BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17050.1
Length=1523
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326139 jgi|Araly1|326139|fgenesh1_pm.C_scaffold_6001359 2060 0.0
Ahg488567 jgi|Araly1|488567|fgenesh2_kg.6__1701__AT5G17040.1 1206 0.0
Ahg313693 jgi|Araly1|313693|fgenesh1_pm.C_scaffold_1002473 1164 0.0
Ahg906050 jgi|Araly1|906050|Al_scaffold_0003_3178 331 8e-90
> Ahg326139 jgi|Araly1|326139|fgenesh1_pm.C_scaffold_6001359
Length=1386
Score = 2060 bits (1115), Expect = 0.0
Identities = 1297/1385 (94%), Gaps = 11/1385 (1%)
Strand=Plus/Plus
Query 101 ATGACCAAACCCTCCGACCCAACCAGAGACTCCCACGTGGCAGTTCTCGCTTTTCCTTTC 160
|||||||||||||| || ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGACCAAACCCTCGGAGCCAACTAGAGACTCACACGTGGCAGTTCTCGCTTTTCCTTTC 60
Query 161 GGCACTCATGCAGCTCCTCTCCTCACCGTCACGCGCCGCCTCGCCTCCGCCT-CTCCTTC 219
|| ||||| |||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 61 GGTACTCACGCAGCTCCTCTCCTCACCGTCACGCGCCGCCTCGCCTCCG-CTGCTCCTTC 119
Query 220 CACCGTCTTCTCTTTCTTCAACACCGCACAATCCAACTCTTCGTTATTTTCCTCC-GGTG 278
|||||||||||| |||||||||||||| |||||||||||||||||||||||| || || |
Sbjct 120 CACCGTCTTCTCCTTCTTCAACACCGCGCAATCCAACTCTTCGTTATTTTCC-CCAGGCG 178
Query 279 ACGAAGCAGATCGTCCGGCGAACATCAGAGTATACGATATTGCCGACGGTGTTCCGGAGG 338
||||||||||||||| || |||||||||||| |||||| || ||||||||||||||||||
Sbjct 179 ACGAAGCAGATCGTCTGGAGAACATCAGAGTCTACGATGTTCCCGACGGTGTTCCGGAGG 238
Query 339 GATACGTGTTTAGCGGGAGACCACAGGAGGCGATCGAGCTGTTTCTTCAAGCTGCGCCGG 398
|||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 239 GATACGTGTTCACCGGGAGACCACAGGAGGCGATCGAGCTGTTTCTAGAAGCTGCGCCGG 298
Query 399 AGAATTTCCGGAGAGAAATCGCGAAGGCGGAGACGGAGGTTGGTACGGAAGTGAAATGTT 458
||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||
Sbjct 299 AGAATTTCCGGAGAGAAATCGCGGCGGCGGAGACGGAGGTTGGTAGGGACGTGAAATGTT 358
Query 459 TGATGACTGATGCGTTCTTCTGGTTCGCGGCTGATATGGCGACGGAGATAAATGCGTCGT 518
|| ||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 359 TGTTGACTGATGCGTTTTTCTGGTTCGCGGCTGATATGGCGACGGAGATGAATGCATCGT 418
Query 519 GGATTGCGTTTTGGACCGCCGGAGCAAACTCACTCTCTGCTCATCTCTACACAGATCTCA 578
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 419 GGATTGCGTTTTGGACCGCCGGAGCAAACTCGCTCACTGCTCATCTCTACACAGATCTCA 478
Query 579 TCAGAGAAACCATCGGTGTCAAAGAAGTAGGTGAGCGTATGGAGGAGACAATAGGGGTTA 638
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||
