BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17300.1
Length=1839
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488595 jgi|Araly1|488595|fgenesh2_kg.6__1729__AT5G17300.1 2065 0.0
> Ahg488595 jgi|Araly1|488595|fgenesh2_kg.6__1729__AT5G17300.1
Length=1702
Score = 2065 bits (1118), Expect = 0.0
Identities = 1343/1447 (93%), Gaps = 34/1447 (2%)
Strand=Plus/Plus
Query 395 TTTCCTTTTCTGTGTTCCACACCTTTCGAGtttttttttGTTTTCCTCCGCCGAGATCTT 454
|||||||||||| |||||| ||| |||||||||||||||||||||||||| |||||||||
Sbjct 282 TTTCCTTTTCTGCGTTCCAGACC-TTCGAGTTTTTTTTTGTTTTCCTCCGGCGAGATCTT 340
Query 455 AATCCGGGAAGTTATGGCGTCGTCTCCGTTGACTGCAAATGTTCAGGGTAC-CAAC-GCT 512
||||||||||||||| |||||||| |||||||||| |||||||| ||| | | ||
Sbjct 341 TATCCGGGAAGTTATGACGTCGTCTACGTTGACTGCGAATGTTCA-GGT-CTGGTCTCCT 398
Query 513 TCTTTGAGGAATAGAGATGAAGAAACTGCAGACAAGCAGATACAATTCAATGACCAAAGT 572
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 CCTTCGAGGAATAGAGATGAAGAAACTGCAGACAAGCAGATACAATTCAATGACCAAAGT 458
Query 573 TTTGGGGGAAATGACTATGCACCCAAGGTACGGAAGCCATACACGATAACAAAagagaga 632
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 459 TTTGGGGGAAATGACTATGCACCCAAGGTACGGAAACCATACACGATAACAAAAGAAAGA 518
Query 633 gagagaTGGACAGATGAAGAGCACAAGAAGTTTGTTGAAGCCTTGAAATTATACGGGCGA 692
||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 519 GAGAGATGGACAGATGAAGAGCATAAGAAGTTTGTCGAAGCCTTGAAATTGTACGGGCGA 578
Query 693 GCTTGGAGACGAATAGAAGAACATGTGGGCTCAAAGACCGCAGTTCAGATTCGAAGCCAT 752
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 GCATGGAGGCGAATAGAAGAACATGTGGGCTCAAAGACCGCAGTTCAGATTCGAAGCCAT 638
Query 753 GCTCAGAAGTTTTTCTCTAAGGTTGCTCGAGAAGCAACTGGAGGTGATGGGAGCTCAGTA 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 GCTCAGAAGTTTTTCTCTAAGGTTGCTCGAGAAGCAACTGGAGGTGATGGGAGCTCAGTA 698
Query 813 GAGCCGATTGTAATACCTCCTCCTCGTCCCAAGAGAAAGCCAGCGCATCCGTACCCTCGT 872
||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 699 GAGCCAATTGTGATACCGCCTCCTCGTCCCAAGAGAAAGCCAGCGCATCCTTACCCTCGT 758
Query 873 AAGTTTGGGAACGAGGCAGATCAAACAAGTAGATCGGTTTCTCCCTCAGAACGTGATA-C 931
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 759 AAGTTTGGGAACGAGGCAGATCAAACAAGTGGATCGGTTTCTCCCTCAGAACGTGACAAC 818
Query 932 TCAATCTCCAACCTCTGTGTTGTCCACTGTTGGATCAGAAGCATTGTGTTCCCTTGATTC 991
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 819 -CAATCTCCAACCTCTGTGTTGTCCACTCTTGGATCAGAAGCATTGGGTTCCCTTGATTC 877
Query 992 GAGTTCACCCAATCGAAGCTTGTCCCCAGTTTCTTCTGCATCACCACCAGCTGCTCTTAC 1051
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 878 GAGTTCACCCAATCGAAGCTTGTCCCCAGTATCTTCTGCATCACCACCAGCTGCTCTTAC 937
Query 1052 AACCACTGCAAATGCACCTGAAGAGCTTGAGACTCTGAAGCTGGAGTTGTTTCCTAGTGA 1111
||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 938 AACTACTGCAAATGCACCTGAAGAGCTTGAGACTCTGAAGCTGGAGTTGTTTCCAAGAGA 997
Query 1112 GAGACTCTTAAACAGGGAGAGCTCGATCAAGGAACCAACGAAGCAAAGTCTTAAACTCTT 1171
|||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 998 GAGACTCTTAAATAGAGAGAGCTCAATCAAGGAACCAACGAAGCAAAGCCTTAAACTCTT 1057
Query 1172 TGGGAAGACAGTTTTGGTATCTGATTCAGGCATGTCCTCTTCTCTAACAACTTCAACATA 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1058 TGGGAAGACAGTTTTGGTATCTGATTCAGGCATGTCCTCTTCTCTAACAACTTCAACTTA 1117
Query 1232 TTGTAAATCCCCAATTCAGCCATTACCACGGAAACTCTCATCATCCAAGACACTACCCAT 1291
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||
