BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17030.1
Length=1460
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488566 jgi|Araly1|488566|fgenesh2_kg.6__1700__AT5G17030.1 1982 0.0
Ahg488567 jgi|Araly1|488567|fgenesh2_kg.6__1701__AT5G17040.1 1428 0.0
Ahg326139 jgi|Araly1|326139|fgenesh1_pm.C_scaffold_6001359 1230 0.0
Ahg313693 jgi|Araly1|313693|fgenesh1_pm.C_scaffold_1002473 915 0.0
Ahg906050 jgi|Araly1|906050|Al_scaffold_0003_3178 135 7e-31
> Ahg488566 jgi|Araly1|488566|fgenesh2_kg.6__1700__AT5G17030.1
Length=1387
Score = 1982 bits (1073), Expect = 0.0
Identities = 1286/1389 (93%), Gaps = 14/1389 (1%)
Strand=Plus/Plus
Query 1 AGCATTGCCTGCATCATGGCCAAACCCT-CGCAGCCAACGC-GAGACTCCCACGTGGCAG 58
|||||||| | | ||||||||||||||| || ||||||| | ||||||||||| ||||||
Sbjct 1 AGCATTGCTTCCTTCATGGCCAAACCCTCCG-AGCCAAC-CAGAGACTCCCACATGGCAG 58
Query 59 TTCTCGTTTTCCCCTTCGGCACTCATGCAGCTCCTCTCCTCGCCGTCACGTGCCGTCTCG 118
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 59 TTCTCGCTTTCCCCTTCGGCACTCATGCAGCTCCTCTCCTAGCCGTCACGTGCCGTCTCG 118
Query 119 CCACCGCTGCTCCCTCCACCGTCTTCTCCTTCTTCAGCACCGCACGATCCAACTCGTCGT 178
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CCACCGCTGCTCCCTCCACTGTCTTCTCCTTCTTCAGCACCGCACGATCCAACTCGTCGT 178
Query 179 TACTCTCCTCCGATATCCCCACAAACATTCGTGTCCACAACGTCGATGACGGTGTTCCTG 238
|||||||||||||| | ||| | |||||||| ||||||||||||| ||||||||||||||
Sbjct 179 TACTCTCCTCCGATCTTCCCGCGAACATTCGAGTCCACAACGTCGCTGACGGTGTTCCTG 238
Query 239 AGGGATTCGTGTTGACGGGGAATCCACAGCACGCTGTTGAGCTGTTTCTTGAAGCGGCGC 298
|||||| | |||||||||| ||||||||| | || ||||||||||||||||||||||| |
Sbjct 239 AGGGATCCATGTTGACGGGTAATCCACAGGAAGCGGTTGAGCTGTTTCTTGAAGCGGCAC 298
Query 299 CAGAGATTTTCCGAAGAGAAATCAAGGCGGCCGAGACCGAAGTTGGTAGG-AAGTTCAAG 357
| ||||||||||| || |||||||||||||| ||||| |||||||||||| ||| |||||
Sbjct 299 CGGAGATTTTCCGGAGGGAAATCAAGGCGGCGGAGACAGAAGTTGGTAGGAAAG-TCAAG 357
Query 358 TGCATCCTTACGGATGCGTTCCTCTGGTTAGCAGCGGAGACGGCGGCTGCGGAGATGAAA 417
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 358 TGCATCCTTACGGATGCGTTCCTCTGGTTCGCAGCGGAGACGGCGGCGGCGGAGATGAAA 417
Query 418 GCGTCGTGGGTTGCGTACTATGGAGGCGGAGCAACCTCGCTCACTGCTCATCTCTACACA 477
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 418 GCGTCGTGGGTTGCCTACTATGGAGGCGGAGCAAACTCGCTCACTGCTCATCTCTACACA 477
Query 478 GATGCCATCAGAGAAAACGTCGGTGTCAAAGAAGTAGGTGAGCGTATGGAGGAGACAATA 537
|||| |||||||||||||||||||||||||| || | | |||||||||||||||| ||
Sbjct 478 GATGTCATCAGAGAAAACGTCGGTGTCAAAG--GT--G-G-GCGTATGGAGGAGACATTA 531
Query 538 GGGTTTATCTCAGGAATGGAGAAGATCAGAGTCAAAGACACACAAGAAGGCGTTGTGTTT 597
||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||
Sbjct 532 GGGTTTATCTCAGGAATGGGGAAGATCAGAGTCAAAGACACACCAGAAGGAGTTGTGTTT 591
