BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G17460.2 Length=1468 Score E Sequences producing significant alignments: (Bits) Value Ahg941254 jgi|Araly1|941254|scaffold_601798.1 1279 0.0 > Ahg941254 jgi|Araly1|941254|scaffold_601798.1 Length=970 Score = 1279 bits (692), Expect = 0.0 Identities = 778/821 (95%), Gaps = 0/821 (0%) Strand=Plus/Plus Query 261 CAACTCGATTTTATGCAAGTGGAAGAGGAAAAGACTACAATCTATTTGGTAATGTGAAAC 320 ||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 148 CAACTCGATCATATGCAAGTGGAAGAGGTAAAGACTACAATCTATTTGGTAATGCGAAAC 207 Query 321 CAGGTGATGATGACTTTAGAAAAACATGGGAGAAAGAAATGGAGGATGATGATACTCTAT 380 ||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||| Sbjct 208 CAGGTGATGATGACTTTAGAAAAGCCTGGGAGAAAGAAATGGGGGATGATGATACTCTAT 267 Query 381 GGTCAGGAAGTGAAGACGAAAGCAATGATAAGACAAAACAAGAAAGCGGAAGAAACCGTC 440 |||||||||||||||||||| || ||||||| |||||||||||||| ||||||||||| | Sbjct 268 GGTCAGGAAGTGAAGACGAAGGCGATGATAATACAAAACAAGAAAGTGGAAGAAACCGCC 327 Query 441 TTGAAAAAGAGATTAAGAAAGCTAGACAACAAGCTAAGGATAGCACCGATCAAATTGATG 500 ||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||| Sbjct 328 TTGAAAAAGAGATTAAGAAAGCTAGACAACAAGCTAAAGTTAGCTCCGATCAAATTGATG 387 Query 501 GAGATGATAGTGATGAATTGTACAGCGTTTGGTCAGGAAGTGATGAGGAAAAAACGCTGT 560 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| Sbjct 388 CTGATGATAGTGATGAATTATACAGTGTTTGGTCAGGAAGTGATGAGGAAAAAACGTTGT 447 Query 561 GGACTGGCGATGAAGGTGATGATGACGACGATATTCCAACAGAGCCACGCCCGAACGAGG 620 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 448 GGACAGGCGATGAAGGTGATGATGACGACGATATTCCAACAGAGCCACGCCCGAACGAGG 507 Query 621 CATCTGATAAATACTTAGATAAGTTGTTTGAGTTTGAGGAGAAACCAAAGTACAGGACAA 680 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 508 CATCTGATAAATACTTAGATAAGTTGTTTGAGTTTGAGGAGAAGCCAAAGTACAGGACAA 567 Query 681 TCTCAGAGTTGTTGAAATCTGAAAATGAACCTGAGGAGCTTTCACCCGGTAAAAAGGCGA 740 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| | Sbjct 568 TCTCAGAGTTGTTGAAATCTGAGAATGAACCCGAGGAGCTTTCACCCGGTAAAAAGGCAA 627 Query 741 GGAAGCTTGCTGTTGAGAACGCGTTGAAGAAACTGAATAAAGGGCCTGATGGGCGCTACA 800 ||||||||||||||||||||||| |||||||||| || |||||||| || ||||| |||| Sbjct 628 GGAAGCTTGCTGTTGAGAACGCGCTGAAGAAACTAAACAAAGGGCCGGACGGGCGTTACA 687 Query 801 CAAACGTGTGGGAAGTAATGAGTGATGTTGACATTCTGATTGGAGCATTTGAAAACATTA 860 |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 688 CAAACGTGTGGGAAGTGATGAGTGATGTCGACATTCTGATTGGAGCGTTTGAAAACATTA 747 Query 861 TCTCGGGACCTGAGTATGAAGAGCTAAGAAAAGGTGGACCCAAGAGACTGAACATGCAGT 920 |||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 748 TCTCAGGACCTGAATATGAAGAGCTAAGGAAAGGTGGACCCAAGAGACTTAACATGCAGT 807 Query 921 TCTTCAAGGATATACAAACTCGAATGAGAGATCCAAACTTCAAGTTCACACCTGAAATAA 980 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 808 TCTTCAAGGATATACAAACTCGCATGAGAGATCCAAACTTCAAATTCACACCTGAAATAA 867 Query 981 AGTTGAAGCCAAAGAGTAAACTAGTGCCTAGGAAGAAATGGCAGAAGGCACAGTCCAGAA 1040 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 868 AGTTGAAGCCAAAGAGTAAACTAGTGCCTAGGAAGAAATGGCAGAAGGCACAGTCCAGAA 927 Query 1041 TAAGGAAAGCGAAGAAGCGGTAAAAGCTCCACGCTAGTTCA 1081 |||||||||| |||||||||||||||||||| ||| ||||| Sbjct 928 TAAGGAAAGCAAAGAAGCGGTAAAAGCTCCATGCTTGTTCA 968 Score = 195 bits (105), Expect = 1e-48 Identities = 135/149 (91%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 53 AAGCCGTTAAAAGAGAAAAGGATGTTCGCGCGAAGACTCTCCTCTCTATTCTCTATCGTA 112 |||||||| |||| |||||||||||| ||||||||||||| |||||| ||||| ||| || Sbjct 1 AAGCCGTT-AAAGGGAAAAGGATGTTGGCGCGAAGACTCTACTCTCTGTTCTCAATCATA 59 Query 113 ACCAAAAGATCACAAAGTCGCTTGCTTTCGTGTCCGA-CAACTTCTGCTCAAAATTGGGT 171 ||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||| Sbjct 60 ACCAAAAGATCACAAAGTCGCTTGCTTTCGTGTCC-AGCAACAACTGCTCAAAATTGGGT 118 Query 172 ATTTGCTGAGTTTCGTCAGACTATACAAG 200 |||||||| ||||||||||| | |||||| Sbjct 119 ATTTGCTGGGTTTCGTCAGAATTTACAAG 147 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54926133290 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5