BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17230.3
Length=1943
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941228 jgi|Araly1|941228|scaffold_601772.1 1308 0.0
> Ahg941228 jgi|Araly1|941228|scaffold_601772.1
Length=1312
Score = 1308 bits (708), Expect = 0.0
Identities = 767/796 (96%), Gaps = 2/796 (0%)
Strand=Plus/Plus
Query 944 GTTTGGTGTAGAAGAACTGATGAACTTGTGGATGGGCCAAATGCTTCACATATAACTCCC 1003
|||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 519 GTTTGGTGTAGAAGAACTGATGAACTCGTCGATGGGCCTAATGCTTCACATATAACTCCC 578
Query 1004 ATGGCTTTAGATAGATGGGAAGCAAGGTTAGAAGATCTTTTCCGTGGTCGTCCTTTCGAT 1063
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 579 ATGGCTTTAGATAGATGGGAAGCAAGGTTAGAAGATCTTTTCCGTGGCCGTCCTTTCGAT 638
Query 1064 ATGCTTGATGCTGCTCTCGCTGATACAGTTGCTAGATACCCGGTCGATATTCAGCCATTT 1123
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 ATGCTAGATGCTGCTCTTGCTGATACAGTTGCTAGATACCCGGTCGATATTCAGCCATTT 698
Query 1124 CGAGACATGATCGAAGGAATGAGAATGGACTTGAAGAAATCGAGATACCAGAACTTCGAT 1183
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 699 CGAGACATGATCGAAGGAATGAGAATGGACTTGAGGAAATCGAGATACCAGAACTTCGAT 758
Query 1184 GATCTATACCTTTACTGCTACTACGTCGCTGGAACCGTCGGATTGATGAGCGTTCCGGTT 1243
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 759 GATCTATACCTTTACTGCTACTATGTCGCTGGAACCGTCGGATTGATGAGCGTTCCGGTT 818
Query 1244 ATGGGAATCGATCCTAAGTCGAAAGCAACAACCGAAAGTGTTTACAACGCTGCCTTGGCC 1303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 ATGGGAATCGATCCTAAGTCGAAAGCAACAACCGAAAGTGTTTACAACGCTGCCTTGGCC 878
Query 1304 CTTGGTATAGCCAATCAGCTTACTAACATACTCAGAGACGTAGGCGAAGATGCGAGAAGA 1363
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 879 CTTGGTATAGCCAATCAGCTTACCAACATACTCAGAGACGTTGGCGAAGATGCGAGAAGA 938
Query 1364 GGAAGGGTTTATCTGCCTCAGGATGAATTGGCTCAGGCTGGTCTTTCAGATGAAGACATA 1423
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 939 GGAAGGGTTTATCTGCCTCAGGATGAATTGGCTCAAGCTGGTCTTTCAGATGAAGACATA 998
Query 1424 TTCGCCGGAAAAGTAACTGATAAATGGAGAAACTTCATGAAAATGCAGCTTAAACGAGCA 1483
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 999 TTCGCCGGAAAAGTCACTGATAAATGGAGAAACTTCATGAAAATGCAGCTTAAGCGAGCA 1058
Query 1484 AGAATGTTCTTCGACGAAGCTGAGAAAGGCGTCACCGAGCTCAGTGCCGCTAGCAGATGG 1543
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1059 AGAATGTTCTTCGATGAAGCTGAGAAAGGCGTCACCGAGCTCAGCGCCGCTAGCAGATGG 1118
Query 1544 CCTGTATGGGCTTCATTGCTATTGTACAGGAGAATACTGGACGAGATTGAAGCGAATGAT 1603
|| |||||||| || ||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1119 CCAGTATGGGCATCGTTGCTATTGTACAGGAGAATATTGGACGAGATTGAAGCGAACGAT 1178
