BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G17380.1
Length=1906
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488603 jgi|Araly1|488603|fgenesh2_kg.6__1737__AT5G17380.1 2832 0.0
> Ahg488603 jgi|Araly1|488603|fgenesh2_kg.6__1737__AT5G17380.1
Length=1853
Score = 2832 bits (1533), Expect = 0.0
Identities = 1738/1836 (95%), Gaps = 17/1836 (1%)
Strand=Plus/Plus
Query 27 ATGGCGGATAAATCAGAAACCACTCCACCGTCAATTGATGGCAACGTTCTCGTGGCCAAG 86
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 ATGGCGGATAATTCAGCAACCACTCCACCGTCAATTGATGGCAACGTTCTCGTGGCCAAG 61
Query 87 TCACTCTCTCATCTCGGCGTAACCCACATGTTCGGCGTCGTTGGAATCCCCGTCACGTCT 146
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 62 TCACTATCTCATCTCGGCGTCACCCACATGTTCGGCGTCGTGGGAATCCCCGTCACGTCT 121
Query 147 CTAGCTAGCCGAGCTATGGCTTTAGGTATACGTTTCATCGCCTTCCACAACGAACAATCC 206
|||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 122 CTAGCTAGCCGAGCCATGGCTCTAGGCATACGTTTCATCGCCTTCCACAACGAACAATCC 181
Query 207 GCTGGTTACGCCGCTTCAGCTTACGGTTACCTCACGGGTAAACCGGGTATCCTT-TTAAC 265
|| || ||||||||||| |||||||||||||||||||||||||| ||||||||| || ||
Sbjct 182 GCCGGATACGCCGCTTCTGCTTACGGTTACCTCACGGGTAAACCCGGTATCCTTCTT-AC 240
Query 266 GGTTTCGGGTCCGGGTTGTGTTCATGGGCTCGCGGGTCTTTCCAACGCTTGGGTTAATAC 325
|||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||
Sbjct 241 GGTTTCGGGTCCGGGTTGCGTTCACGGGCTCGCGGGTCTTTCCAACGCTTGGGCTAATAC 300
Query 326 ATGGCCGATGGTGATGATCTCTGGTTCTTGTGATCAGAGAGATGTTGGTCGTGGAGATTT 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGGCCGATGGTGATGATCTCTGGTTCTTGTGATCAGAGAGATGTTGGTCGTGGAGATTT 360
Query 386 CCAGGAGCTTGATCAGATCGAAGCGGTTAAAGCTTTCTCGAAATTATCAGAGAAAGCGAA 445
|||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||
Sbjct 361 CCAGGAGCTTGATCAGATCGAAGCTGTGAAAGCTTTTTCGAAATTATCGGAGAAAGCGAA 420
Query 446 AGATGTTCGTGAAATCCCTGATTGTGTTTCTAGGGTTTTGGATCGAGCTGTTTCGGGTCG 505
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 421 AGATGTTCGTGAAATCCCTAATTGTGTTTCTAGGGTTTTGGATCGAGCTGTTGCGGGTCG 480
Query 506 ACCCGGTGGGTGTTATCTGGATATTCCGACTGATGTGTTGCGTCAGAAGATATCGGAATC 565
||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 481 ACCCGGTGGGTGTTATCTGGATATTCCGACTGATGTGTTACGTCAGAAGATTTCTGAATC 540
Query 566 GGAAGCTGATAAATTGGTGGATGAGGTTGAGAGATCACGGAAGGAAGAACCGATTCGTGG 625
||||| |||||||||||||||||| ||| || ||| | ||| ||||||||||||| ||
Sbjct 541 TGAAGCGGATAAATTGGTGGATGAGATTGTGAAATCTCTAAAGCAAGAACCGATTCG-GG 599
Query 626 A-TCTCTGAGATCGGAGATTGAATCGGCGGTTTCGTTGCTGAGGAAAGCTGAGAGGCCGT 684
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 600 AGTCTCTGAGATCGGAGATTGAATCGGCGGTTTCGTTGCTGAGGAAAGCTGAGAGGCCAT 659
Query 685 TGATTGTGTTTGGTAAAGGAGCTGCGTATTCGAGAGCAGAAGATGAGCTGAAGAAGCTTG 744
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 660 TGATTGTGTTTGGTAAAGGAGCTGCGTATTCGAGAGCAGAGGATGAGCTGAAGAAGCTTG 719
Query 745 TTGAAATTACTGGAATACCCTTTTTACCAACTCCGATGGGTAAAGGTTTGTTACCGGACA 804
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 720 TTGAAATTACTGGAATACCCTTCTTACCAACTCCGATGGGTAAAGGTTTGTTACCGGACA 779
Query 805 CACACGAGTTCTCGGCGACTGCGGCGAGGTCTCTTGCTATTGGGAAATGTGATGTCGCGT 864
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 780 CACACGAGCTCTCGGCGACTGCGGCGAGGTCTCTTGCTATTGGGAAATGTGATGTTGCGT 839
Query 865 TGGTGGTTGGAGCTAGGCTTAACTGGCTTCTTCATTTCGGAGAGTCGCCTAAATGGGATA 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGGTGGTTGGAGCTAGGCTTAACTGGCTTCTTCATTTCGGAGAGTCGCCTAAATGGGATA 899
