BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17220.1
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488585 jgi|Araly1|488585|fgenesh2_kg.6__1719__AT5G17220.1 1227 0.0
> Ahg488585 jgi|Araly1|488585|fgenesh2_kg.6__1719__AT5G17220.1
Length=772
Score = 1227 bits (664), Expect = 0.0
Identities = 741/777 (95%), Gaps = 9/777 (1%)
Strand=Plus/Plus
Query 5 ATATTAATAAGTGCATATAGTAAAATCTTTCTTATTCGTAACAAAGTTATTGT-AAACTT 63
||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| ||| ||
Sbjct 1 ATATTAAAAAGAGCATATAGTAAAATCTTTCTTCTTCGTAACAAAGTTATTGTCAAA-TT 59
Query 64 ATAGAATGGTTGTGAAACTATATGGACAGGTAACAGCAGCTTGTCCACAAAGAGTCTTGC 123
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 60 ATAGAATGGTTGTGAAACTATATGGACAGGTAACGGCAGCTTGTCCACAAAGAGTTTTGC 119
Query 124 TTTGTTTTCTCGAGAAAGGAATTGAATTTGAGATTATTCATATCGATCTTGATACATTTG 183
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 120 TTTGTTTTCTCGAGAAAGAAATTGAATTTGAGATTATTCATATCGATCTTGATACATTAG 179
Query 184 AGCa-aaaaaaaCCAGAACATCTTCTTCGTCAGCCATTTGGTCAAGTTCCAGCCATAGAA 242
|||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 180 AGCAGAAAAAAA-CAGAACATCTTCTTCGTCAGCCATTTGGCCAAGTTCCAGCCATAGAA 238
Query 243 GATGGAGATTTCAAGCTTTTTGAATCACGAGCCATCGCGAGATACTACGCTACCAAGTTC 302
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
Sbjct 239 GATGGAGATTTCAAGCTTTTTGAATCACGAGCCATTGCGAGATACTACGCGACCAAGTAC 298
Query 303 GCGGACCAAGGCACGAACCTTTTGGGCAAGTCTCTAGAGCACCGAGCCATCGTGGACCAG 362
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 299 GCGGACCAAGGCACGAACCTGTTAGGCAAGTCTCTAGAGCATCGAGCCATCGTGGACCAG 358
Query 363 TGGGCTGACGTGGAGACCTATTACTTCAACGTTCTGGCCCAACCCCTCGTGATTAACCTA 422
|||||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||
Sbjct 359 TGGGCTGACGTGGAGACCCATTACTTCAACGCTCTGGCCCATCCCATCGTGATTAACCTA 418
Query 423 ATCATCAAGCCTAGGTTAGGCGAGAAATGTGACGTCGTTTTGGTCGAGGATCTCAAAGTG 482
|||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 419 ATCATCAAGCCTAGATTAGGCGAAAAATGTGACGTCGTTTTGGTCGAGGAGCTCAAAGTG 478
Query 483 AAGCTAGGAGTGGTCTTGGACATATACAATAACCGGCTTTCTTCGAACCGGTTTTTGGCT 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AAGCTAGGAGTGGTCTTGGACATATACAATAACCGGCTTTCTTCGAACCGGTTTTTGGCT 538
Query 543 GGTGAAGAATTCACTATGGCTGATTTGACGCACATGCCGGCGATGGGGTACTTGATGAGT 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GGTGAAGAATTCACTATGGCTGATTTGACGCACATGCCGGCGATGGGGTACTTGATGAGT 598
Query 603 ATAACCGATATAAACCAGATGGTTAAGGCTCGGGGTAGTTTTAACCGGTGGTGGGAAGAG 662
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 599 ATAACCGATATAAACCAGATGGTTAAGGCTCGTGGTAGTTTTAACCGGTGGTGGGAAGAG 658
Query 663 ATTTCGGATAGACCGTCTTGGAAGAAGCTTATGGTGCTGGCTGGTCACTGAATTAGCTCC 722
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 659 ATTTCGGATAGACCGTCTTGGAAGAAGCTTATGATGCTGGCTGGTCATTGAATTAGCTCG 718
Query 723 AATTTATGATGATCTGAAGAACCAAATAAGCTTTATAG-TTT-CTGTTTTATGTTTG 777
|||||||||||||| | ||||||||||||||||||| ||| ||||||| ||||||
Sbjct 719 AATTTATGATGATC-G--GAACCAAATAAGCTTTATATATTTTCTGTTTTCTGTTTG 772
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28668433584
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5