Query 598 GGGAACTTAGACTCTGTTTTCTCTAAAACGTTGCACCAAATGGGTCTTGCTTTACCTCGT 657
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 592 GGGAACTTAGACTCTGTTTTTTCTAAAACGTTGCACCAAATGGGTCGTGCTTTACCTCGT 651
Query 658 GCCACTGCTGTTTTCATCAATTCCTTTGAAGAATTGGATCCTACGTTTACAAATGATTTC 717
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 652 GCCAAAGCTGTTTTCATCAATTCCTTTGAAGAATTGGATCCTACATTTACAAATGACTTC 711
Query 718 AGATCGGAATTCAAACGTTACCTAAACATCGGTCCTCTCGCTTTATTATCTTCTCCATCG 777
|| ||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 712 AGTTCGAAATTCACACGTTACCTAAGCATCGGTCCTCTCGCTTTATTATCTTCTCCATCG 771
Query 778 CAAACATCAACGCTAGTGCACGATCCTCACGGTTGCTTGGCTTGGATCGAGAAGCGGTCC 837
|||||||| || ||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 772 CAAACATCCACACTAATGCACGATCCTCACGGTTGCTTGGCTTGGATCGAGAAGCGATCC 831
Query 838 ACTGCTTCTGTAGCGTACATTGCCTTTGGTAGAGTCGCGACACCGCCTCCTGTAGAGCTT 897
|||| |||||||||||||||||||| |||||||||||| |||||||||||| |||||||
Sbjct 832 CCTGCATCTGTAGCGTACATTGCCTTCGGTAGAGTCGCGTCACCGCCTCCTGGAGAGCTT 891
Query 898 GTGGCGATAGCACAAGGATTGGAATCGAGTAAAGTGCCTTTTGTTTGGTCGCTACAAGAG 957
| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 892 GAGGCGATAGCACAAGGATTGGAGTCGAGTAAAGTGCCTTTCGTTTGGTCGCTACAAGAG 951
Query 958 ATGAAAATGACTCATTTACCAGAAGGCTTTTTGGATCGGACCAGAGAGCAAGGGATGGTG 1017
||||| ||| |||||||||| |||| ||| |||| ||||| ||||||||||||||||||
Sbjct 952 ATGAACATGGTTCATTTACCAAAAGGGTTTCTGGAACGGACAAGAGAGCAAGGGATGGTG 1011
Query 1018 GTTCCATGGGCACCACAAGTGGAGCTGCTAAACCATGAAGCAATGGGTGTGTTTGTTTCG 1077
|| ||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1012 GTCCCATGGGCACCTCAAGTGGAGCTGCTAAACCATGAAGCAACGGGTGTGTTTGTGTCG 1071
Query 1078 CATGGTGGGTGGAACTCAGTGTTGGAGAGTGTGTCGGCAGGTGTACCGATGATTTGTAGA 1137
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1072 CATGGTGGGTGGAACTCAGTGTTGGAGAGTGTGTCGGCAGGTGTACCGATGATTTGCAGA 1131
Query 1138 CCGATTTTCGGGGATCATGCAATCAATGCAAGATCTGTGGAAGCTGTGTGGGAGATCGGA 1197
||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || |||
Sbjct 1132 CCGATTTTCGGGGATCATGCAGTCAATGCAAGATCTGTGGAGGCTGTGTGGGAAATTGGA 1191
Query 1198 GTGACGATTAGT-AGTGGAGTCTTCACGAAGGATGGATTTGAGGAGAGTTTGGATCGGGT 1256
||||||||| | | |||||| ||||| |||||||||||| |||||||||||||||||||
Sbjct 1192 ATGACGATTATTGA-TGGAGTTTTCACAAAGGATGGATTTAAGGAGAGTTTGGATCGGGT 1250
Query 1257 TTTGGTTCAAGATGATGGCAAGAAGATGAAGGTTAATGCTAAAAAGCTTGAAGAACTAGC 1316
||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||
Sbjct 1251 TTTGGTTCAAGATGATGGCAAGAAGATGAAGGTTAATTCTAAGAAGCTTAAAGAACTAGC 1310
Query 1317 ACAAGAAGCTGTCTCTACCAAAGGAAGCTCCTTTGAGAATTTTGGAGGATTGTTGGACGA 1376
|||||| ||||||||||| |||||||||||||| ||||||| ||| |||||||||||
Sbjct 1311 ACAAGACGCTGTCTCTACGGAAGGAAGCTCCTTTAAGAATTTCAAAGGTTTGTTGGACGA 1370
