BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G16780.1 Length=3061 Score E Sequences producing significant alignments: (Bits) Value Ahg488536 jgi|Araly1|488536|fgenesh2_kg.6__1670__AT5G16780.1 4481 0.0 > Ahg488536 jgi|Araly1|488536|fgenesh2_kg.6__1670__AT5G16780.1 Length=2945 Score = 4481 bits (2426), Expect = 0.0 Identities = 2813/2990 (94%), Gaps = 65/2990 (2%) Strand=Plus/Plus Query 1 GCAAAATCGTTCTCCTCTCTTCGCCACCAGAGAGTCTCTCCGTCTCTTTCCACGGCGAGT 60 ||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 1 GCAAAATTGTTCTCCTCTCTTGGCCACC--AGAGTCTCTCCGTCTCTTTCCACGGCGAGT 58 Query 61 TTGCGATCGTCCGCGGTTTGCTGTTTGTCGTCATCTCTCTCGTTTGAAGCATTCTTTTCT 120 ||||||||||||||||||||||||| ||||| |||||||||| ||||||||||| ||||| Sbjct 59 TTGCGATCGTCCGCGGTTTGCTGTTAGTCGTTATCTCTCTCGCTTGAAGCATTCCTTTCT 118 Query 121 AAA-TTCTTCGCAGTTGCTAGGTCTTTATCTTCTAAACCTTACTATTCGTCGGTGTGCTT 179 ||| ||||| |||||| ||||| |||||||||||||||||||||||||||| |||||||| Sbjct 119 AAATTTCTTGGCAGTTACTAGGGCTTTATCTTCTAAACCTTACTATTCGTC-GTGTGCTT 177 Query 180 TCGCAATTTATCTCTAAACCCTCGG-AAATTTCTCCTGCAATTCTGAGCTCTTTGTTCGT 238 ||||| ||| ||||||||||||||| |||||||||||||||||||| | ||||||| ||| Sbjct 178 TCGCAGTTTCTCTCTAAACCCTCGGAAAATTTCTCCTGCAATTCTGGGTTCTTTGTCCGT 237 Query 239 CGATCCGAATATT-CAGTACTTTCCATTGAAGGTTTGATCTAGAGGT-CTTGACTA-AAG 295 |||||| |||||| ||||||||||||||||||| ||||||||||||| || | || | Sbjct 238 CGATCCCAATATTGCAGTACTTTCCATTGAAGGCTTGATCTAGAGGTAATTCA-TAGGCG 296 Query 296 TTCTTGAAAATGGAAGTGGAGAAGTCTAAATCAAGGCATGAAATCAGGGAAGAGAGGGCT 355 || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 297 TT-TTGAAAATGGAAGTGGAGAAGTCTAAATCAAGGCATGAAAGCAGGGAAGAGAGGGCT 355 Query 356 GACTACGAGGGTTCGCCTGTTAGAGAACACAGAGATGGAAGGAGGAAAGAGAAGGATCAT 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 GACTACGAGGGTTCGCCTGTTAGAGAACACAGAGATGGAAGGAGGAAAGAGAAGGATCAT 415 Query 416 AGGAGCAAGGATAAAGAAAAGGACTATGATCGAGAAAAGATCAGGGATAAGGACCACCGC 475 |||||||||||| ||| | || | || | | ||||||||||||||||||| Sbjct 416 AGGAGCAAGGAT-----AAA-G---AT-A---AG---A-A-CAGGGATAAGGACCACCGC 457 Query 476 AGGGATaaggagaaagagagagaccgaaaaagaag-tagagatgaggacactgagaagga 534 |||||||||||||||||||||||||||||||| || |||||| | ||||||||| ||||| Sbjct 458 AGGGATAAGGAGAAAGAGAGAGACCGAAAAAG-AGATAGAGAAGGGGACACTGACAAGGA 516 Query 535 gatctctagaggtagagataaagagagggagaaagataagagtagagatcgggttaaaga 594 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 517 GATCTCTAGAGGTAGAGATAAAGAGAGGGAGAAAGATAAGACCAGAGATCGGGTAAAAGA 576 Query 595 aaaggacaaggaaaaggaaagaaatagacataaagatagagaaaatgagagggataacga 654 |||||| |||||||| |||||| |||||||||||||||| |||||||||||||||| || Sbjct 577 AAAGGAGAAGGAAAAAGAAAGAGATAGACATAAAGATAGGGAAAATGAGAGGGATAGTGA 636 Query 655 