Sbjct 479 TCAGAGAAACCATCGGTGTCAAAGAAGTAGGTGGGCGTATGGAGGAGACATTAGGGTTTA 538
Query 639 TCTCAGGAATGGAGAAGATCAGAGTCAAAGATACACCAGAAGGAGTTGTGTTTGGGAATT 698
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 539 TTTCAGGAATGGAGAAGATCAGAGTCAAAGACACACCAGAAGGAGTTGTGTTTGGTAATT 598
Query 699 TAGACTCTGTTTTCTCAAAGATGCTTCATCAAATGGGTCTTGCTTTGCCTCGTGCCACTG 758
|||||||||||||||| |||||||| || |||||||| |||||||| |||||||||||||
Sbjct 599 TAGACTCTGTTTTCTCCAAGATGCTGCACCAAATGGGACTTGCTTTACCTCGTGCCACTG 658
Query 759 CTGTTTTCATCAATTCTTTTGAAGATTTGGATCCTACATTGACGAATAACCTCAGATCGA 818
| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 659 CGGTTTTCATCAATTCTTTTGAAGAACTGGATCCTACATTGACCAATAACCTCAGATCGA 718
Query 819 GATTTAAACGATATCTGAACATCGGTCCTCTCGGGTTATTATCTTCTACATTGCAACAAC 878
||| ||||| || |||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 719 AATTCAAACGTTACCTGAACATTGGTCCTCTCGGGTTATTATCTTCTACATTG---CAAC 775
Query 879 TAGTGCAAGATCCTCACGGTTGTTTGGCTTGGA-TGGAGAAGAGATCTTCTGGTTCTGTG 937
||||||| ||||||||||| ||||||||||||| ||| ||||||||| ||| |||||||
Sbjct 776 TAGTGCACGATCCTCACGGCTGTTTGGCTTGGATTGG-GAAGAGATCCCCTGCTTCTGTG 834
Query 938 GCGTACATTAGCTTTGGTACGGTCATGACACCGCCTCCTGGAGAGCTTGCGGCGATAGCA 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GCGTACATTAGCTTTGGTACGGTCATGACACCGCCTCCTGGAGAGCTTGCGGCGATAGCA 894
Query 998 GAAGGGTTGGAATCGAGTAAAGTGCCGTTTGTTTGGTCGCTTAAGGAGAAGAGCTTGGTT 1057
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 895 GAAGGGTTGGAATCGAGTAAAGTGCCGTTTGTTTGGTCGCTTAAGGAGAAGAACTTGGTT 954
Query 1058 CAGTTACCAAAAGGGTTTTTGGATAGGACAAGAGAGCAAGGGATAGTGGTTCCATGGGCA 1117
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 CATTTACCAAAAGGGTTTTTGGATAGGACAAGAGAGCAAGGGATAGTGGTTCCATGGGCA 1014
Query 1118 CCGCAAGTGGAACTGCTGAAACACGAAG-CAACGGGTGTGTTTGTGACGCATTGTGGATG 1176
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1015 CCGCAAGTGGAACTGCTGAAACA-GAAGGCAACGGGTGTGTTTGTGACGCATTGTGGATG 1073
Query 1177 GAACTCGGTGTTGGAGAGTGTATCGGGTGGTGTACCGATGATTTGCAGGCCATTTTTTGG 1236
||||||||||||||||||||| ||||| ||||| | ||||||||||||||| ||||||||
Sbjct 1074 GAACTCGGTGTTGGAGAGTGTTTCGGGAGGTGTTCTGATGATTTGCAGGCCGTTTTTTGG 1133
Query 1237 GGATCAGAGATTGAACGGAAGAGCGGTGGAGGTTGTGTGGGAGATTGGAATGACGATTAT 1296
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1134 GGATCAGAGATTGAACGGAAGAGCAGTGGAGGTTGTGTGGGAGATTGGAACGACGATTAT 1193
Query 1297 CAATGGAGTCTTCACGAAAGATGGGTTTGAGAAGTGTTTGGATAAAGTTTTAGTTCAAGA 1356