Query 1604 TACAACAATTTTACTAAGAGAGCTTATGTGGGGAAAGTCAAGAAAATTGCAGCTTTGCCA 1663
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 TACAACAATTTCACTAAGAGAGCTTATGTGGGGAAAGTCAAGAAAATTGCAGCTTTGCCA 1238
Query 1664 TTGGCTTATGCTAAATCAGTACTAAAGACTTCAAGTTCAAGACTATCGATATGAGAGCGA 1723
||||| |||||||||||||| |||||||||||||| |||||| |||| |||||| |||
Sbjct 1239 TTGGCGTATGCTAAATCAGTGCTAAAGACTTCAAGCTCAAGATTATCAATATGAT--CGA 1296
Query 1724 GAGGAAAGTGGAACAA 1739
||||||||||||||||
Sbjct 1297 GAGGAAAGTGGAACAA 1312
Score = 797 bits (431), Expect = 0.0
Identities = 494/524 (94%), Gaps = 5/524 (1%)
Strand=Plus/Plus
Query 378 TCTCTCACGCGCTCAAGAACTTGAGTATGTCTTCTTCTGTAGCAGTGTTATGGGTTGCTA 437
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCACTCTCTCAAGAACTTGAGTATGTCTTCTTCTGTAGCAGTGTTATGGGTTGCTA 60
Query 438 CTTCTTCTCTAAATCCAGACCCAATGAACAATTGTGGGTTGGTAAGGGTTCTAGAATCTT 497
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 CTTCTTCTCTGAATCCTGACCCAATGAACAATTGTGGGTTGGTAAGAGTTCTAGAATCTT 120
Query 498 CTAGACTGTTCTCTCCT-TGTCAGAATCAGAGACTAAACAAAGGTAAGAAGAAGCAGATA 556
||||| ||||||||||| | |||||||||||||||||||||||||| | |||||||| |
Sbjct 121 CTAGAATGTTCTCTCCTCT-TCAGAATCAGAGACTAAACAAAGGTAGGTGGAAGCAGACA 179
Query 557 CCAACTTGGAGTTCTTCTTTTGTAAGGAACCGAAGTAGAAGAATTGGTGTTGTGTCTTCA 616
|||||||||||||||||| |||| ||||| ||||||||||| ||||||||||||||||
Sbjct 180 CCAACTTGGAGTTCTTCT---GTAATGAACCCAAGTAGAAGAAGTGGTGTTGTGTCTTCA 236
Query 617 AGCTTAGTAGCAAGTCCTTCTGGAGAGATAGCTCTTTCATCTGAAGAGAAGGTTTACAAT 676
|| ||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||||
Sbjct 237 AGTTTAGTAGCAAGTCCTTCAGGAGAGATAGCCCTCTCATCAGAAGAGAAGGTTTACAAT 296
Query 677 GTTGTGTTGAAACAAGCTGCTTTGGTGAACAAACAGCTAAGGTCTTCTTCTTATGACCTT 736
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 297 GTTGTGCTGAAACAAGCTGCTTTGGTGAACAAACAGCTAAGGTCTTCTTCTTATGATCTT 356
Query 737 GATGTGAAGAAACCACAAGATGTTGTTCTTCCTGGGAGTTTGAGTTTGTTGGGTGAAGCT 796
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 357 GATGTGAAGAAACCACAAGATGTTGTTCTTCCAGGGAGTTTGAGTTTGTTGGGTGAAGCT 416
Query 797 TATGATCGATGCGGTGAAGTTTGCGCTGAATATGCTAAGACGTTTTATCTTGGAACTTTG 856
|||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 417 TATGATCGATGCGGCGAAGTTTGCGCTGAATATGCTAAAACGTTTTATCTCGGAACTTTG 476
Query 857 CTTATGACACCCGAAAGGCGAAAGGCGATTTGGGCAATCTACGT 900
||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 477 CTTATGACACCCGAAAGGCGAAAGGCGATTTGGGCTATCTACGT 520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73018999665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5