gaaggaaaaagaCAAGGATAGGGCAAGAGTCAAGGAGAGAGCGAGTAAGAAAAGTCATGA 714 |||||||||||||||||| || ||||||| ||||||||||| ||||||||||||||||| Sbjct 637 AAAGGAAAAAGACAAGGATCGGTCAAGAGTGAAGGAGAGAGCCAGTAAGAAAAGTCATGA 696 Query 715 AGATGATGACGAGACTCATAAAGCTGCAGAAAGATATGAACATTCTGACAACAGAGGTCT 774 ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 697 AGATGATCACGAGACTCATAAAGCTGCAGAAAGATATGAACATTTTGACAACAGAGGTCT 756 Query 775 GAATGAAGGTGGCGATAATGTTGATGCTGCATCAAGTGGGAAAGAAGCATCTGCGTTGGA 834 ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 757 GAATGAAGGTGACGATAATGTTGATGCTGCATCAAGTGGGAAAGAAGCATCTGCCTTGGA 816 Query 835 CCTTCAGAATCGCATTTTGAAGATGAGAGAGGAAAGAAAGAAGAAAGCTG-A-A------ 886 |||||||||||||||||||||||||||||||||||||||||||||| || | | Sbjct 817 ACTTCAGAATCGCATTTTGAAGATGAGAGAGGAAAGAAAGAAGAAAGTTGAAGATGCTTC 876 Query 887 -GATGCTTCTGATGCTCTATCATGGGTTGCAAGGAGCCGTAAGATTGAGGAAAAACGAAA 945 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 877 TGATGCTTCTGATGCTCTATCATGGGTTGCAAGGAGCCGTAAGATTGAGGAAAAAAGAAA 936 Query 946 TGCTGAGAAGCAAAGAGCACAGCAGCTCTCGAGAATTTTTGAGGAGCAGGACAATCTTAA 1005 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 937 TGCTGAGAAGCAAAGAGCTCAGCAGCTCTCGAGAATTTTTGAGGAGCAGGACAATCTTAA 996 Query 1006 TCAAGGTGAAAATGAAGATGGCGAGGATGGCGAGCATCTATCTGGTGTTAAAGTTCTACA 1065 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 997 TCAAGGTGAAAATGAAGATGGCGAGGATGGCGGGCATCTATCTGGTGTTAAAGTTCTACA 1056 Query 1066 TGGTTTGGAGAAAGTGGTGGAAGGTGGAGCAGTTATCTTGACACTAAAAGACCAAAGTGT 1125 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1057 TGGTTTGGATAAAGTGGTGGAAGGTGGAGCAGTTATCTTGACACTAAAAGACCAAAGTGT 1116 Query 1126 CCTTACCGATGGAGACGTTAACAATGAGATTGACATGCTAGAAAATGTGGAAATTGGAGA 1185 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1117 CCTTGCCGATGGTGACGTTAACAATGAGATTGACATGCTAGAAAATGTGGAAATTGGAGA 1176 Query 1186 ACAGAAGCGCCGGAATGAAGCTTATGAAGCAGCCAAGAAGAAAAAGGGAATATACGATGA 1245 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1177 ACAGAAGCGTCGGAATGAAGCTTATGAAGCAGCCAAGAAGAAAAAGGGAATATATGATGA 1236 Query 1246 TAAGTTTAATGATGATCCCGGGGCAGAAAAGAAGATGCTTCCTCAGTACGATGAGGCTGC 1305 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1237 TAAGTTTAATGATGATCCCGGGGCAGAAAAGAAGATGCTTCCGCAGTACGATGAGGCTGC 1296 Query 1306 TACTGATGAGGGGATCTTTTTGGATGCAAAGGGTCGCTTCACCGGTGAAGCTGAGAAGAA 1365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1297 TACTGATGAGGGGATCTTTTTGGATGCAAAGGGTCGCTTCACCGGTGAAGCTGAGAAGAA 1356 Query 1366 GCTAGAGGAGCTGCGTAAGAGAATTCAGGGTCAGACGACACATACTTTTGAAGACCTTAA 1425 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1357 GCTAGAGGAGCTGCGTAAGAGAATTCAGGGTCAGACGACAAATACTTTTGAAGACCTTAA 1416 Query 1426 CTCCTCAGCAAAGGTCTCTTCAGATTACTTCTCACAGgaagaaatgctaaaattcaaaaa 1485 |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 1417 CTCCTCAGCAAAGGTCTCTTCAGATTACTTCTCACATGAAGAAATGCTACGGTTCAAAAA 1476 Query 1486 acccaagaaaaagaaacaattgcgtaaaaaggataaatTGGACTTAAGTATGCTTGAAGC 1545 |||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||| Sbjct 1477 ACCCAAGAAAAAGAAACAATTGCGGAAAAAGGATAAATTGGACTTAAGTGTGCTGGAAGC 1536 Query 1546 AGAAGCTGTTGCATCGGGATTGGGAGCTGAAGATCTTGGTTCTCGTAAAGATGGCAGAAG 1605 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1537 AGAAGCTGTTGCATCGGGATTTGGAGCTGAAGATCTTGGTTCTCGTAAAGATGGCAGAAG 1596 Query 1606 GCAGGCCATGAAAGAAGAGAAAGAAAGGATCGAGTATGAAAAACGGAGCAATGCCTATCA 1665 ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 1597 GCAGGCCATGAAAGAAGAGAAAGAAAGGAACGATTATGAAAAACGGAGCAATGCCTATCA 1656 Query 1666 GGAAGCCATTGCTAAAGCTGATGAGGCATCCAGGCTACTTAGAAGGGAACAAGTTCAGCC 1725 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 1657 GGAAGCCATTGCTAAAGCTGATGAGGCATCCAGACTACTCAGAAGGGAACAAGTTCAGCC 1716 Query 1726 TTTTAAAAGAGATGAAGATGAGAGTATGGTGTTGGCTGATGATGCTGAAGATCTTTACAA 1785 | |||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1717 TATTAAAACAGACGAAGATGAGAGTATGGTGTTGGCCGATGATGCTGAAGATCTTTACAA 1776 Query 1786 ATCGTTAGAGAAAGCTAGGAGGCTAGCTCTCATTAAGAAAGAGGAAGCTGGATCTGGTCC 1845 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1777 ATCGTTAGAGAAAGCTAGGAGGTTAGCTCTCATTAAGAAAGAGGAAGCTGGATCTGGTCC 1836 Query 1846 ACAGGCAGTTGCGCATCTTGTGGCTTCCAGCACCAATCAAACAACAGATGATAATACCAC 1905 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1837 ACAGGCAGTTGCGCATCTTGTGGCTTCCAGCACCAATCAAACAACAGATGATAATAGCAC 1896 Query 1906 CACCGGGGATGAGACACAAGAAAATACAGTGGTTTTTACAGAGATGGGAGACTTTGTCTG 1965 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1897 CACCGGGGATGAGACACAAGAAAATACCGTGGTTTTTACAGAGATGGGAGACTTTGTCTG 1956 Query 1966 GGGTCTCCAGCGCGAGAACGATGTGCGGAAGCCTGAAAGTGAAGATGTTTTCATGGAAGA 2025 |||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| Sbjct 1957 GGGTCTCCAGCGCGAGAAAGATGTGCAAAAGCCTGAAAGCGAAGATGTTTTCATGGAAGA 2016 Query 2026 AGATGTAGCACCCAAAGCTCCCGTTGAAGTAAAAGAAGAGCATCCTGATGGTTTGACAGA 2085 ||||||||||||||||||||| |||||||||||||||||||| || ||||||| |||||| Sbjct 2017 AGATGTAGCACCCAAAGCTCCTGTTGAAGTAAAAGAAGAGCACCCCGATGGTTGGACAGA 2076 Query 2086 AGTAAATGACACTGATATGGATGCAGCAGAGGATTCATCAGATACCAAAGAGATAACACC 2145 |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 2077 AGTAAAAGACACTGATATGGATGCAGCAGAGGATTCATCAGACACCAAAGAGATAACTCC 2136 Query 2146 TGATGAAAATATACACGAGGTTGCGGTTGGAAAAGGATTATCTGGTGCATTGAAGCTTCT 2205 |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2137 TGATGAAACTATACACGAGGTTGCTGTTGGAAAAGGATTATCTGGTGCATTGAAGCTTCT 2196 Query 2206 TAAAGACCGAGGAACCCTAAAGGAGAAGGTCGAATGGGGTGGTAGAAATATGGACaaaaa 2265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2197 