||||||||||||||| |||||||| |||||||||||||||||| |||||| ||||||||
Sbjct 1194 CAATGGAGTCTTCACAAAAGATGGTTTTGAGAAGTGTTTGGATCGAGTTTTGGTTCAAGA 1253
Query 1357 TGATGGTAAGAAGATGAAATGTAATGCTAAGAAACTTAAAGAACTAGCTTACGAAGCTGT 1416
||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||
Sbjct 1254 TGATGGTAAGAAGATGAAATGTAATGCTAAGAAGCTTAAAGAGCTAGGACACGAAGCTGT 1313
Query 1417 CTCTTCTAAAGGAAGGTCCTCTGAGAATTTCAGAGGATTGTTGGATGCAGTTGTAAACAT 1476
|||||| |||||||| ||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1314 CTCTTCGAAAGGAAGTTCCTCTGAGAATTTCGGAGGATTGTTGGATGCAGTTGCGAACAT 1373
Query 1477 TATTT 1481
|||||
Sbjct 1374 TATTT 1378
> Ahg488567 jgi|Araly1|488567|fgenesh2_kg.6__1701__AT5G17040.1
Length=1406
Score = 1206 bits (653), Expect = 0.0
Identities = 1169/1410 (83%), Gaps = 68/1410 (5%)
Strand=Plus/Plus
Query 129 ACTCCCACGTGGCAGTTCTCGCTTTTCCTTTCGGCACTCA-TG-CAGCTCCTCTCCTCAC 186
|||||||||| ||||||||||||||||| ||||||| ||| | ||| || ||||| |
Sbjct 15 ACTCCCACGTCGCAGTTCTCGCTTTTCCATTCGGCAGTCACGGTCAG--GCTATCCTCGC 72
Query 187 CGTCACGCGCCGCCTCGCCTCCGCCTCTCCTTCCACCGTCTTCTCTTTCTTCAACACCGC 246
||||| | ||||||||||||||| |||||||||||||||||||| |||||||||||| |
Sbjct 73 TGTCACCCACCGCCTCGCCTCCGCATCTCCTTCCACCGTCTTCTCCTTCTTCAACACCTC 132
Query 247 ACAATCCAACTCTTCGTTATTTTCCTCCGGTGACGAAGCAGATCGTCCGGCGAACA-TCA 305
||||||||||| ||| ||| || |||| | | | |||||||||||||||| ||
Sbjct 133 ACAATCCAACTTTTCATTA--TT-CTCC--T--C----C-GATCGTCCGGCGAACATTC- 179
Query 306 GAGT--AT-ACGATATTGCCGACGGTGTTCCGGAGGGATACGTGTTTAGCGGGAGA-CCA 361
| || || ||| | | | ||||||||||| |||||||||||| | | || | |||
Sbjct 180 GGGTCCATGACG-T-GT-CTGACGGTGTTCCCGAGGGATACGTG-CTCTCCAGAAATCCA 235
Query 362 CAGGAGGCGATCGAGCTGTTTCTTCAAGCTGCGCCGGAGAATTTCCGGAGAGAAATCGCG 421
||||||||| |||||||||||||| |||| |||||| ||| ||| ||||||||| |||||
Sbjct 236 CAGGAGGCGGTCGAGCTGTTTCTTGAAGCGGCGCCGAAGATTTTTCGGAGAGAACTCGCG 295
Query 422 AAGGCGGAGACGGAGGTTGGTACGG-AAGTGAAATGTTTGATGACTGATGCGTTCTTCTG 480
||||||||| |||||| ||| || |||||| ||| || | || ||||||||| ||||
Sbjct 296 GTGGCGGAGACTGAGGTTAGTA-GGAAAGTGACATGCATGCTTACGGATGCGTTCATCTG 354
Query 481 GTTCGCGGCTGATATGGCGACGGAGAT-AAATGCGTCGTGGATTGCGTTT-TGGACCGCC 538
|||||| || ||||||||| ||||||| ||| | ||||||| |||| ||| |||||| ||
Sbjct 355 GTTCGCTGCGGATATGGCGGCGGAGATGAAA-GTGTCGTGGGTTGC-TTTCTGGACCTCC 412
Query 539 GGAGC-AAACTCACTCTCTGCTCATCTCTACACAGATCTCATCAGAGAAACCATCGGTGT 597