Query 1377 AGTTGTGAA 1385
|||||||||
Sbjct 1371 AGTTGTGAA 1379
> Ahg488567 jgi|Araly1|488567|fgenesh2_kg.6__1701__AT5G17040.1
Length=1406
Score = 1428 bits (773), Expect = 0.0
Identities = 1169/1358 (86%), Gaps = 35/1358 (3%)
Strand=Plus/Plus
Query 44 ACTCCCACGTGGCAGTTCTCG-TTTTCCCCTTCGGCACTCA-TG-CAGCTCCTCTCCTCG 100
|||||||||| |||||||||| |||| || ||||||| ||| | ||| || ||||||
Sbjct 15 ACTCCCACGTCGCAGTTCTCGCTTTT-CCATTCGGCAGTCACGGTCAG--GCTATCCTCG 71
Query 101 CCGTCACGTGCCGTCTCGCCACCGC-TGCTCCCTCCACCGTCTTCTCCTTCTTCAGCACC 159
| ||||| ||| |||||| |||| | |||| |||||||||||||||||||||| ||||
Sbjct 72 CTGTCACCCACCGCCTCGCCTCCGCAT-CTCCTTCCACCGTCTTCTCCTTCTTCAACACC 130
Query 160 GCACGATCCAACTCGTCGTTACTCTCCTCCGAT-ATCCCCACAAACATTCGTGTCCACAA 218
||| |||||||| || ||| ||||||||||| | || | |||||||| ||||| |
Sbjct 131 TCACAATCCAACTTTTCATTATTCTCCTCCGATCGT-CCGGCGAACATTCGGGTCCATGA 189
Query 219 CGTCG-ATGACGGTGTTCCTGAGGGATTCGTGTTGACGGGGAATCCACAGCACGCTGTTG 277
||| | |||||||||||| ||||||| |||| | | | ||||||||| | || || |
Sbjct 190 CGT-GTCTGACGGTGTTCCCGAGGGATACGTGCTCTCCAGAAATCCACAGGAGGCGGTCG 248
Query 278 AGCTGTTTCTTGAAGCGGCGCCAG-AGATTTTCCGAAGAGAAATCAAGGCGGCCGAGACC 336
|||||||||||||||||||||| | ||||||| || |||||| || || ||| |||||
Sbjct 249 AGCTGTTTCTTGAAGCGGCGCC-GAAGATTTTTCGGAGAGAACTCGCGGTGGCGGAGACT 307
Query 337 GAAGTTGGTAGG-AAGTTCA-AGTGCATCCTTACGGATGCGTTCCTCTGGTTAGCAGCGG 394
|| ||| ||||| ||| | | | ||||| ||||||||||||||| ||||||| || ||||
Sbjct 308 GAGGTTAGTAGGAAAG-TGACA-TGCATGCTTACGGATGCGTTCATCTGGTTCGCTGCGG 365
Query 395 AGACGGCGGCTGCGGAGATGAAAGCGTCGTGGGTTGCGTACTATGGA--GGCGGAGC-AA 451
| | ||| | ||||||||||||| |||||||||||| | | |||| |||| | ||
Sbjct 366 ATATGGC-G--GCGGAGATGAAAGTGTCGTGGGTTGC-T-TTCTGGACCTCCGGA-CAAA 419
Query 452 CCTCGCTCACTGCTCATCTCTACACAGATGC-CATCAGAGAAAACGTCGGTGTCAAAGAA 510
|||||||||||||||||||||||||||| | ||||||||||| | ||||||||||||||
Sbjct 420 ACTCGCTCACTGCTCATCTCTACACAGAT-CTCATCAGAGAAACCATCGGTGTCAAAGAA 478
Query 511 GTAGGTGAGCGTATGGAGGAGACAATAGGGTTTATCTCAGGAATGGAGAAGATCAGAGTC 570
|||| || |||||||||||| ||| |||||||||| ||||||||||||||||||||||||
Sbjct 479 GTAGATGGGCGTATGGAGGAAACATTAGGGTTTATTTCAGGAATGGAGAAGATCAGAGTC 538
Query 571 AAAGACACACAAGAAGGCGTTGTGTTTGGGAACTTAGACTCTGTTTTCTCTAA-AACGTT 629
||||||| || || ||| |||||||||||||| ||||||||||||||||| || ||| |
Sbjct 539 AAAGACATACCAGGAGGAGTTGTGTTTGGGAATTTAGACTCTGTTTTCTC-AACTACGCT 597
Query 630 GCACCAAATGGGTCTTGCTTTACCTCGTGCCACTGCTGTTTTCATCAATTCCTTTGAAGA 689
|||||||||||| |||||||| ||||| || ||||| |||| ||| ||||||||||||||
Sbjct 598 GCACCAAATGGGACTTGCTTTGCCTCGGGCGACTGCGGTTTACATGAATTCCTTTGAAGA 657
Query 690 ATTGGATCCTACGTTTACAAAT-GATTTCAGATCGGAATTCAAACGTTACCTAAACATCG 748
||| |||||||| || || | | |||| || ||||||||||||| | | ||| |
