705
|| ||| | ||| ||| | |||| ||| || | || | ||| | |||||||
Sbjct 1904 CG-TGATA--GACCAAA--GC--CAGAAAACCTC---G---CCTGTAAATGGATTAACCG 1950
Query 2706 CAGAAGATCAGCTTACGATGG-agaagaagatcaagaagaagaagaCTTTACTTGGTAAA 2764
||||||| | || || || | | ||| | |||||||||||||| || ||||||||
Sbjct 1951 GAGAAGATGAACTGGTGAAGGAACAGGAA-AAGAAGAAGAAGAAGACATTGTTTGGTAAA 2009
Query 2765 GTTGGGAATCTTCTCAAGAAGAAAGCACCTGTAAACCAGAAATAA 2809
||||||||||||||||||||||||| ||| || || |||||||||
Sbjct 2010 GTTGGGAATCTTCTCAAGAAGAAAGGACCCGTGAATCAGAAATAA 2054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108671468985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5