||| | |||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 GGA-CAAAACTCGCTCACTGCTCATCTCTACACAGATCTCATCAGAGAAACCATCGGTGT 471
Query 598 CAAAGAAGTAGGTGAGCGTATGGAGGAGACAATAGGGGTTATCTCAGGAATGGAGAAGAT 657
||||||||||| || |||||||||||| ||| ||||| |||| |||||||||||||||||
Sbjct 472 CAAAGAAGTAGATGGGCGTATGGAGGAAACATTAGGGTTTATTTCAGGAATGGAGAAGAT 531
Query 658 CAGAGTCAAAGATACACCAGAAGGAGTTGTGTTTGGGAATTTAGACTCTGTTTTCTCAAA 717
|||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 532 CAGAGTCAAAGACATACCAGGAGGAGTTGTGTTTGGGAATTTAGACTCTGTTTTCTCAAC 591
Query 718 GATGCTTCATCAAATGGGTCTTGCTTTGCCTCGTGCCACTGCTGTTTTCATCAATTCTTT 777
| ||| || |||||||| |||||||||||||| || ||||| |||| ||| ||||| ||
Sbjct 592 TACGCTGCACCAAATGGGACTTGCTTTGCCTCGGGCGACTGCGGTTTACATGAATTCCTT 651
Query 778 TGAAGATTTGGATCCTACATTGAC-GAATAACCTCAGATCGAGATTTAAACGATATCTGA 836
|||||| || |||||||||||||| | | |||||||| || | ||| ||||| ||| |||
Sbjct 652 TGAAGAATTAGATCCTACATTGACTGTA-AACCTCAGGTCTAAATTCAAACGTTATTTGA 710
Query 837 ACATCGGTCCTCTCGGGTTATTATCTTCTACATTGCAAC-A-A--CT--AGTGCAAGATC 890
||| |||||||| | ||| |||| |||| ||| |||| | | | | |||| ||||
Sbjct 711 GCATTGGTCCTCTAGCGTTGTTATTTTCTCCATCGCAAAGAGAAACACCATTGCATGATC 770
Query 891 CTCACGGTTGTTTGGCTTGGATGGAGAAGAGATCT-TCTGGTTCTGTGGCGTACATTAGC 949
|||||| || || |||||||| |||||| | || | || |||||| ||||||||| ||
Sbjct 771 CTCACGCCTGCTTAGCTTGGATCGAGAAGCGGTCCAT-TGATTCTGTAGCGTACATT-GC 828
Query 950 TTT-GGTACG-GTCATGACACCGCCTCCTGGAGAGCTTGCGGCGATAGCAGAAGGGTTGG 1007
|| |||| | |||||||||||||||||||||||||||| ||| |||||| |||| ||||
Sbjct 829 CTTCGGTA-GAGTCATGACACCGCCTCCTGGAGAGCTTGTGGCAATAGCACAAGGATTGG 887
Query 1008 AATCGAGTAAAGTGCCGTTTGTTTGGTCGCTT-AAGGAGAAGAGCTTGGTTCAGTTACCA 1066
|||||||||||||||| |||||||||||||| ||| ||| || | ||||||| ||||||
Sbjct 888 AATCGAGTAAAGTGCCTTTTGTTTGGTCGCTACAAG-AGATGAACATGGTTCATTTACCA 946
Query 1067 AAAGGGTTTTTGGATAGGACAAGAGAGCAAGGGATAGTGGTTCCATGGGCACCGCAAGTG 1126
||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 947 AAAGGGTTTTTGGATCGGACAAGAGAGCAAGGGATGGTGGTCCCATGGGCACCTCAAGTG 1006
Query 1127 GAACTGCTGAAAC-ACGAAGCAACGGGTGTGTTTGTGACGCATTGTGGATGGAACTCGGT 1185
|| ||||| |||| | ||||||| ||||||||||||| ||||| |||| |||||||| ||
Sbjct 1007 GAGCTGCT-AAACCATGAAGCAATGGGTGTGTTTGTGTCGCATGGTGGGTGGAACTCAGT 1065
Query 1186 GTTGGAGAGTGTATCGGGTGGTGTACCGATGATTTGCAGGCC-ATTTTTTGGGGATCA-G 1243
|||||||||||| |||| |||||||||||||||||||| || ||||| ||||| || |
Sbjct 1066 GTTGGAGAGTGTGTCGGCAGGTGTACCGATGATTTGCAGACCGATTTTC-GGGGACCATG 1124