Sbjct 658 ATTAGATCCTACATTGAC-TGTAAACCTCAGGTCTAAATTCAAACGTTATTTGAGCATTG 716
Query 749 GTCCTCTCGCTTTATTATCTTCTCCATCGCAAACATCAACGCTAGTGCACGATCCTCACG 808
||||||| || || |||| |||||||||||||| | ||| | | |||| ||||||||||
Sbjct 717 GTCCTCTAGCGTTGTTATTTTCTCCATCGCAAAGAGAAACACCATTGCATGATCCTCACG 776
Query 809 GTTGCTTGGCTTGGATCGAGAAGCGGTCCACTGCTTCTGTAGCGTACATTGCCTTTGGTA 868
||||| |||||||||||||||||||||| || ||||||||||||||||||||| ||||
Sbjct 777 CCTGCTTAGCTTGGATCGAGAAGCGGTCCATTGATTCTGTAGCGTACATTGCCTTCGGTA 836
Query 869 GAGTCGCGACACCGCCTCCTGTAGAGCTTGTGGCGATAGCACAAGGATTGGAATCGAGTA 928
||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 837 GAGTCATGACACCGCCTCCTGGAGAGCTTGTGGCAATAGCACAAGGATTGGAATCGAGTA 896
Query 929 AAGTGCCTTTTGTTTGGTCGCTACAAGAGATGAAAATGACTCATTTACCAGAAGGCTTTT 988
|||||||||||||||||||||||||||||||||| ||| |||||||||| |||| ||||
Sbjct 897 AAGTGCCTTTTGTTTGGTCGCTACAAGAGATGAACATGGTTCATTTACCAAAAGGGTTTT 956
Query 989 TGGATCGGACCAGAGAGCAAGGGATGGTGGTTCCATGGGCACCACAAGTGGAGCTGCTAA 1048
|||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 957 TGGATCGGACAAGAGAGCAAGGGATGGTGGTCCCATGGGCACCTCAAGTGGAGCTGCTAA 1016
Query 1049 ACCATGAAGCAATGGGTGTGTTTGTTTCGCATGGTGGGTGGAACTCAGTGTTGGAGAGTG 1108
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1017 ACCATGAAGCAATGGGTGTGTTTGTGTCGCATGGTGGGTGGAACTCAGTGTTGGAGAGTG 1076
Query 1109 TGTCGGCAGGTGTACCGATGATTTGTAGACCGATTTTCGGGGATCATGCAATCAATGCAA 1168
||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||
Sbjct 1077 TGTCGGCAGGTGTACCGATGATTTGCAGACCGATTTTCGGGGACCATGCAGTCAATGCAA 1136
Query 1169 GATCTGTGGAAGCTGTGTGGGAGATCGGAGTGACGATTAGTAGTGGA-GTCTTCACGAAG 1227
|||| ||||| |||||||||||||| ||| ||||||||| || | | || ||||| |||
Sbjct 1137 GATCCGTGGAGGCTGTGTGGGAGATTGGAATGACGATTATTAAAGAAAGT-TTCACCAAG 1195
Query 1228 GATGGATTTGAGGAGAGTTTGGATCGGGTTTTGGTTCAAGATGATGGCAAGAAGATGAAG 1287
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1196 GATGGATTTGAGGAGAGTTTAGATCGGGTTTTGGTTCAAGATGATGGCAAGAAGATGAAG 1255
Query 1288 GTTAATGCTAAAAAGCTTGAAGAACTAGCACAAGAAGCTGTCTCTACCAAAGGAAGCTCC 1347
|||||| |||| |||||| |||||||||||||||| ||||||||||| |||||||||||
Sbjct 1256 GTTAATTCTAAGAAGCTTAAAGAACTAGCACAAGACGCTGTCTCTACGGAAGGAAGCTCC 1315
Query 1348 TTTGAGAATTTTGGAGGATTGTTGGACGAAGTTGTGAA 1385
||| ||||||| ||| ||||||||||||||||||||
Sbjct 1316 TTTAAGAATTTCAAAGGTTTGTTGGACGAAGTTGTGAA 1353
> Ahg326139 jgi|Araly1|326139|fgenesh1_pm.C_scaffold_6001359
Length=1386
Score = 1230 bits (666), Expect = 0.0
Identities = 1167/1402 (83%), Gaps = 62/1402 (4%)
Strand=Plus/Plus
Query 16 ATGGCCAAACCCTCGCAGCCAACGCGAGACTCCCACGTGGCAGTTCTCG-TTTTCCCCTT 74
||| ||||||||||| ||||||| ||||||| |||||||||||||||| |||| || ||
Sbjct 1 ATGACCAAACCCTCGGAGCCAACTAGAGACTCACACGTGGCAGTTCTCGCTTTT-CCTTT 59