TAAAGACCGAGGAACCCTAAAGGAGAAGGTCGAATGGGGTGGTAGAAATATGGACAAAAA 2256 Query 2266 aaaGAGCAAGCTTGTGGGTATTGTGGATGATGATGGAGGTAAAGAATCTAAGGATAAAGA 2325 ||||||||||||||||||||||||||||||||| ||| | | | |||||| Sbjct 2257 AAAGAGCAAGCTTGTGGGTATTGTGGATGATGA---AGG-A--G-------G--TAAAGA 2301 Query 2326 ATCTAAGGATAGATTCAAGGACATCCGGATTGAGAGGACTGACGAGTTTGGTAGAACTTT 2385 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2302 ATCTAAGGATAGATTCAAGGACATCCGGATTGAAAGGACTGACGAGTTTGGTAGAACTTT 2361 Query 2386 AACTCCAAAAGAAGCCTTTCGACTACTCTCGCACAAATTCCACGGGAAGGGGCCTGGAAA 2445 |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 2362 AACTCCAAAAGAAGCCTTTCGATTACTCTCTCACAAATTCCACGGGAAGGGGCCTGGAAA 2421 Query 2446 AATGAAGGAAGAGAAACGGATGAAACAGTACCAGGAAGAGCTCAAGTTAAAGCAAATGAA 2505 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2422 AATGAAGGAAGAGAAACGTATGAAACAGTACCAGGAAGAGCTCAAGTTAAAGCAAATGAA 2481 Query 2506 AAACTCAGACACACCATCGCAGTCTGTTCAAAGAATGAGAGAAGCTCAAGCTCAATTGAA 2565 ||| |||||||||||||| || |||||||||||||||||||||||||||||||| ||||| Sbjct 2482 AAATTCAGACACACCATCTCAATCTGTTCAAAGAATGAGAGAAGCTCAAGCTCAGTTGAA 2541 Query 2566 AACTCCTTACCTTGTCCTCAGTGGCCATGTCAAACCAGGACAAACCAGTGATCCTCAGAG 2625 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2542 AACTCCTTACCTTGTCCTCAGTGGCCATGTCAAACCAGGACAAACTAGTGATCCTCAGAG 2601 Query 2626 TGGGTTTGCGACTGTTGAGAAGGATGTTCCTGGAAGCTTAACACCAATGCTTGGTGACAG 2685 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 2602 TGGGTTTGCGACTGTTGAGAAGGATGTTCCTGGAAGCTTAACACCAATGCTTGGGGACAA 2661 Query 2686 AAAGGTGGAGCATTTCTTGGGAATAAAGCGGAAATCAGAGCCCGGAAACTCGGATACACC 2745 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 2662 AAAGGTGGAGCATTTCTTGGGAATAAAGCGGAAATCGGAGCCTGGAAACTCGGATACACC 2721 Query 2746 ACCAAAGAGACCAAAGCCTTGAAGGACACTTTT--A-G-ATAATCAAAAGGTCTTGCTTG 2801 ||||||||||||||||||||||||||||||||| | | ||||||||||| |||| |||| Sbjct 2722 ACCAAAGAGACCAAAGCCTTGAAGGACACTTTTCGATGGATAATCAAAAGCTCTTACTTG 2781 Query 2802 CGTCTTTGTTTCACATTGATTTGTCTCTGGTAAACTCTTTT-TCAGGATTTGTTAGTCTT 2860 ||||||| || ||||||||| |||||||| ||||| |||| |||||||| ||||||||| Sbjct 2782 CGTCTTTCCTTGACATTGATTGGTCTCTGGGAAACT-TTTTCTCAGGATTAGTTAGTCTT 2840 Query 2861 TAGAAGAAGACATAGCTCGCTCATTATATAGATTCATGCTGCTGAGACTGATGATATTTT 2920 ||||| |||||| ||||| ||| ||||||||||||||||| |||||||||||||||| Sbjct 2841 TAGAAAAAGACA--GCTCGATCAATATATAGATTCATGCTG---AGACTGATGATATTTT 2895 Query 2921 GATGAAGTTGCCAAAACCGGTATGGGTTTGGTTTCAGTTCTGTAATCAAA 2970 | |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2896 GCTGAAGTTGCCAAAACCGGCATGGGTTTGGTTTCAGTTCTGTAATCAAA 2945 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 115603893575 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5