Query 1244 -AGATTGAACGGAAGAGCGGTGGAGGTTGTGTGGGAGATTGGAATGACGATTATCAATGG 1302
|| | || | |||| | ||||||| ||||||||||||||||||||||||||| || |
Sbjct 1125 CAG-TC-AATGCAAGATCCGTGGAGGCTGTGTGGGAGATTGGAATGACGATTATTAAAGA 1182
Query 1303 A-GTCTTCACGAAAGATGGGTTTGAGAAGTGTTTGGATAAAGTTTTAGTTCAAGATGATG 1361
| || ||||| || ||||| |||||| || |||| ||| ||||| |||||||||||||
Sbjct 1183 AAGT-TTCACCAAGGATGGATTTGAGGAGAGTTTAGATCGGGTTTTGGTTCAAGATGATG 1241
Query 1362 GTAAGAAGATGAAATGT-AATGCTAAGAAACTTAAAGAACTAGCTTACGAAGCTGTCTCT 1420
| ||||||||||| || ||| ||||||| |||||||||||||| | || |||||||||
Sbjct 1242 GCAAGAAGATGAAG-GTTAATTCTAAGAAGCTTAAAGAACTAGCACAAGACGCTGTCTCT 1300
Query 1421 TCTAAAGGAAGGTCCTCTGAGAATTTCAGAGGATTGTTGGATGCAGTTGTAAACATTATT 1480
| ||||||| |||| | ||||||||| ||| |||||||| | |||||| || | | ||
Sbjct 1301 ACGGAAGGAAGCTCCTTTAAGAATTTCAAAGGTTTGTTGGACGAAGTTGTGAA-AGT-TT 1358
Query 1481 TGAATGTGAAAT-GATTTTGGACAAATAAA 1509
|||| |||| || |||||| |||||||
Sbjct 1359 --AATGC-AAATTGACTTTGGATAAATAAA 1385
> Ahg313693 jgi|Araly1|313693|fgenesh1_pm.C_scaffold_1002473
Length=1365
Score = 1164 bits (630), Expect = 0.0
Identities = 1135/1372 (83%), Gaps = 62/1372 (5%)
Strand=Plus/Plus
Query 113 TCCGACCCAACCAGAGACTCCCACGTGGCAGTTCTCGC-TT-TT--CCTTTCGGCACTCA 168
||||| |||| ||||||||||||||||||||||||||| || || || || ||| ||||
Sbjct 13 TCCGAGCCAATCAGAGACTCCCACGTGGCAGTTCTCGCGTTCTTCCCCGTT-GGCGCTCA 71
Query 169 TGCAGCTCCTCTCCTCA-CCGTCACGCGCCGCCTCGCCTCCGCCTCTCCTTCCACCGTCT 227
||| | |||||| || | |||| |||||||| |||||| ||||| |||| |||||| |||
Sbjct 72 TGCCGGTCCTCT-CTTAGCCGTTACGCGCCGTCTCGCCGCCGCCGCTCCCTCCACCATCT 130
Query 228 TCTCTTTCTTCAACACCGCACAATCCAACTCTTCGTTATTTTCCTCCGGTGACGAAGCAG 287
| ||||||||||||||||||| ||| ||| |||| | | || |||| ||| | ||
Sbjct 131 TTTCTTTCTTCAACACCGCACGATCAAACGCTTC-CT-TGTT-CTCC---GAC--A-TAG 181
Query 288 ATCGTCCGGCGAACATCAGAGTATACGATATTGCCGACGGTGTTCCGGAGGGATA-CGTG 346
||| ||| | |||||||| || |||| | || |||||||||||||||||| | | ||
Sbjct 182 ATCATCCAGAAAACATCAGGGTCCACGACGTCGCTGACGGTGTTCCGGAGGGA-ACCATG 240
Query 347 TTTAGCGGGAGACCACAGGAGGCGATCGAGCTGTTTCTTC-AAGCTGCGCC-GGAGAATT 404
| | |||||| |||| |||| | |||||||||||| || |||| || || | |||||
Sbjct 241 CTAACCGGGAGTCCACTGGAGATGCTCGAGCTGTTTC-TCGAAGCGGCTCCACG-GAATT 298
Query 405 TCCGGAGAGAAATCGCGAAGGCGGAGACGGAGGTTGGTACGGAAGTGAAATGTTTGATGA 464
||||||||||||| ||| ||| ||||| || || |||| | |||||| || || | |
Sbjct 299 TCCGGAGAGAAATGGCGGCGGCAGAGACTGAAGTCGGTAAGAAAGTGACATCCATGCTAA 358