Query 75 CGGCACTCATGCAGCTCCTCTCCTCGCCGTCACGTGCCGTCTCGCCACCGCTGCTCCCTC 134
||| ||||| ||||||||||||||| |||||||| |||| |||||| |||||||||| ||
Sbjct 60 CGGTACTCACGCAGCTCCTCTCCTCACCGTCACGCGCCGCCTCGCCTCCGCTGCTCCTTC 119
Query 135 CACCGTCTTCTCCTTCTTCAGCACCGCACGATCCAACTCGTCGTTA--CTCTCC--TC-- 188
|||||||||||||||||||| |||||| | ||||||||| |||||| || || |
Sbjct 120 CACCGTCTTCTCCTTCTTCAACACCGCGCAATCCAACTCTTCGTTATTTTCCCCAGGCGA 179
Query 189 C---G-ATATC-CCCACA-AACATTC-GTGTCCACAACG-TCGATGACGGTGTTCCTGAG 240
| | | ||| | | |||| || | ||| || | | || ||||||||||| |||
Sbjct 180 CGAAGCAGATCGTCTGGAGAACA-TCAGAGTCTACGATGTTC-CCGACGGTGTTCCGGAG 237
Query 241 GGATTCGTGTTGACGGGGA-ATCCACAGCACGCTG-TTGAGCTGTTTCTTGAAGCGGCGC 298
|||| |||||| || |||| | |||||| | || | | ||||||||||| ||||| ||||
Sbjct 238 GGATACGTGTTCACCGGGAGA-CCACAGGAGGC-GATCGAGCTGTTTCTAGAAGCTGCGC 295
Query 299 CAGAGATTTTCCGAAGAGAAATCAAGGCGGCCGAGACCGAAGTTGGTA-GGAAGTTCAAG 357
| |||| |||||| ||||||||| |||||| ||||| || ||||||| ||| | | ||
Sbjct 296 CGGAGAATTTCCGGAGAGAAATCGCGGCGGCGGAGACGGAGGTTGGTAGGGACG-TGAAA 354
Query 358 TGCATCCTT-ACGGATGCGTTCCTCTGGTTAGCAGCGGAGACGGCGGCTGCGGAGATGAA 416
|| | || || |||||||| ||||||| || || || | ||| | ||||||||||
Sbjct 355 TG-TTTGTTGACTGATGCGTTTTTCTGGTTCGCGGCTGATATGGC-G--ACGGAGATGAA 410
Query 417 AGCGTCGTGGGTTGCGTACTATGGA--GGCGGAGCAACCTCGCTCACTGCTCATCTCTAC 474
|| |||||| |||||| | |||| | |||||||| ||||||||||||||||||||||
Sbjct 411 TGCATCGTGGATTGCGT--TTTGGACCGCCGGAGCAAACTCGCTCACTGCTCATCTCTAC 468
Query 475 ACAGATGC-CATCAGAGAAAACGTCGGTGTCAAAGAAGTAGGTGAGCGTATGGAGGAGAC 533
|||||| | ||||||||||| | ||||||||||||||||||||| |||||||||||||||
Sbjct 469 ACAGAT-CTCATCAGAGAAACCATCGGTGTCAAAGAAGTAGGTGGGCGTATGGAGGAGAC 527
Query 534 AATAGGGTTTATCTCAGGAATGGAGAAGATCAGAGTCAAAGACACACAAGAAGGCGTTGT 593
| |||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 528 ATTAGGGTTTATTTCAGGAATGGAGAAGATCAGAGTCAAAGACACACCAGAAGGAGTTGT 587
Query 594 GTTTGGGAACTTAGACTCTGTTTTCTCTAAAACGTTGCACCAAATGGGTCTTGCTTTACC 653
|||||| || ||||||||||||||||| || | | ||||||||||||| |||||||||||
Sbjct 588 GTTTGGTAATTTAGACTCTGTTTTCTCCAAGATGCTGCACCAAATGGGACTTGCTTTACC 647
Query 654 TCGTGCCACTGCTGTTTTCATCAATTCCTTTGAAGAATTGGATCCTACGTTTACAAATGA 713
|||||||||||| |||||||||||||| ||||||||| |||||||||| || || ||| |
Sbjct 648 TCGTGCCACTGCGGTTTTCATCAATTCTTTTGAAGAACTGGATCCTACATTGACCAATAA 707
Query 714 TTTCAGATCGGAATTCAAACGTTACCTAAACATCGGTCCTCTCGCTTTATTATCTTCTCC 773
|||||||| |||||||||||||||| ||||| |||||||||| |||||||||||| |
Sbjct 708 CCTCAGATCGAAATTCAAACGTTACCTGAACATTGGTCCTCTCGGGTTATTATCTTCTAC 767
Query 774 ATCGCAAACATCAACGCTAGTGCACGATCCTCACGGTTGCTTGGCTTGGATCGAGAAGCG 833
|| |||| | | | | | | |||||||||||||| || ||||||||||| | |||| |
Sbjct 768 ATTGCAA-C-T-A--G-T-G--CACGATCCTCACGGCTGTTTGGCTTGGATTGGGAAGAG 818