Sbjct 1118 TTGTAAATCCCCAATTCAGCCATTACCACGGAAACTCTCATCATCCAAAACATTACCAAT 1177
Query 1292 AATAAGAAACTCACAAGAAGAACTCTTGAGCTGCTGGATACAAGTCCCTCTTAAGCAAGA 1351
|||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1178 TATAAGAAACTCACAAGAAGAGCTCTTGAGTTGTTGGATACAAGTCCCTCTTAAGCAAGA 1237
Query 1352 AGATGTGGAAAATAGATGTTTGGATTCAGGAAAGGCTGTCCAAAACGAAGGATCATCGAC 1411
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1238 AGATGTGGAAAATAGATGTTTAGATTCAGGAAAGGCTGTCCAAAACGAAGGATCATCGAC 1297
Query 1412 TGGATCAAACACTGGTTCGGTGGATGATACGGGACACACGGAAAAGACCACAGAACCCGA 1471
||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||
Sbjct 1298 TGGATCAAACACTGGTTCGGTGGATGATACGGGACACACTGACAAGACCTCAGAACCCGA 1357
Query 1472 AACAATGCTATGTCAATGGGAGTTTAAACCAAGTGAGAGGTCTGCATTTTCTGAGCTCAG 1531
||||||| ||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 1358 AACAATGGTATGTCAATGGGAGTTTAAACCAAGCGAAAGGTCTGCATTTTCTGAGCTAAG 1417
Query 1532 AAGAACAAACTCCGAGTCAAATTCAAGAGGATTTGGTCCATACAAGAAGAGAAAGATGGT 1591
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1418 AAGAACAAACTCCGAGTCAAATTCAAGAGGATTTGGTCCGTACAAGAAGAGAAAGATGGT 1477
Query 1592 AACAGAAGAAGAAGA-GCATGAGATTCATCTCCACTTATAACACATTTTCTTACGTACCC 1650
||||||||||||||| | | ||||||| ||||||||||||||||||||||| | ||||||
Sbjct 1478 AACAGAAGAAGAAGAAGAA-GAGATTCGTCTCCACTTATAACACATTTTCTCAGGTACCC 1536
Query 1651 TAAAGAAGAGACTTTAAAT-TTACTATTCATTCGACTTTCTAAGTTTTCATCAATGTAAT 1709
|||||||||||| | || | || | || || | | | | | |||| | ||| ||
Sbjct 1537 TAAAGAAGAGACCT-AAGTGTT-C-AT-CAAT-G--TAT-T---TTTTG-T---TGTTAT 1581
Query 1710 TTTTGTTGTTGTTTCATTGTTTTCTCTTGAGGTGTTTGTTCTCTAGGCTAAAATTTTCTG 1769
| |||||||||||||||||||||| |||| ||||||| | |||||||||||||||||
Sbjct 1582 T---GTTGTTGTTTCATTGTTTTCTCC-GAGGGGTTTGTTGTTTAGGCTAAAATTTTCTG 1637
Query 1770 CAAAAGTTTGTAACTGTAAAACTCGTGTACAATTTAT---ACAGTTAAATCTAATGATTA 1826
||||| ||||||||||||||| ||||||||||||| | |||||||| |||| ||||||
Sbjct 1638 CAAAA-TTTGTAACTGTAAAATTCGTGTACAATTTTTTTTACAGTTAA-TCTAGTGATTA 1695
Query 1827 TGAGATC 1833
|||||||
Sbjct 1696 TGAGATC 1702
Score = 169 bits (91), Expect = 8e-41
Identities = 120/133 (90%), Gaps = 6/133 (5%)
Strand=Plus/Plus
Query 207 AAATCTCTGGTTTGCTGG-AAGttttttttCCGGAAGGTGGAAGC-TTAGATTGGTTCTG 264
||| ||| | |||||||| || ||||||||||||||||||||| ||||||||||||||
Sbjct 139 AAAGCTCCGTTTTGCTGGTAA---TTTTTTCCGGAAGGTGGAAGCTTTAGATTGGTTCTG 195
Query 265 ATTTCAGAAGCAAATCGTTTGTTGTTGCCTAAGTAAACCGAATCAATTTATGGGATCTAT 324
||||||||||||||||||||||| || ||||| |||| ||||||||||||||||||||||
Sbjct 196 ATTTCAGAAGCAAATCGTTTGTTTTTACCTAAATAAATCGAATCAATTTATGGGATCTAT 255
Query 325 AGAAACAGACGGA 337
||||||||| |||
Sbjct 256 AGAAACAGA-GGA 267
Score = 156 bits (84), Expect = 6e-37
Identities = 119/136 (88%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 31 ttctctctgttttcttcttcttcCGCCGAATCAGAAAGCTTGTCTTTTTCTTTACTCCGG 90
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCTCTCTGCTTTCTTCTTCCTCCGCCGAATCAGAAAGCTTGTCTTTTTCTTTACTCCGG 60
Query 91 CTACCAAAACTTCTCGGAGTTTCTCTGAGAGTTTCATTTCCGACCTTCTTCTTATCCTTA 150
| | || | ||||||||| ||||||||||| |||||| |||||||||||||||| ||
Sbjct 61 CGAGCATAG-TTCTCGGAGAATCTCTGAGAGTCTCATTTTCGACCTTCTTCTTATCTTTC 119
Query 151 TTTGCGGCAAGA-TTT 165
| ||| || ||| |||
Sbjct 120 TCTGCAGCGAGAGTTT 135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69057614185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5