Query 465 CTGATGCGTTCTTCTGGTTCGCGGCTGATATGGC-GACGGAGATAAATGCGTCGTGGATT 523
| ||||| |||||||||||||| || |||||||| | | ||||| || || | ||| ||
Sbjct 359 CAGATGCCTTCTTCTGGTTCGCAGCGGATATGGCTG-CTGAGATGAAGGCCACTTGGGTT 417
Query 524 GCGTTTTGGACCGCCGGAGCAAACTCACTCTCTGCTCATCTCTACACAGATCTCATCAGA 583
||||| ||| ||| |||||| ||||| |||| ||||||||| ||||| ||||||||||||
Sbjct 418 GCGTTCTGGGCCGGCGGAGCGAACTCTCTCTGTGCTCATCTTTACACTGATCTCATCAGA 477
Query 584 GAAACCATCGGTGTCAAAGAAGTAGGTGAGCGTATGGAGGAGACAATAGGGGTTAT-CTC 642
||||||||||| ||| | |||||| || ||||||||| |||||| ||||| |||| | |
Sbjct 478 GAAACCATCGGCGTC--A-AAGTAGATGTGCGTATGGAAGAGACATTAGGGTTTATAC-C 533
Query 643 AGGAATGGAGAAGAT-CAGAGTCAAAGATACACCAGAAGG-AGTTGTGTTTGGGA-ATTT 699
|||||||||||| | |||||| ||||||| ||||| ||| |||||| ||| | | ||||
Sbjct 534 AGGAATGGAGAA-TTACAGAGTTAAAGATATACCAG-AGGAAGTTGTATTT-GAAGATTT 590
Query 700 AGACTCTGTTTTCTCAAA-GATGCT-TCATCAAATGGGTCTTGCTTTGCCTCGTGCCACT 757
|||||||||||| |||| | | || | | |||||| |||||||||| ||||||||| ||
Sbjct 591 GGACTCTGTTTTCCCAAAGGCT-CTAT-ACCAAATGAGTCTTGCTTTACCTCGTGCCTCT 648
Query 758 GCTGTTTTCATCAATTCTTTTGAAGATTTGGATCCTACATTGACGAATAACCTCAGATCG 817
|| |||||||||| ||| ||||||||||| || ||||||||||| ||||||| |||||
Sbjct 649 GCGGTTTTCATCAGTTCCTTTGAAGATTTAGAACCTACATTGACCCATAACCTAAGATCC 708
Query 818 AGATTTAAACGATATC-TGAACATCGGTCCTCTCGGGTTATTATCTTCTACATTGCAACA 876
| | ||||||| | || ||||||||| |||||| |||||||||||||||| | | ||
Sbjct 709 AAACTTAAACG-TTTCTTGAACATCGCCCCTCTCACGTTATTATCTTCTACA-T-CGAC- 764
Query 877 ACTAGTGCAAGATCCTCACGGTTG-TTTGGCTTGGATGGAGAAGAGATCTTCTGGTTCTG 935
|||||||| |||||||| || || ||| |||||||||||||||||||| ||| ||| |
Sbjct 765 ACTAGTGCGGGATCCTCATGGCTGCTTT-GCTTGGATGGAGAAGAGATCACCTGCTTCCG 823
Query 936 TGGCGTACATTAGCTTTGGTACGGTCAT-GACACCGCCTCCTGGAGAGCTTGCGGCGATA 994
| |||||||||||||| || || ||||| || ||||||||||| |||||||| |||||||
Sbjct 824 TAGCGTACATTAGCTTCGGCACCGTCATGGA-ACCGCCTCCTGTAGAGCTTGTGGCGATA 882
Query 995 GCAGAAGGGTTGGAATCGAGTAAAGTGCCGTTTGTTTGGTCGCTTAAGGAGAAGAGCTTG 1054
||| |||| ||||||||||| |||||||||||||||||||||||||||||||||| | ||
Sbjct 883 GCACAAGGCTTGGAATCGAGCAAAGTGCCGTTTGTTTGGTCGCTTAAGGAGAAGAACATG 942
Query 1055 GTTCAGT-TACCAAAAGGGTTTTTGGATAGGACAAGAGAGCAAGGGATAGTGGTTCCATG 1113
||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 943 GTTCA-TCTACCAAAAGGGTTTTTGGATCGGACAAGAGAGCAAGGGATAGTGGTTCCATG 1001
Query 1114 GGCACCGCAAGTGGAACTGCTGAAACACGAAGCAACGGGTGTGTTTGTGACGCATTGTGG 1173