Query 834 GTCCACTGCTTCTGTAGCGTACATT-GCCTTTGGTA-GAGTCGCGACACCGCCTCCTGTA 891
||| |||||||||| ||||||||| || ||||||| | ||| |||||||||||||| |
Sbjct 819 ATCCCCTGCTTCTGTGGCGTACATTAGC-TTTGGTACG-GTCATGACACCGCCTCCTGGA 876
Query 892 GAGCTTGTGGCGATAGCACAAGGATTGGAATCGAGTAAAGTGCCTTTTGTTTGGTCGCTA 951
||||||| |||||||||| |||| |||||||||||||||||||| ||||||||||||||
Sbjct 877 GAGCTTGCGGCGATAGCAGAAGGGTTGGAATCGAGTAAAGTGCCGTTTGTTTGGTCGCTT 936
Query 952 CAAG-AGATGAAAATGACTCATTTACCAGAAGGCTTTTTGGATCGGACCAGAGAGCAAGG 1010
||| ||| ||| || |||||||||| |||| ||||||||| |||| |||||||||||
Sbjct 937 -AAGGAGAAGAACTTGGTTCATTTACCAAAAGGGTTTTTGGATAGGACAAGAGAGCAAGG 995
Query 1011 GATGGTGGTTCCATGGGCACCACAAGTGGAGCTGCT-AAACCATGAAG-CAATGGGTGTG 1068
||| ||||||||||||||||| |||||||| ||||| |||| | |||| ||| |||||||
Sbjct 996 GATAGTGGTTCCATGGGCACCGCAAGTGGAACTGCTGAAAC-A-GAAGGCAACGGGTGTG 1053
Query 1069 TTTGTTTCGCATGGTGGGTGGAACTCAGTGTTGGAGAGTGTGTCGGCAGGTGTACCGATG 1128
||||| ||||| |||| |||||||| |||||||||||||| |||| |||||| | ||||
Sbjct 1054 TTTGTGACGCATTGTGGATGGAACTCGGTGTTGGAGAGTGTTTCGGGAGGTGTTCTGATG 1113
Query 1129 ATTTGTAGACCGATTTTCGGGGATCATGCA-ATC-AATGCAAGATCTGTGGAAGCTGTGT 1186
||||| || ||| |||| |||||||| | | || || | |||| | ||||| | |||||
Sbjct 1114 ATTTGCAGGCCGTTTTTTGGGGATCA-G-AGATTGAACGGAAGAGCAGTGGAGGTTGTGT 1171
Query 1187 GGGAGATCGGAGTGACGATTAGT-AGTGGAGTCTTCACGAAGGATGGATTTGAGGAGAGT 1245
||||||| ||| |||||||| | | |||||||||||| || ||||| |||||| || ||
Sbjct 1172 GGGAGATTGGAACGACGATTA-TCAATGGAGTCTTCACAAAAGATGGTTTTGAGAAGTGT 1230
Query 1246 TTGGATCGGGTTTTGGTTCAAGATGATGGCAAGAAGATGAAG-GTTAATGCTAAAAAGCT 1304
|||||||| |||||||||||||||||||| ||||||||||| || |||||||| |||||
Sbjct 1231 TTGGATCGAGTTTTGGTTCAAGATGATGGTAAGAAGATGAAATGT-AATGCTAAGAAGCT 1289
Query 1305 TGAAGAACTAGCACAAGAAGCTGTCTCTACCAAAGGAAGCTCCTTTGAGAATTTTGGAGG 1364
| |||| |||| ||| |||||||||||| | |||||||| |||| ||||||||| |||||
Sbjct 1290 TAAAGAGCTAGGACACGAAGCTGTCTCTTCGAAAGGAAGTTCCTCTGAGAATTTCGGAGG 1349
Query 1365 ATTGTTGGACGAAGTTGTGAAC 1386
||||||||| | ||||| ||||
Sbjct 1350 ATTGTTGGATGCAGTTGCGAAC 1371
> Ahg313693 jgi|Araly1|313693|fgenesh1_pm.C_scaffold_1002473
Length=1365
Score = 915 bits (495), Expect = 0.0
Identities = 1088/1365 (80%), Gaps = 77/1365 (6%)
Strand=Plus/Plus
Query 41 GAGACTCCCACGTGGCAGTTCT--CGTT-TTCCCC-TTCGGCACTCATGCAGCTCCTCTC 96
|||||||||||||||||||||| |||| |||||| || ||| ||||||| | |||||||
Sbjct 26 GAGACTCCCACGTGGCAGTTCTCGCGTTCTTCCCCGTT-GGCGCTCATGCCGGTCCTCTC 84
Query 97 CTCGCCGTCACGTGCCGTCTCGCCACCGCTGCTCCCTCCACCGTCTTCTCCTTCTTCAGC 156
| ||||| ||| ||||||||||| |||| |||||||||||| |||| || ||||||| |
Sbjct 85 TTAGCCGTTACGCGCCGTCTCGCCGCCGCCGCTCCCTCCACCATCTTTTCTTTCTTCAAC 144
Query 157 ACCGCACGATCCAACTCGTCGTTACTCTCC-TC--CGAT-ATCCCCACAAACATTC-GTG 211
