BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G16840.2
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488545 jgi|Araly1|488545|fgenesh2_kg.6__1679__AT5G16840.2 1858 0.0
> Ahg488545 jgi|Araly1|488545|fgenesh2_kg.6__1679__AT5G16840.2
Length=1143
Score = 1858 bits (1006), Expect = 0.0
Identities = 1102/1148 (96%), Gaps = 8/1148 (1%)
Strand=Plus/Plus
Query 1 ACACGTTGAGTGTGAGGTGTCATATAAAGCAAAATACACTCTTCCCTCTCTATCTATCTA 60
|||||||||||| | |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1 ACACGTTGAGTGCGCGGTGTCATATAAAGCAAAATACACTCTTCCCTCTCTCTCTA--TA 58
Query 61 CGCATCATCGATCTCGAAGTACGTTTCGGTTTTCAGGCCAATCTCTGAATCTGCGTGAC- 119
||||||||| ||||||||| | ||||||||||| ||||| |||||||||||||||||||
Sbjct 59 CGCATCATCAATCTCGAAGCAAGTTTCGGTTTTTAGGCCGATCTCTGAATCTGCGTGACA 118
Query 120 -AAAAGCAACAAATTACATATCTCTCTCTCTGCGCGACTTCGAAGATCAACATCCATGGC 178
|||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 119 AAAAAGCAAGAAATTACATATCTCTCTCTCT--GCGACTTCGAAGATCAAAATCCATGGC 176
Query 179 GTCACAGGTAAGGTCAGTAAAAGTTGGCAATCTCTCTTCAGGAGCAACTGAGCATGATAT 238
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GTCACAGATAAGGTCAGTAAAAGTTGGCAATCTCTCTTCAGGAGCAACTGAGCATGATAT 236
Query 239 TAAAGAGTTTTTCTCTTTCTCTGGTGAAGTTGAAAGCATCGATATCCAAAGCAGTAACGA 298
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 237 AAAAGAGTTTTTCTCTTTCTCTGGTGAAGTTGAAAGCATTGACATCCAAAGCAGTAACGA 296
Query 299 GCATAGTGCTTATGTCACATTTAAAGAAACTCAAGGAGCAGAGACTGCTGTGCTCTTATC 358
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 297 GCATAGTGCTTATGTCACATTTAAAGAAACTCAAGGTGCAGAGACTGCTGTGCTCTTATC 356
Query 359 TGGAGCGAGTATTGCCGATCAATCAGTCATCATTGAGTTGGCTCCCAACTACAGTCCACC 418
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 357 TGGAGCAAGTATTGCCGATCAATCAGTCATCATTGAGATGGCTCCCAACTACAGTCCACC 416
Query 419 AGCAGCCCCTCATGCTGAAACACAGAGCAGCGGTGCAGAATCTGTTGTCCAGAAGGCAGA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AGCAGCCCCTCATGCTGAAACACAGAGCAGCGGTGCAGAATCTGTTGTCCAGAAGGCAGA 476
Query 479 AGATGTTGTGAGCAGCATGTTAGCAAAGGGTTTCATTCTTGGGAAAGATGCTGTCGGCAA 538
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 477 AGATGTTGTGAGCAGCATGTTAGCAAAGGGTTTCATTCTTGGGAAAGATGCGGTCGGCAA 536
Query 539 AGCAAAAGCTTTTGATGAGAAACATGGTTTCACCTCAACCGCCACCGCAGGAGTTGCTTC 598
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 537 AGCAAAAGCTTTTGATGAGAAACATGGTTTCACTTCAACTGCAACCGCAGGAGTTGCTTC 596
Query 599 ACTAGACCAAAAAATCGGTCTTAGCCAGAAACTTACAGCTGGAACAAGCTTGGTGAACGA 658
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 597 ACTAGACCAAAAAATCGGTCTAAGCCAGAAACTTACAGCTGGAACAAGCTTGGTCAACGA 656
Query 659 AAAAATCAAGGCGGTGGACCAAAACTTTCAGGTAACAGAGAGGACCAAGTCTGTGTATGC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AAAAATCAAGGCGGTGGACCAAAACTTTCAGGTAACAGAGAGGACCAAGTCTGTGTATGC 716
Query 719 AGCTGCGGAGCAGACTGTGAGCAGTGCAGGAAGCGCTGTGATGAAGAACCGTTACGTGTT 778
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AGCTGCGGAACAGACTGTGAGCAGTGCAGGAAGCGCTGTGATGAAGAACCGTTACGTGTT 776
Query 779 AACTGGTGTGAGCTGGGCCGCAGGAGCATTCAATAGAGTGGCTCAAGCAGCTGGAGAGGT 838
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 777 AACTGGTGTGAGTTGGGCCGCAGGAGCATTCAACAGAGTGGCTCAAGCAGCTGGAGAGGT 836
Query 839 TGGACAGAAAACAAAAGAGAAGGTTGAAGCTGAGCAACCATCGCAACCAGCACAGTCGCA 898
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 837 TGGACAGAAAACAAAAGAGAAGGTTGAAGCTGAGCAACCGCCACAACCAGCACAGTCGCA 896
Query 899 GCAGCAACTGCCAGAAGGGTATTCTCCGATTCATTCGTCCGAATACTCGAAGAACTAATA 958
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 897 GCAGCAACTGCCAGAAGGGTATTCTCCAATTCATTCATCCGAATACTCGAAGAACTAATA 956
Query 959 TCATCAAGTTAAA-CAGTTTCCTTTGTTTCTCCTTGTTGGTTTCTTTGACATGGAAGTTG 1017
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 957 TCATCAAGTTAAAACAGTTTCGTTTGTTTCTCCTTGTTGGTTTCTTTGACATGGAAGTTG 1016
Query 1018 GAAATCTGGTTTGGTCTTTGGGATGTACCATATAAGCTATGCCTGGATTTTCCCTACCAC 1077
||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1017 GAAATTTCGTTTGGTCTTTGGGATGTAACATATAAGCTATGCCTGGATTTTCCCTACTAC 1076
Query 1078 TATTAGACTATAGTTTGGGTTTTTTCCAATATACATATTTAATAAGTTGACATTTAAATC 1137
|||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 1077 TATTAGACTATAGTTTGGGTTTTT-CCAATATATATATTTAATAAGTTGACATTGAAATC 1135
Query 1138 TTTCTTTA 1145
||||||||
Sbjct 1136 TTTCTTTA 1143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44031969135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5