||| || ||||||||||||||||||||||| ||||| |||||| |||||| ||||||||
Sbjct 1002 GGCTCCCCAAGTGGAACTGCTGAAACACGAGGCAACAGGTGTGAATGTGACACATTGTGG 1061
Query 1174 ATGGAACTCGGTGTTGGAGAGTGTATCGGGTGGTGTACCGATGATTTGCAGGCC-ATTTT 1232
|||||||||||||||||||||||| |||| ||||||||||||||| |||| || |||||
Sbjct 1062 ATGGAACTCGGTGTTGGAGAGTGTGTCGGCAGGTGTACCGATGATTGGCAGACCGATTTT 1121
Query 1233 TTGGG-GATCAGAGATTGAACGGAAGAGCGGTGGAGGTTGTGTGGGAGATTGGAATGACG 1291
|| ||| | || | ||||||||||| ||||||||||||||| || ||||||||| |
Sbjct 1122 --GGCTGATAATAGGCTCAACGGAAGAGCAGTGGAGGTTGTGTGGAAGGTTGGAATGATG 1179
Query 1292 ATT-ATCAATGGAGTCTTCACGAAAGATGGG-TTTGAGAAGTGTTTGGATAAAGTTTTAG 1349
|| || |||||||||||||||||||| ||| ||||||||||||||| || ||||||| |
Sbjct 1180 ATGGAT-AATGGAGTCTTCACGAAAGA-GGGATTTGAGAAGTGTTTGCATCAAGTTTTGG 1237
Query 1350 TTCAAGATGATGGTAAGAAGATGAAATG-TAATGCTAAGAAACTTAAAGAACTAGCTT-A 1407
|||| ||||||||||||| |||||| | |||||| ||||| ||||||||| | || |
Sbjct 1238 TTCATGATGATGGTAAGACGATGAAG-GCTAATGCCAAGAAGCTTAAAGAAAAA-CTCCA 1295
Query 1408 CGAAGCTGTCTCTTCTAAAGGAAGGTCCTCTGAGAATTTCAGAGGATTGTTG 1459
|||| ||||||| |||||||| |||| ||||||||||| || |||||||
Sbjct 1296 AGAAGATGTCTCTAAGAAAGGAAGCTCCTTTGAGAATTTCAAAGTATTGTTG 1347
> Ahg906050 jgi|Araly1|906050|Al_scaffold_0003_3178
Length=396
Score = 331 bits (179), Expect = 8e-90
Identities = 228/251 (91%), Gaps = 6/251 (2%)
Strand=Plus/Plus
Query 354 GGAGACCACAGGAGGCGATCGAGCTGTTTCTTCAAGCTGCGCCGGAGAATTTCCGGAGAG 413
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 149 GGAGACCACAAGAGGCGATCGAGCTGTTTCTAGAAGCTGCGCCGGAGAATTTCCGGAGAG 208
Query 414 AAATCGC-GAAGGCGGAGACGGAGGTTGGTACG-GAAGTGAAATGTTTGATGACTGATGC 471
||||||| | | | ||||| ||||||||||| | ||| ||||||||||| ||||| ||||
Sbjct 209 AAATCGCGGCA-GAGGAGAAGGAGGTTGGTA-GAGAATTGAAATGTTTGTTGACTAATGC 266
Query 472 GTTCTT-CTGGTTCGCGGCTGATATGGCGACGGAGATAAATGCGTCGTGGATTGCGTTTT 530
||| || || ||||||||||||||||||||||||||| ||||| | |||| |||||||||
Sbjct 267 GTT-TTCCTCGTTCGCGGCTGATATGGCGACGGAGATGAATGCATTGTGGGTTGCGTTTT 325
Query 531 GGACCGCCGGAGCAAACTCACTCTCTGCTCATCTCTACACAGATCTCATCAGAGAAACCA 590
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 326 GGACCGCCGGAGCAAACTCGCTCACTGCTCATCTCTACACAGATCTCATCAGAGAAACCA 385
Query 591 TCGGTGTCAAA 601
||| |||||||
Sbjct 386 TCGATGTCAAA 396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57021096765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5