||||||||||| ||| | || || ||||| | ||| |||| | ||||| || | |
Sbjct 145 ACCGCACGATCAAACGCTTCCTTGTTCTCCGACATAGATCATCCAGA-AAACA-TCAGGG 202
Query 212 TCCACAACGTCGATGACGGTGTTCCTGAGGGATTCGTGTTGACGGGGAATCCACAGCACG 271
||||| |||||| |||||||||||| |||||| | || | || |||| ||||| | | |
Sbjct 203 TCCACGACGTCGCTGACGGTGTTCCGGAGGGAACCATGCTAACCGGGAGTCCACTGGA-G 261
Query 272 CTG-TTGAGCTGTTTCTTGAAGCGGCGCCA-GAGATTTTCCGAAGAGAAATCAAGGCGGC 329
|| | ||||||||||| |||||||| ||| | || |||||| |||||||| ||||||
Sbjct 262 ATGCTCGAGCTGTTTCTCGAAGCGGCTCCACG-GAATTTCCGGAGAGAAATGGCGGCGGC 320
Query 330 CGAGACCGAAGTTGGT-AGGAAGTTCA-AGTGCATCCTTACGGATGCGTTCCTCTGGTTA 387
||||| ||||| ||| || ||| | | | | ||| || || ||||| ||| |||||||
Sbjct 321 AGAGACTGAAGTCGGTAAGAAAG-TGACA-TCCATGCTAACAGATGCCTTCTTCTGGTTC 378
Query 388 GCAGCGGAGACGGCGGCTGCGGAGATGAAAGCGTCGTGGGTTGCGTACTATGG-AGGCGG 446
|||||||| | |||||| |||||||| || | |||||||||| || || |||||
Sbjct 379 GCAGCGGATA---TGGCTGCTGAGATGAAGGCCACTTGGGTTGCGTTCT-GGGCCGGCGG 434
Query 447 AGC-AACCTCGCTCACTGCTCATCTCTACACAGATGC-CATCAGAGAAAACGTCGGTGTC 504
||| || ||| ||| ||||||||| ||||| ||| | ||||||||||| | |||| |||
Sbjct 435 AGCGAA-CTCTCTCTGTGCTCATCTTTACACTGAT-CTCATCAGAGAAACCATCGGCGTC 492
Query 505 AAAGAAGTAGGTGAGCGTATGGAGGAGACAATAGGGTTTAT-CTCAGGAATGGAGAAGAT 563
| |||||| || ||||||||| |||||| |||||||||| | ||||||||||||| |
Sbjct 493 --A-AAGTAGATGTGCGTATGGAAGAGACATTAGGGTTTATAC-CAGGAATGGAGAA-TT 547
Query 564 -CAGAGTCAAAGACACACAAGAAGG-CGTTGTGTTTGGGA-ACTTAGACTCTGTTTTCTC 620
|||||| ||||| | || || ||| ||||| ||| | | | || |||||||||||| |
Sbjct 548 ACAGAGTTAAAGATATACCAG-AGGAAGTTGTATTT-GAAGATTTGGACTCTGTTTTC-C 604
Query 621 TAAAACG-T-TGCACCAAATGGGTCTTGCTTTACCTCGTGCCACTGCTGTTTTCATCAAT 678
||| | | | |||||||| |||||||||||||||||||| |||| |||||||||| |
Sbjct 605 -CAAAGGCTCTATACCAAATGAGTCTTGCTTTACCTCGTGCCTCTGCGGTTTTCATCAGT 663
Query 679 TCCTTTGAAGAATTGGATCCTACGTTTACAAATGATTTCAGATCGGAA-TTCAAACGTTA 737
||||||||||| || || ||||| || || || | | ||||| || || |||||||
Sbjct 664 TCCTTTGAAGATTTAGAACCTACATTGACCCATAACCTAAGATCCAAACTT-AAACGTTT 722
Query 738 CCTAAACATCGGTCCTCTCGCTTTATTATCTTCTCCATCGCAAACATCAACGCTAGTGCA 797
| | ||||||| |||||| | |||||||||||| ||||| | | | |||||||
Sbjct 723 CTTGAACATCGCCCCTCTCACGTTATTATCTTCTACATCG-----A-C-A--CTAGTGCG 773
Query 798 CGATCCTCACGGTTGCTTGGCTTGGATCGAGAAGCGGTCCA-CTGCTTCTGTAGCGTACA 856
|||||||| || ||||| |||||||| |||||| | | || ||||||| ||||||||||
Sbjct 774 GGATCCTCATGGCTGCTTTGCTTGGATGGAGAAGAGAT-CACCTGCTTCCGTAGCGTACA 832
Query 857 TT-GCCTTTGGTAGAGTC--GCGACACCGCCTCCTGTAGAGCTTGTGGCGATAGCACAAG 913
|| | ||| || | ||| | || |||||||||||||||||||||||||||||||||||
Sbjct 833 TTAG-CTTCGGCACCGTCATG-GA-ACCGCCTCCTGTAGAGCTTGTGGCGATAGCACAAG 889
Query 914 GATTGGAATCGAGTAAAGTGCCTTTTGTTTGGTCGCTACAAG-AGATGAAAATGACTCAT 972