Query 925 AAGATGTAAAATTTATATTGGTGGATGTCTCTGAGGAAGAGATTGAGCTAAGGAAACCTC 984
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 900 AAGATGTGAAATTTATATTGGTGGATGTCTCTGAGGAAGAGATTGAGCTTAGGAAACCTC 959
Query 985 ATTTGGGGATTGTTGGAGATGCTAAAACTGTGATTGGATTGTTGAATAGAG-AGATCAAA 1043
|||||||||||||||||||||||||||| ||||||||||||||||| | || ||||||||
Sbjct 960 ATTTGGGGATTGTTGGAGATGCTAAAACAGTGATTGGATTGTTGAACA-AGGAGATCAAA 1018
Query 1044 GACGATCCTTTTTGTTTAGGGAAGTCTAATTCATGGGTGGAATCGATTTCGAAGAAGGCG 1103
|| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1019 GATGATCCTTTTTGTTTGGGGAAGTCTAATCCATGGGTGGAATCGATTTCGAAGAAGGCG 1078
Query 1104 AAAGAGAATGGTGAGAAGATGGAGATACAGCTTGCTAAAGATGTGGTTCCTTTCAATTTC 1163
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1079 AAAGAGAACGGTGAGAAGATGGAGGCACAGCTTGCTAAAGATGTGGTTCCTTTCAATTTC 1138
Query 1164 TTGACTCCTATGAGGATAATCAGAGACGCTATTTTGGCTGTGGAAGGACCGAGTCCTGTT 1223
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1139 TTGACTCCTATGAGGATAATCAGAGACGCGATTTTGGCGGTGGAAGGACCGAGTCCTGTT 1198
Query 1224 GTGGTATCGGAAGGAGCTAATACAATGGATGTAGGAAGATCTGTTTTGGTTCAGAAAGAG 1283
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1199 GTGGTATCGGAAGGTGCTAATACAATGGATGTAGGAAGATCGGTTTTGGTTCAGAAAGAG 1258
Query 1284 CCAAGGACAAGGCTTGATGCAGGAACTTGGGGAACTATGGGTGTTGGTTTAGGTTATTGT 1343
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1259 CCAAGGACAAGGATTGATGCAGGAACTTGGGGAACAATGGGTGTTGGTTTAGGTTATTGT 1318
Query 1344 ATTGCTGCTGCTGTTGCTTCTCCTGATCGGCTTGTTGTCGCTGTTGAAGGAGACTCTGGT 1403
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1319 ATTGCTGCTGCTGTTGCTTCTCCTGATCGGCTTGTTGTCGCCGTTGAAGGAGACTCTGGT 1378
Query 1404 TTTGGCTTCAGCGCCATGGAAGTCGAGACATTGGTTCGATACAATCTTGCTGTGGTGATT 1463
|| || ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 1379 TTCGGATTCAGCGCCATGGAAGTTGAGACGTTGGTTCGATACAATCTACCTGTGGTGATT 1438
Query 1464 ATAGTCTTCAACAATGGTGGTGTCTACGGCGGTGATCGAAGGGGACCTGAAGAAATCTCC 1523
||||||||||||||||||||||| || || |||||||||||||| |||||||||||||||
Sbjct 1439 ATAGTCTTCAACAATGGTGGTGTATATGGTGGTGATCGAAGGGGTCCTGAAGAAATCTCC 1498
Query 1524 GGTCCTCATAAAGAAGATCCAGCACCAACATCATTTGTTCCTAATGCAGGCTACCACAAG 1583
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1499 GGTCCTCATAAAGAAGATCCAGCACCAACATCTTTTGTTCCTAATGCAGGCTACCACAAG 1558
Query 1584 CTCATTGAAGCCTTTGGAGGCAAAGGTTATATTGTGGAAACACCCGATGAGCTTAAATCC 1643
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1559 CTTATTGAAGCCTTTGGAGGCAAAGGTTATATTGTGGAAACACCTGATGAGCTTAAATCC 1618
Query 1644 -GCTCTCGCTGAGTCGTTCGCCGCAAGAAAACCCGCGGTGGTAAATGTTATTATTGATCC 1702
| ||||||||||||||||||||||||||||||||| ||||| || || | || |||||
Sbjct 1619 AG-TCTCGCTGAGTCGTTCGCCGCAAGAAAACCCGCAGTGGTTAACGTCGTCATCGATCC 1677
Query 1703 TTTTGCTGGTGCTGAGAGTGGGAGATTACAGCACAAGAACTAAAAAGCTTTGTGGAGAGT 1762
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1678 TTTCGCTGGTGCTGAGAGTGGGAGATTACAGCACAAGAACTAAAA-GCTTTGTGGAGAGT 1736
Query 1763 CCCTTTAA-A-TAATGTTGAAGTTGTTTGTTGTGAACAAAAAGGATAT-A--CGTTTTAG 1817
||||| | ||||||||||||||||||||||||||||||| | | | ||||||||
Sbjct 1737 ---TTTAATAATAATGTTGAAGTTGTTTGTTGTGAACAAAAAAAAAAAGAAGCGTTTTAG 1793
Query 1818 TTTTCTGTTTTTCACTATTGTAAACCGGATCATAAA 1853
||||| ||||||||||||||||||||||||||||||
Sbjct 1794 TTTTCAGTTTTTCACTATTGTAAACCGGATCATAAA 1829
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71609660600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5