| ||||||||||| |||||||| |||||||||||||| ||| ||| ||| ||| ||||
Sbjct 890 GCTTGGAATCGAGCAAAGTGCCGTTTGTTTGGTCGCTT-AAGGAGAAGAACATGGTTCAT 948
Query 973 TTACCAGAAGGCTTTTTGGATCGGACCAGAGAGCAAGGGATGGTGGTTCCATGGGCACCA 1032
||||| |||| |||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 949 CTACCAAAAGGGTTTTTGGATCGGACAAGAGAGCAAGGGATAGTGGTTCCATGGGCTCCC 1008
Query 1033 CAAGTGGAGCTGCT-AAACCATGAAGCAATGGGTGTGTTTGTTTCGCATGGTGGGTGGAA 1091
|||||||| ||||| |||| | || |||| |||||| ||| | ||| |||| |||||
Sbjct 1009 CAAGTGGAACTGCTGAAAC-ACGAGGCAACAGGTGTGAATGTGACACATTGTGGATGGAA 1067
Query 1092 CTCAGTGTTGGAGAGTGTGTCGGCAGGTGTACCGATGATTTGTAGACCGATTTTCGGG-G 1150
||| |||||||||||||||||||||||||||||||||||| | ||||||||||| || |
Sbjct 1068 CTCGGTGTTGGAGAGTGTGTCGGCAGGTGTACCGATGATTGGCAGACCGATTTT-GGCTG 1126
Query 1151 ATCAT-G-CAATCAATGCAAGATCTGTGGAAGCTGTGTGGGAGATCGGAGTGACGATT-A 1207
|| || | | |||| | |||| | ||||| | ||||||| || | ||| ||| ||| |
Sbjct 1127 ATAATAGGC--TCAACGGAAGAGCAGTGGAGGTTGTGTGGAAGGTTGGAATGATGATGGA 1184
Query 1208 GTAGTGGAGTCTTCACGAAGGATGGATTTGAGGAGAGTTTGGATCGGGTTTTGGTTCAAG 1267
|| ||||||||||||||| || ||||||||| || ||||| ||| ||||||||||| |
Sbjct 1185 -TAATGGAGTCTTCACGAAAGAGGGATTTGAGAAGTGTTTGCATCAAGTTTTGGTTCATG 1243
Query 1268 ATGATGGCAAGAAGATGAAGGTTAATGCTAAAAAGCTTGAAGAACTAGCAC-AAGAAGCT 1326
||||||| |||| |||||||| |||||| || |||||| ||||| | | | |||||| |
Sbjct 1244 ATGATGGTAAGACGATGAAGGCTAATGCCAAGAAGCTTAAAGAAAAA-CTCCAAGAAGAT 1302
Query 1327 GTCTCTACCAAAGGAAGCTCCTTTGAGAATTTTGGAGGATTGTTG 1371
||||||| ||||||||||||||||||||||| || |||||||
Sbjct 1303 GTCTCTAAGAAAGGAAGCTCCTTTGAGAATTTCAAAGTATTGTTG 1347
> Ahg906050 jgi|Araly1|906050|Al_scaffold_0003_3178
Length=396
Score = 135 bits (73), Expect = 7e-31
Identities = 186/238 (78%), Gaps = 17/238 (7%)
Strand=Plus/Plus
Query 277 GAGCTGTTTCTTGAAGCGGCGCCAGAGATTTTCCGAAGAGAAATCAAGGCGGCCGAGACC 336
||||||||||| ||||| ||||| |||| |||||| ||||||||| ||| | ||||
Sbjct 169 GAGCTGTTTCTAGAAGCTGCGCCGGAGAATTTCCGGAGAGAAATCGCGGCAGAGGAGAAG 228
Query 337 GAAGTTGGTAG-GAAGTTCAAGTGCATCCTT-ACGGATGCG--TTCCTCTGGTTAGCAGC 392
|| |||||||| ||| || || || | || || ||||| |||||| ||| || ||
Sbjct 229 GAGGTTGGTAGAGAA-TTGAAATG-TTTGTTGACTAATGCGTTTTCCTC--GTTCGCGGC 284
Query 393 GGAGACGGCGGCTGCGGAGATGAAAGCGTCGTGGGTTGCGTACTATGGA--GGCGGAGCA 450
|| | ||| | |||||||||| || | ||||||||||| | |||| | |||||||
Sbjct 285 TGATATGGC-G--ACGGAGATGAATGCATTGTGGGTTGCGT--TTTGGACCGCCGGAGCA 339
Query 451 ACCTCGCTCACTGCTCATCTCTACACAGATGC-CATCAGAGAAAACGTCGGTGTCAAA 507
| |||||||||||||||||||||||||||| | ||||||||||| | ||| |||||||
Sbjct 340 AACTCGCTCACTGCTCATCTCTACACAGAT-CTCATCAGAGAAACCATCGATGTCAAA 396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54621411330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5